New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4628620	0 (0.000)	28 (0.490)	28/478	0.7	100%	intergenic (+73/+235)	nadR/ettA	DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR/energy‑dependent translational throttle protein EttA
	?	NC_000913	4634847 =	0 (0.000)					coding (464/870 nt)	rob	DNA‑binding transcriptional dual regulator Rob

TTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCTGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCACCGGCGGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGTTGAGAGTCGAAGCGGTATTGCAGCG  >  NC_000913/4634611‑4635081                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                           cagcctcggcagttcggtggatcgcaaagagttccagaacttgctggtggagatgctcgaagagaacaatatcgaatttgtgcgggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgaggagttgaaaacctctctggaagaggAAATCAGAGATTTGc                                                                                                                                                                                                                              <  1:217856‑M2/15‑1 (MQ=255) cagcctcggcagttcagaggatcgcaaagagttccagaacttgctggtagagatgctcgtagagaacaatctcgaatttgtgcgggttgaagaggaagattacgacagtcgtttcctgcgctacgtggaactggggcaggagatgctgggggagcagagataaccgtaatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaccctctctagatgaggAACTCAAAGATTTGc                                                                                                                                                                                                                              >  2:391627‑M2/237‑251 (MQ=255)       cggcagttcggtggatcgcaaagagttccagaacttgctggtggagatgctcgaagagaacaatatcgaatttgtgcgggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAg                                                                                                                                                                                                                         <  1:447146‑M2/20‑1 (MQ=255)            gttcggtggatcgcaaagagttccagaacttgctggtggagatgctcgaagagaacaatatcgaatttgtgcgggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggaggagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCACCAGCGAACa                                                                                                                                                                                                                   <  2:156216‑M2/26‑1 (MQ=255)                ggtggatcgcaaagagttccagaacttgctggtggagatgctcgaagagaacaatatcgaagttgtgcgggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtgtttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAg                                                                                                                                                                                                               <  2:434208‑M2/30‑1 (MQ=255)                  tggatagcaaagagttccagaacttgctggtggagatgctcgaagagaacaatatcgaatttgtgcgggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgcggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGt                                                                                                                                                                                                              >  1:431229‑M2/220‑250 (MQ=255)                                            ctggtggagatgctcgaagagaacaatatcgaatttgtgcgggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGCTTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAgcggcg                                                                                                                                                                                   >  1:200390‑M2/194‑251 (MQ=255)                                             tggtggagatgctcgaagagaacaatatcgaatttgtgcgggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGt                                                                                                                                                                                  >  1:487284‑M2/193‑251 (MQ=255)                                               gtggagatgctcgaagagaacaatatcgaatttgtgcgggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTAt                                                                                                                                                                                >  1:227617‑M2/191‑251 (MQ=255)                                                   agatgctcgaagagaacaatatcgaatttgtgcgggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTc                                                                                                                                                                            <  1:338347‑M2/65‑1 (MQ=255)                                                       gctcgaagagaacaatatcgaatttgtgcgggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCGGGGTAACACCAATCAGCGGCGTATCTTCCAgg                                                                                                                                                                        <  1:198029‑M2/69‑1 (MQ=255)                                                         tcgaagagaacaatatcgaatttgtgcggattgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGt                                                                                                                                                                      >  1:596372‑M2/181‑251 (MQ=255)                                                                  acaatatcgaatttgtgcgggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAAttt                                                                                                                                                             <  2:251800‑M2/80‑1 (MQ=255)                                                                   caatatcgaatttgtgcgggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTtg                                                                                                                                                            >  1:387617‑M2/171‑251 (MQ=255)                                                                                                               gtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagctaaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAgcggcgggcgga                                                                                                                 >  1:375532‑M2/127‑248 (MQ=255)                                                                                                                   cctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTAACCCAggcgtagcggcgggaggatcac                                                                                                             >  2:311994‑M2/123‑242 (MQ=255)                                                                                                                       cgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAgg                                                                                                        >  1:147522‑M2/119‑251 (MQ=255)                                                                                                                                         cgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAAc                                                                                      <  1:337749‑M2/151‑1 (MQ=255)                                                                                                                                          gggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCCTTCAAGAGaa                                                                                       >  1:215018‑M2/100‑249 (MQ=255)                                                                                                                                                  atgggggagctgagataaccgtgaggaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGAGGGCTAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTaaa                                                                             <  2:395419‑M2/160‑1 (MQ=255)                                                                                                                                                    gggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGt                                                                           <  1:12862‑M2/162‑1 (MQ=255)                                                                                                                                                      gggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGc                                                                         <  2:487284‑M2/164‑1 (MQ=255)                                                                                                                                                                           gaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGctt                                                    <  1:532979‑M2/185‑1 (MQ=255)                                                                                                                                                                                                  aaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCt                             <  1:143698‑M2/208‑1 (MQ=255)                                                                                                                                                                                                             ttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGTTGAGAGTc                   <  1:311994‑M2/218‑1 (MQ=255)                                                                                                                                                                                                              tttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCTAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGt                                                                   <  1:276968‑M2/170‑1 (MQ=255)                                                                                                                                                                                                                      gttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTAGCTTCCAGGGTGACAAATTGGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTTTGTTGAGAGTCGAAGCGGTAt         <  2:577652‑M2/228‑1 (MQ=255)                                                                                                                                                                                                                             acctcactggaataggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTTTGGGTAACACCAATCAGCGGCGTATCGTCCAGGTTGACAAATGTGGGCTCTGGCATAGTGAATTCTCCCTGTCGTAGCGGCGGGCGAATACCAAAGTCGCTCCATTCAGGAGAACAGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTGGAATGCGCGGGTAAATGTCTGTTGACAGTCGAAGCGGTATTTCAgcg  <  2:494894‑M2/235‑1 (MQ=255)                                                                                                                                                                                                                                           ggAAATCAGAGATTTGCTCCAGCGAACAGGAGGAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAAGTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCAGTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGc                                                             <  2:72035/178‑1 (MQ=255)                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                           TTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCTGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCACCGGCGGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGTTGAGAGTCGAAGCGGTATTGCAGCG  >  NC_000913/4634611‑4635081

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.