Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	2,016,437	Δ2 bp :: IS186 (–) +8 bp :: Δ1 bp	coding (570‑577/687 nt)	fliH →	flagellar biosynthesis protein FliH

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2016437 =	1 (0.020)	62 (0.950)	58/482	0.2	98.4%	coding (570/687 nt)	fliH	flagellar biosynthesis protein FliH
	?	NC_000913	2514274 =	NA (NA)					noncoding (2/1345 nt)	IS186	repeat region
*	?	NC_000913	= 2016444	4 (0.060)	72 (1.100)	69/484	0.1	94.6%	coding (577/687 nt)	fliH	flagellar biosynthesis protein FliH
	?	NC_000913	= 2515615	NA (NA)					noncoding (1343/1345 nt)	IS186	repeat region

ATCCGGTGGCTTCCAGCACCAGCCCGGTAGCGCGGGTTAATCGCCCGTAGCGACGTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGccc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2016683‑2016437 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGGCCCCGGGGGGATGTCATTACGTGAAGTCACTGCATGGGCTC  >  NC_000913/2514274‑2514523                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ATCCGGTGGCTTCCAGCACCAGCCCGGTAGCGCGGGTTAATCGCCCGTAGCGACGTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCA                                                                                                                                                                                                                                                        <  1:375429/251‑1   CCGGTGGCTTCCAGCACCAGCCCGGTAGCGCGGGTTAATCGCCCGTAGCGACGTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCAT                                                                                                                                                                                                                                                       <  1:430417/250‑1                   CCAGCCCGGTAGCGCGGGTTAATCGCCCGTAGCGACGTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGGGGGATCGCCCATAAGCGCTAACTTAAGGG                                                                                                                                                                                                                                      >  1:516765/1‑251                    CAGCCCGGTAGCGCGGGTTAATCGCCCGTAGCGACGTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGCGGCTTTACAGCCGCCAGGATGGGTGGTGGGGTAGCCCATAAGCGCGAACTTAAGGGT                                                                                                                                                                                                                                     >  1:224450/1‑251                     gGCCCGGTAGCGCGGGTTAACCGCCCGTAGCGACGTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTT                                                                                                                                                                                                                                    <  2:286399/250‑1                         CGGTAGCGCGGGTTAATCGCCCGTAGCGACGTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGCGACCTTACCGCCGCCCGGCTGGAGGGTGGGGTCGCCCATAAGCGCAAAATTAAGGGTTGggg                                                                                                                                                                                                                                >  2:399995/1‑248                          GGTAGCGCGGGTTAATCGCCCGTAGCGACGTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGT                                                                                                                                                                                                                               <  1:547512/251‑1                          GGTAGCGCGGGTTAATCGCCCGTAGCGACGTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGCGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCCGGATGGCGGGTGGGATCGCCCCTAACCGCTAACTTAAGGGgtggggg                                                                                                                                                                                                                               >  1:617628/1‑244                               CGCGGGTTAATCGCCCGTAGCGACGTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAC                                                                                                                                                                                                                          >  1:176357/1‑251                                GCGGGTTAATCGCCCGTAGCGACGTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCAAGCGAGTAAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGGGGGTGGGATCGGCCATAAGCGCTAACTTAAGGGTTGTGGTATTAtg                                                                                                                                                                                                                         >  1:309919/1‑249                                    GTTAATCGCCCGTAGCGACGTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTG                                                                                                                                                                                                                     <  1:518897/251‑1                                    GTTAATCGCCCGTAGCGACGTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTG                                                                                                                                                                                                                     <  1:393542/251‑1                                       AATCGCCCGTAGCGACGTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACCCTGGCGTCGAGATCGCCTTCATCGGCGGGGACTTTACAGCCGCCCGGATGGAGGGGGGGAGCGCCCATCAGCGCTTACTTCAGGGTTGGGGGATTCCGCCTGAT                                                                                                                                                                                                                   >  2:638045/1‑250                                         cCGCCCGTAGCGACGTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAATCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATG                                                                                                                                                                                                                <  2:570259/250‑1                                            CCCGTAGCGACGTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATT                                                                                                                                                                                                             <  2:173782/251‑1                                            CCCGTAGCGACGTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATT                                                                                                                                                                                                             <  2:51327/251‑1                                                  GCGACGTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGT                                                                                                                                                                                                       <  1:327337/251‑1                                                       GTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCCGGATGGAGGGGGGGATCGCCCATAAGCGCTTACTTAAGGGTTGTGGTATTACGCCTGATTTGATTTAACGTGCCG                                                                                                                                                                                                   >  2:480385/1‑250                                                             CAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATT                                                                                                                                                                                            <  2:516765/251‑1                                                                   ACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTC                                                                                                                                                                                      <  2:164500/251‑1                                                                      GCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCGCTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCAGCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGAGCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAGTTAACGTGCCGATGAATTACTCTCACG                                                                                                                                                                                   <  1:586029/251‑1                                                                      GCGCCATTTTGGCTGCAAAGTTATCCAGCGTGGTTAGCCGGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCccg                                                                                                                                                                                   <  2:145435/251‑4                                                                           ATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCAAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGCTGGAGGGTGGGACCGCCCATAAGAGATAACTTAAGGGGTGTGGTATTACGCCTGATATGATTTAACGTGACGATGAATGACTCTCACGTTAAC                                                                                                                                                                              >  1:39537/1‑251                                                                                GGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGT                                                                                                                                                                          <  1:523525/250‑1                                                                                GGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTG                                                                                                                                                                                                                                 >  1:182375/1‑195                                                                                GGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTG                                                                                                                                                                                                                                 <  2:182375/195‑1                                                                                        aggtaaCCAGCGGGGTTAGCCAGCGAGTCCGGGTCGTGGTCAGTACACCACTCCTGGTGCGTCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGAGCGCCCATAAGCGCTAACTTAAGGGGTGTGGTATTACGCCTGATATGATGTAACGTGCCGATGAAGTACGCTCACGATAACTGGTCAGCAATTC                                                                                                                                                                 <  2:669174/245‑1                                                                                        AGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATG                                                                                                                                                                                                                <  1:587404/204‑1                                                                                              CCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCCTAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCC                                                                                                                                                           >  1:234613/1‑251                                                                                              CCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACGTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCC                                                                                                                                                            <  1:90986/250‑1                                                                                                                 AGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTATCTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGA                                                                                                                                        <  2:26154/251‑1                                                                                                                     AGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGGATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTG                                                                                                                                    >  2:148280/1‑251                                                                                                                      GGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGG                                                                                                                                   >  1:136501/1‑251                                                                                                                       gcgcggggccagTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCACCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGA                                                                                                                                  <  2:203712/239‑1                                                                                                                          CGTGGTCAGTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACCCTGGCGTCGAGATCGCCTTCATCGGCGGAGACGTTACAGCCGCCAGGATGGAGGGGTGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGGATTACGCCTGATATGATTTAACGGTCCGATGAATTACTCTCACGATAACTGGTCAGCAAGTCTGGCCCATATTGGTAGTCCCTAAGAACTTGATAC                                                                                                                               <  2:353975/251‑1                                                                                                                            TGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTTCAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTAAGCAATTCTGGACCATATTGGTAAGCCCGAAGAACTGGcaactt                                                                                                                             >  2:30907/1‑245                                                                                                                             GGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTC                                                                                                                            >  1:18998/1‑251                                                                                                                             GGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATAGTGGTAAGCCCGAAGAACTGGATACTTC                                                                                                                            <  2:270982/251‑1                                                                                                                               TCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTAAAGCCGCCAGGATGGAGGGGGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGGATTACGCCTGATTTGATTTAACGTGACGATGAATTACTCCCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTCAGCCCGCAGAACTGGATACATCGG                                                                                                                          >  2:271584/1‑251                                                                                                                                        cacgccggggGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATTCTTCGGCACGTAATG                                                                                                                 <  2:254253/241‑1                                                                                                                                           TCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGGCGCCAGGATGGCGGGGGGGGTCGCCCATAAGCGCTAACTTAAGGGGTGTGGGATTACGGCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCGATTCTGGCCCATATTGGTAAGCCCGTAGAACTGGATACTTCGGgccgtaagtccg                                                                                                              >  2:337702/1‑239                                                                                                                                            CCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCG                                                                                                              <  1:243864/250‑1                                                                                                                                                GTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCCTAAGCGCTAACTTAAGGGGTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCAT                                                                                                                                                         >  2:190287/1‑203                                                                                                                                                GTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCAT                                                                                                                                                         <  1:190287/203‑1                                                                                                                                                  GCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATGACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCT                                                                                                       <  1:228612/251‑1                                                                                                                                                        AGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGGCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCG                                                                                                 <  2:18998/251‑1                                                                                                                                                          ACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCGGGCCCATATTGTTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCC                                                                                               <  2:482953/251‑1                                                                                                                                                                GAGTTCTTGCCGGCGAGTGGCGACACTGGCGTCGAGAGCGCCTTCATCGGCGGAGACTGTCCAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCACATATTGGTAAGCCCGAAGAACTGGATACTTCGCCACGTAATGCCGGGGCTCTAACCCGCCGCCGCG                                                                                         <  2:489153/251‑1                                                                                                                                                                       TGCCAGCGGGTGGCGACACTGGAGGCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCGAACGTAAGGGTTGTGGTATTACGCCTGATATGATGTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAAGTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTGCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATT                                                                                    <  2:34203/249‑1                                                                                                                                                                        GCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGT                                                                                 <  1:399995/251‑1                                                                                                                                                                                      ACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCAGATTGTTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCT                                                                   <  1:271584/251‑1                                                                                                                                                                                           GGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTAC                                                              <  1:652008/251‑1                                                                                                                                                                                            GCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACG                                                             <  1:679493/251‑1                                                                                                                                                                                               TCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCT                                                          >  1:216810/1‑251                                                                                                                                                                                                             ATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGGGGGATCGCCCCTAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAAATGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACG                                            >  1:483871/1‑251                                                                                                                                                                                                                  CGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGGCCCC                                       >  1:254765/1‑251                                                                                                                                                                                                                      GACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGGCCCCGGGG                                   <  2:379970/251‑1                                                                                                                                                                                                                              AGCCGCCAGGATGGAGGGCGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGGCCCCGGGGGGATGTC                            >  1:397722/1‑250                                                                                                                                                                                                                               GCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCTGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGGCCCCGGGGGGATGTCAT                          >  1:170073/1‑251                                                                                                                                                                                                                                          GGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGGCCCCGGGGGGATGTCATTACGTGAAGTC               <  1:622225/251‑1                                                                                                                                                                                                                                          GGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGGCCCCGGGGGGATGTCATTACGTGAAGT                <  2:483171/250‑1                                                                                                                                                                                                                                                       GCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGCTAACTGGCCAGCAATTCTGGCCCATATTGGTAAGCACGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAACTTCGGTATGCTGCAAATCTGCTACGACTGTGGCTTGCTTACGGCCCCGGGGGGATGTCATTACGTGAAGTCACCGCAGGGGCTC  >  1:605502/1‑251                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ATCCGGTGGCTTCCAGCACCAGCCCGGTAGCGCGGGTTAATCGCCCGTAGCGACGTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGccc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2016683‑2016437 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGGCCCCGGGGGGATGTCATTACGTGAAGTCACTGCATGGGCTC  >  NC_000913/2514274‑2514523

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.