Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,358,859 T→C Y110C (TAT→TGT)  puuP ← putrescine:H(+) symporter PuuP

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,358,8590TC100.0% 95.3 / NA 35Y110C (TAT→TGT) puuPputrescine:H(+) symporter PuuP
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (16/19);  total (16/19)

ACCAGGAAGATAAACACCACCATGATGGAGATTTGCACCAGTACAAACAGGGTATTGAAGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAATGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCGGCAAAAAGAGATAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGTAGCTGATAGCGGTAAACAGCACACCCGCCAGCGCCAGCAAATAGGACGCCGGAACGTGACCGTCGCTAATGCCGGAGACAATACCAAAAGTATCAAATACGGTCATCGGCGTGAGATAGGCCAGACCCATCATC  >  NC_000913/1358655‑1359104
                                                                                                                                                                                                            |                                                                                                                                                                                                                                                        
aCCAGGAAGATAAACGTCCCCATGATGGAGAGTTGCGCCAGTATAAACAGGGTATTGAAGTTAGCGACCAGTTTGACGCTCTTCAGATTCGCTGCGGGTAAAATGGCGACGAAGGTTGCCACCCACACCCACGGCGGCACGGCCGGGAAGAGGGCGGAGTGATAAATTATCGCCAACAAGACGTTAATCATCGGCAAAAAGAGACAATGCAGCAGCGATTACCAGCCGACCATaagggcgaggggcgggt                                                                                                                                                                                                             <  2:143010/250‑16 (MQ=255)
       aGATAAACACCACCATGATGGAGATTTGCACCAGTACAAACAGGGTATTGAAGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAATGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCGGCAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGAc                                                                                                                                                                                                   <  1:210421/251‑1 (MQ=255)
           aaaCACCACCATGATGGAGATTTGCACCAGTACAAACAGGGTATTGAAGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAATGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCGGCAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACtttt                                                                                                                                                                                               <  1:220703/251‑1 (MQ=255)
                ccaccaTGATGGAGATTTGCACCAGTACAAACAGGGTATTGAAGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAATGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCGGCAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGcgcg                                                                                                                                                                                         <  1:269068/251‑1 (MQ=255)
                      tgatgGAGATTTGCAACAGTACAAACAGGGTATTGAAGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAATGGGGACGAAGGGTACCACCCACACCCACGGCGGCACTTCCGGGGAGAGGGGGGAGAGATAGATTTTCGCCAACAAGACGGTAATCATCGGCAAAAAGAGACAATACAGCAGCGAAGACCAGCCGACCATAAATCCGACGTGAGGGGTAATCGACCTTTGCGCGTAggg                                                                                                                                                                                    >  2:108079/1‑249 (MQ=255)
                                   cACCAGTACAAACAGGGTATTGAAGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAAAGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGGAGAGGGCGGGGAGATAAAATTTCGCCAACAAGACGTTAATCATCGGCAAAAAGAGACAATCCCGCAGCGGTGACCAGCCGACCCTAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCgg                                                                                                                                                                      >  1:51121/1‑251 (MQ=255)
                                      cAGTACAAACAGGGTATTGAAGTTAGCGACAAGGTTGAAGCTCTTCAGATTCGCGGCGGTTACAATGGCGACGTCGGTTTCCACCCACACCCACGGCGGCACTTCAGCGCAGAGGGCGGCGAGATAGATTTTTGCCCCCAACAAGTTAATCATCGGCAAAAAGAGACAATCCAGCAACGATGAACCGCCGACCATAAATCCGCAGTGCGGGCTAATCGACTTTTGCCCGTAGGTATAggacgccccggccc                                                                                                                                                                   >  1:290533/1‑239 (MQ=255)
                                        gTACAAACAGGGTATTGAAGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAATGGGGACGAAGGTTACCACCCCAACCCACGGCGGCAACTCCCGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCGGCAAAAAGAGACAAACCAGCAGCGATGACCAACCGACCATAAATCCCACGTGCGGGTTAATCGACTTTTGCCCGCAGGTATAGGCCGAAACCGCCTcc                                                                                                                                                                 >  2:156791/1‑251 (MQ=255)
                                                  ggtgttGAAGTTAGCGACCAGGTGGCCGCTCTTCAGATTCGCGGCGGTTAAAATGGCGACGAAGTTTACCCCCCACTCCCGCGTCGGCGCGTCCGTGAAGAGGGCGGAGAGATAGATTTACGCCAACCAGACGTTAATCATCGGCAAAAAGATACAATCCAGCAGCGATGTCCAGCCCGTCATAACTCCGGCGTGCGGGTGAATCGACTTTTGCGCCTAGGTGTAGGCCGATCCGTCCGCTGGGAACTGGc                                                                                                                                                       <  2:190994/247‑1 (MQ=255)
                                                  ggTATTGAAGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAATGGCGACGAAGGTTACCACCCACACACACGGCGGCCCTTCCCGGGAGAGGGCGGAGAGATAGATTTTTGCCAAAAAGACGTTAATCATCGGCCAAAAGAGACAATCCAGCAGCGATGACCAACCGAACCTAAATCCGAAGTGGGGGTTAAACGACTTTTGCGCGTCGGTAAAGGCCGCACCGGCCTCCGGAAACTGGc                                                                                                                                                       >  2:203112/1‑251 (MQ=255)
                                                     aTTGAAGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAATGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCGGCAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGaa                                                                                                                                                    <  1:176916/251‑1 (MQ=255)
                                                        gAAGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAATGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCGGCAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAAccc                                                                                                                                                 >  1:213937/1‑250 (MQ=255)
                                                                 gACCAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAATGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCGGCAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGt                                                                                                                                        <  2:100118/251‑1 (MQ=255)
                                                                      ggTTGACGCTCTTCAGATTCGCGGCGGTTAAAATGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCGGCAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGGATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGGAGCTg                                                                                                                                   >  1:295405/1‑251 (MQ=255)
                                                                          gACGCTCTTCAGATTCGCGGCGGGTAAATTGGCGACCAAAGTTATCACCCACACCCACGGCGGCACCTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCCACAAAACGGTAATCAACATCAAAAAGAGACAATCCAGCAGCGATGACAAAGCGACCATCAATCCGACCGTCGGGTTAATCGACTTTTGCGCCTAGGGATACGCCGAACCGGCCGCCGGGAACCGGCggacacatttgccggagcgtcttg                                                                                                                               >  2:308109/1‑228 (MQ=255)
                                                                                ctTCAGATTCGCGTCGGTTAAAATGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCAACGGCAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATGGGCCGATCCGGCCTCCCGAAACGGGCGAACCAGTTAGCTTTAGCTGATGGCGGt                                                                                                                           <  2:290533/249‑1 (MQ=255)
                                                                                   cAGATTCGCGGCGGTTAAAATGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCGGCAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGTAGCTGATAGCGGTAAACa                                                                                                                      <  1:156920/251‑1 (MQ=255)
                                                                                      aTTCGCGGCGGCTTAAATAGCGACGAAGGGTACCACCCACACCCACGGCGGCACTTTCGGGAAGAGGGGGGAGAGATAGATTTTTTCCAACAAGACGGTAATCATCGGCAAAAAAAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGGGCGGGGTAATCGGCTTTTGCGCGTAGGGAAAGGCCGAACCGGCCTCCGGAAACTTGCGAACCAGATTTCCGTAGCTGATAGCGGGAAACAGc                                                                                                                    >  2:293484/1‑250 (MQ=255)
                                                                                          gcggcgGTTAAAATGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCGGCAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGTAGCTGATAGCGGTAAACAGCACAcc                                                                                                               <  2:121989/251‑1 (MQ=255)
                                                                                                                gggTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCGGCAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGTAGCTGATAGCGGTAAACAGCACACCCGCCAGCGCCAGCAAATAggcc                                                                                         <  1:93287/250‑3 (MQ=255)
                                                                                                                         cccccccccacGGCGGACCTCCCGGGAAGGGGGAGGAGAATTAGATTTCCGCAAACAAGACGTTAACAATGGGAAAAAAGAGACAAACCAGCAGCGATGACCAGCCGCCCATAAACCCGACGTGGGGGTTAACCGCTTTTGGCGCGTAGGTATAGGCCGACCCGCCCCCGGGAAACGGGCGAACCATTTGGCGGTGGCGGAGAGGGTTAAACAGCACACCCGCCAGCGCCAGCAAATAGGACGCCGGAACg                                                                                <  2:182682/245‑1 (MQ=255)
                                                                                                                                 cccggcggccctgcgggtaaaagGGCGAAGATATAGATTTTCCCCAACAATACTTTAATCATCGGAAAAAAGAGACAATCCAGCAGCGATGACCACCCGACCATAACCCCGACGTGCGGGTTAATCGACTTTGGCGCTTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCGGTAGCTAATACCTGTAAACAGCACACCCGCCAGCGCCAGCAAATAGGACGCCGGAACGTTACCGTc                                                                        <  1:250434/230‑1 (MQ=255)
                                                                                                                                       ggcACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCGGCAAAAAGAGCCAACCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTGGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGTAGCTGATAGCGGTAAACAGCACACCCGCCAGCGCCAGCAAATAGGACGCCGGAACGTGACCGTCGCTAAt                                                                  <  1:216998/251‑1 (MQ=255)
                                                                                                                                                     gagGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCGGCAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGTAGCTGATAGCGGTAAACAGCACACCCGCCAGCGCCAGCAAATAGGACGCCGGAACGTGACCGTCGCTAATGCCGGAGACAATAc                                                    >  2:165904/1‑251 (MQ=255)
                                                                                                                                                      agGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCGGCAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGTAGCTGATAGCGGTAAACAGCACACCCGCCAGCGCCAGCAAATAGGACGCCGGAACGTGACCGTCGCTAATGCCGGAGACAATAcc                                                   >  2:135199/1‑251 (MQ=255)
                                                                                                                                                           ggAGAGATAGTTTTTCGCAAAAAAGCCGTAAATCATCGGAAAAAAGAGACAACCCAGCAGCGATGACCATCCGACCATAAACCCGGCGTGCGGTTTAATCGATTTTTGCGCGTAGGTATAGGCCGACCCGCCCCCGGGAAACTGGCGAACCAGTTTGCCGTAGCTGATAGCGGTAAAAAGCACCCCCGCCAGCGCCAGCAAATAGGACGCCGGAACGTGACCGTCGCTAATGCCGGAGACAATACCAAAAg                                              <  2:213937/251‑1 (MQ=255)
                                                                                                                                                            gagaaaaaaatttccgcaaaaaaGACGTTAATCAGCGACAAAAAGAAACAACCCAGCAGCGAGGCCCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTGGCGGGTAGGTATAGGCCAAACCGCCCTCCGAAACCGGGCGACCCAGTTGGCCGTAGCGGATAGCGGTAAACAGCACACCCGCCAGCGCCAGCAAATAGGACGCCGGAACGTGACCGTCGCTAATGCCGGAGACAATACCAAAAGt                                             <  2:30454/230‑1 (MQ=255)
                                                                                                                                                                      tttccGCCAAAAGGACGTTAATAATCGGCAAAAAGAGACAACGCAGAAGCGATGACCAGCCGACCAAAAACCCGACGTGCGGGTTAATCGACTTTGGCGGGTGGGTATAGGCCGAACCGGCCTCCGGAACCGGGCGAACCAGTTTGCCGGAGCTGATAGCGGAAAACAGAACACCCGCCAGCGCCAGCAAATAGGACGCCGGAACGTGACCGTCGCTAATGCCGGAGACAATACCAAAAGTATCAAATAc                                    <  2:252690/246‑1 (MQ=255)
                                                                                                                                                                            ccAACAAGACGTTAATCATCGGCAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGTAGCTGATAGCGGTAAACAGCACACCCGCCAGCGCCAGCAAATAGGACGCCGGAACGTGACCGTCGCTAATGCCGGAGACAATACCAAAAGTATCAAATACGGTCATc                             >  1:27922/1‑251 (MQ=255)
                                                                                                                                                                             caacaaGACGTTAATCATCGGCAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGTAGCTGATAGCGGTAAACAGCACACCCGCCAGCGCCAGCAAATAGGACGCCGGAACGTGACCGTCGCTAATGCCGGAGACAATACCAAAAGTATCAAATACGGTCATCg                            >  1:277175/1‑251 (MQ=255)
                                                                                                                                                                                  agattttAATCATCGCCAAAAATAGACACTCCACCAGCGATGCCCAGCCGACCATAATTCGGCGTTGCGGTTTAATCGACTTTTGCGCGTAGGTCTAGGCCGAACCGCCCTCCGGAAACTGGCGAACCTTTTTGCGGTAGCTGATAGCGGTAAACAGCACACCCGCCAGCGCCAGCAAATAGGACGCCGGAACGTGACCGTCGCTAATGCCGGAGACAATACCAAAAGTATCAAATACGGTCATCGGCGTg                       <  1:130856/246‑1 (MQ=255)
                                                                                                                                                                                       ttAATCATCGGCAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGTAGCTGATAGCGGTAAACAGCACACCCGCCAGCGCCAGCAAATAGGACGCCGGAACGTGACCGTCGCTAATGCCGGAGACAATACCAAAAGTATCAAATACGGTCATCGGCGTGAGAt                   >  2:60343/1‑250 (MQ=255)
                                                                                                                                                                                               cGGCAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGTAGCTGATAGCGGTAAACAGCACACCCGCCAGCGCCAGCAAATAGGACGCCGGAACGTGACCGTCGCTAATGCCGGAGACAATACCAAAGGTATCAAATACGGTCATCGGCGTGAGATAGGCCAGAc          >  2:77525/1‑251 (MQ=255)
                                                                                                                                                                                                       agagACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGTAGCTGATTGCGGTAAACAGCACACCCGCCAGCGCCAGCAAATAGGACGCCGGAACGTGACCGTCGCTAATGCCGGAGACAATACCAAAAGGATCAAATACGGTCATCGGCGTGAGATAGGCCAGACCCatcatc  >  2:222974/1‑251 (MQ=255)
                                                                                                                                                                                                       agagACAATCCAGCACCGATGACCGTCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACGGGCGAACCAGTTTGCCGGAGCTGATAGCGGTAAACAGCTCACCCGCCAGCGCCAGCAAATAGGACGCCGGAACGTGACCGTCGCTAATGCCGGAGACAATACCAAAAGTATCAAATACGGTCATCGGCGTGAGATAGGCCAGACCCatcatc  <  1:74795/251‑1 (MQ=255)
                                                                                                                                                                                                            |                                                                                                                                                                                                                                                        
ACCAGGAAGATAAACACCACCATGATGGAGATTTGCACCAGTACAAACAGGGTATTGAAGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAATGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCGGCAAAAAGAGATAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGTAGCTGATAGCGGTAAACAGCACACCCGCCAGCGCCAGCAAATAGGACGCCGGAACGTGACCGTCGCTAATGCCGGAGACAATACCAAAAGTATCAAATACGGTCATCGGCGTGAGATAGGCCAGACCCATCATC  >  NC_000913/1358655‑1359104

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: