| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,061,935 | G→A | S46N (AGC→AAC) | torD → | trimethylamine‑N‑oxide reductase‑specific chaperone |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,061,935 | 0 | G | A | 94.4% | 100.1 / NA | 36 | S46N (AGC→AAC) | torD | trimethylamine‑N‑oxide reductase‑specific chaperone |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (23/11); minor base C (1/1); total (24/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGGTGGAAATTGAGAAGTACAACGGAACAGTGGAGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCACGCTGACAGCACAACAGATTGCCTGTGTTTACGCCTGGCTAGCGCAGTTGTTCTCCCGTGAGCTGGACGATGAACAACTGACGCAAATCGCCAGTGCGCAGATGGCTGAATGGTTTTCGTTGCTGAAAAGCGAACCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAACCGTATTGCCACGCTGACAGTACGTGACGATGCCCGTCTGGAACTGGCCGCGGACTTTTGCGGCCTGTTTCTGATGACCGACAAACAAGCGGCGCTGCCGTATGCATCGGCCTA‑CAAACAGGACGAGCAAGAGATTAAACGCTTGTTAGTTGAGGCAGGGATGGAAACCAGCGGCAATTTCAACGAACCGGCAGATCA > NC_000913/1061690‑1062172 | tggtggAAATTGAGAAGTACAACGGAACAGTGGAGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCACGCTGACAGCACAACAGATTGCCTGTGTTTACGCCTGGCTAGCGCAGTTGTTCTCCCGTGAGCTGGACGATGAACAACTGACGCAAATCGCCAGTGCGCAGATGGCTGAATGGTTTTCGTTGCTGAAAAACGAAc > 2:166055/1‑251 (MQ=255) gtggAAATTGAGAAGTACAACGGAACAGTGGAGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCCGGTGAAATCATGACCACGCTGACAGCACAACAGATTGCCTGTGTTTACGCCTGGCTAGCGCAGTTGTTCTCCCGTGAGCTGGACGATGAACAACTGACGCAAATCGCCAGTGCGCAGATGGCTGAATGGTTTTAGTTGCTGAAAAACGAAccg > 2:214317/1‑251 (MQ=255) gTACAACGGAACAGTGGAGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGATGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCACGCTGACAGCACAACAGATTGCCTGTGTTTACGCCTGGCTAGCGCAGTTGTTCTCCCGTGAGCTGGACGAGGAACAACTGACGCAAATCGCCAGTGCGCAGATGGCTGAAGGGTTTTCGTTGCTGAAAAACGAACCGCCGCTCACTgcggc < 1:34128/251‑1 (MQ=255) aCAGTGGAGCAGGTGACGGCGTTTAACGGCACAGTGGAGAAGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCACGCTGACAGCACAACAGATTGACTGTGTTTACGCCTGGCTAGCGCAGTTGTTCTCCCGTGAGCTGGACGATGAACAACTGACGCAAATCGCCAGTGCGCAGATGGCTGAATGGTTTTCGTTGCTGAAAAACAAACCGCCGCTCACTGCGGCGGAGAACg > 1:196292/1‑249 (MQ=255) gTGGAGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGCCCACGCTGACAGCACAACAGATTGCCTGTGTTTACGCCTGGCTAGCGCAGTTGTTCTCCCGTGAGCGGGACGATGAACAACTGACGCAAATCGCCAGTGCGCAGAGGGCTGAATGGTTTTCGTTGCTGAAAAACGAACCGCCGCTCACTGCGGCGGTGAACGAGCTg < 1:298023/251‑1 (MQ=255) aaCGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCACGCTGACAGCACAACAGATTGCCTGTGTTTACGCCTGGCTAGCGCAGTTGTTCTCCCGTGAGCTGGACGATGAACAACTGACGCAAATCGCCAGTGCGCAGATGGCTGACTGGTTTTCGTTGCTGAACACCGAACCGCCGCTCACTGCGGCGGTGAACGCGCTGGTAACCCGTCTTGCCACGCtt > 2:95053/1‑250 (MQ=255) ggCCCCGTGGAGCAGCGGGCGCAGTGCGCATCTGTTCCCGCGTCGCAGGTGCAATCATGACCACGCTGACAGCCCAACAGATTGCCTGTGTTTACGCCTGGATAGCGCAGTTGTTCTCCCGTGAGCTGGACGATGCACAACTGACGCAAATCGCCAGTGCGCAGATGGCTGAATGGTTTTCGTTGCTGAAAAACGAACCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAACCGTATTGCCCCGCTGAc > 2:180815/1‑250 (MQ=255) gCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCACGCTGACAGCACAACAGATTGCCTGTGTTTACGCCTGGCTAGCGCAGTTGTTCTCCCGTGAGCTGGACGATGAACAACTGACGCAAATCGCCAGTGCGCAGATGGCTGAATGGTTTTCGTTGCTGAAAAACGAACCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAACCGTATTGCCACGCTGaa > 2:117248/1‑248 (MQ=255) tGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCACGCTGACAGCACAACAGATTGCCTGTGTTTACGCCTGGCTAGCGCAGTTGTTCTCCCGTGAGCTGGACGATGAACAACTGACGCAAATCGCCAGTGCGCAGATGGCTGAATGGTTTTCGTTGCTGAAAAACGAACCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAACCGTATTGCCACGCTGACAGTACGTg > 2:117620/1‑251 (MQ=255) ggtggCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCACGCTGACAGCACAACAGATTGCCTGTGTTTACGCCTGGCTAGCGCAGTTGTTCTCCCGTGAGCTGGACGATGAACAACTGACGCAAATCGCCAGTGCGCAGATGGCTGAATGGTTTTCGTTGCTGAAAAACGAACCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAACCGTATTGCCACGCTGACAGTACGTGACGATGc > 2:264556/1‑251 (MQ=255) gtggCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCACGCTGACAGCACAACAGATTGCCTGTGTTTACGCCTGGCTAGCGCAGTTGTTCTCCCGTGAGCTGGACGATGAACAACTGACGCAAATCGCCAGTGCGCAGATGGCTGAATGGTTTTCGTTGCTGAAAAACGAACCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAACCGTATTGCCACGCTGACAGTACGTGACGATGcc > 2:117682/1‑251 (MQ=255) tatGTTCCCGCGTCGCAGGTGAAATCATGACCACGCTGACAGCACAACAGATTGCCTGTGTTTACGCCTGGCTAGCGCAGTTGTTCTCCCGTGAGCTGGACGATGAACAACTGACGCAAATCGCCAGTGCGCAGATGGCTGAATGGTTTTCGTTGCTGAAAAACGAACCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAACCGTATTGCCACGCTGAAAGTACGTGACGATGCCCGTCTGGGACTGGcc > 1:291948/1‑251 (MQ=255) tCCCGCGTCGCAGGTGAAATCATGACCACGCTGACAGCACAACAGATTGCCTGTGTTTACGCCTAGCTAGCGCAGTTGTTCTCCCGTGCGCTGGACGATGAACAACTGACGCAAATCGCCAGTGCGCAGATGGCTGAATGGTTTTCGTTGCTGAAAAACGAACCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAACCGTATTGCCACGCTGACAGTACGTGACGATGCCCGTCTGGAACTGGCcggggc > 1:196944/1‑247 (MQ=255) tGAAATCATGACCACGCTGACAGCACAACAGATTGCCTGTGTTTACGCCAGGCTAGCGCAGTTGTTCTCCCGTGAGCTGGACGATGAACAACTGACGCAAATCGCCAGTTCGCAGATGGCTGAATGGTTTTCGTTGCTGAAAAACGAACCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAACCGTATTGCCACGCCGACGATACGAGACGATGACCGTTTGGAACCGGCCCCGGGCTTTTgccgcccgt > 2:247452/1‑248 (MQ=255) cATGACCGCGCGGACAGCACAACAGAGTGCCTGTGTTTACGCCGGGCTAGCGCGGGTGTGCTCCCGTGGGCGGGACAATGAACAACTGACGCAAATCGCCAGCGCGCAGATGGCGGAGTTTTTTTCGTTGCGGAAAAACGACCCGCCGCTCACTGCGGCGGTGAACGAGCTGGAATACCGTTTTGCCACGCTGACAGTACGTGGCGATGCCCGTCTGGAACTGTCCGCGGACTATTGCGGCCTGTTTCtga < 2:151867/251‑1 (MQ=255) cGCTGACAGCACAACAGATTGCCTGTGTTTACGCCTGGCTAGCGCAGTTGTTCTCCCGTGAGCTGGACGATGAACAACTGACGCAAATCGCCAGTGCGCAGATGGCTGAATGGTTTTCGTTGCTGAAAAACGAACCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAACCGTATTGCCACGCTGACAGTACGTGACGAGTCCCGTCTGGAACTGGCCGCGGACTTTTGCGGCCTGTTTCTGATGGCCGac > 2:10917/1‑251 (MQ=255) cGCTGACAGCACAACAGATTGCCTGTGTTTACGCCTGGCTAGCGCAGTTGTTCTCCCGTGAGCTGGACGATGAACAACTGACGCAAATCGCCAGTGCGCAGATGGCTGAATGGTTTTCGTTGCTGAAAAACGAACCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAAACGGATTGCCACGCTGACAGTACGTGACGATCCCCGGCTGGAACTGGCCGCGGACTTTTTCGGCAGGTTTCTGGTGCCCGac > 2:236813/1‑251 (MQ=255) gCTGACAGCACAACAGATTGCCTGTGTTTACGCCTGGCTAGCGCAGTTGTTCTCCCGTGAGCTGGACGATGAACAACTGACGCAAATCGCCAGTGCGCAGATGGCTGAATGGTTTTCGTTGCTGAAAAACGAACCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAACCGTATTGCCACGCTGACCGTACGTGACGATGCCCGTCTGGAACAGGCCGCGGACTTTTGCGGCCCGTTTCTGATGACCGac > 2:1808/1‑250 (MQ=255) aacaGATTGCCTGTGTTTACGCCTGGCTAGCGCCGTTGTTCTCCCGTGAGCTGGACGATGAACACCTGACGCAAATCGCCAGTGCGCAGATGGCTGAATGGTTTTCGTTGCTGAAAAACGAACCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAACCGCATTGCCACGCTGACAGTACGTGACGATGCCCGTCTGGAACTGGCCGCGGACTTTTGCGGCCTGTTTCTGATGACCGACAAACAAacggcg > 2:138275/1‑251 (MQ=255) ccTGGCTAGCGCAGTTGTTCTCCCGTGAGCTGGACGATGAACAACTGACGCAAATCGCCAGTGCGCAGATGGCTGAATGGTTTTCGTTGCTGAAAAACGAACCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAACCGTATTGCCAAGCTGACCGTACGTTACGATGCCCGTCTGGAACTGGCCGCGGACTTTTGCGGCCTGTTTCTGGTGACCGGCAAACAAGCTGCGCTGCCGTATTCCTCGGCCttc > 2:288898/1‑249 (MQ=255) gCTAGCGCAGTTGTTCTCCCGTGAGCTGGACGATGAACAACTGACGCAAATCGACAGTGCGCAGATGGCTGAATGGTTTTCGTTGCTGAAAAACGAACCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAACCGTATTGCCACGCTGACAGTACGTGACGATGCCCGTCTGGAACTGGCCGCGGACTTTTGCGGCCTGTTTCTGATGACCGGCAAACAAACGGCGATGCCGTATGCCTCGGCCTT‑CAAAc > 1:215911/1‑251 (MQ=255) cgggaggtgttCTCCCGGGGGGTGGCCGAGGAACCACTGACGCAAATCGCCAGTGCGAAGAGGGCTGAGTGTTTTTCGTTGCAAAAAAACGACCCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAACCGTATTGCCACGCTGACAGTACGTGACGATGCCCGTCTGGAACTGGCCGCGGACTTTTGCGGCCTGTTTCTGATGACCGACAAACAAGCGGCGCTGCCGTATGCATCGGCCTA‑CAAACAGGa < 2:127125/244‑1 (MQ=255) tgttCTCCCGGGAGCTGGACGATGAACACCTGCCGCAAATCGCCAGTGCGCAGATGGGTGAATGGTTTTCGTTGCGGAAAAACGAACCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAACCGTATTGCCACGCTGACAGTACGTGACGATGCCCGTCTGGAACTGGCCGCGGACTTTTGCGGCCTGTTTCTGATGACCGACAAACAAGCGGCGCTGCCGTATGCATCGGCCTA‑CAAACAGGACGAGCa < 1:270644/250‑1 (MQ=255) ggTGAGCTGGACAATGAACAACTGACGCAAATCGCCAGTGCGCAGAGGGCTAAATGGTTTTCTTTGCTGAAAACCGAACCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAACCGTATTGCCACGCTGACAGTACGTGACGATGCCCGTCTGGAACTGGCCGCGGACTTTTGCGGCCTGTTTCTGATGACCGACAAACAAGCGGCGCTGCCGTATGCATCGGCCTA‑CAAACAGGACGAGCAAGAGATTaa < 1:248611/250‑1 (MQ=255) ggACGATGAACAACTGACGCAAATCGCCAGTGCGCAGATGGCTGAATGGTTTTCGTTGCTGAAAAACGAACCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAACCGTATTGCCACGCTGACAGTACGTGACGATGCCCGTCTGGAACTGGCCGCGGACTTTTGCGGCCTGTTTCTGATGACCGACCAACAAGCGGCGCTGCCGTATGCATCGGCCTA‑CAAACAAGACGAGCAAGAGATTAAACGCTTGt > 2:276666/1‑251 (MQ=255) caacGGACGAAAATCGCCGGTGCGCAGATGGTTGAATGTTTTGGGTTGCAAAAAAACGACCCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAACCGTATTGCCACGCTGACAGTACGTGACGATGCCCGTCTGGAACTGGCCGCGGACTTTTGCGGCCTGTTTCTGATGACCGACAAACAAGCGGCGCTGCCGTATGCATCGGCCTA‑CAAACAGGACGAGCAAGAGATTAAACGCTTGTTAGTTGAGGc < 2:159569/251‑1 (MQ=255) gaaatccaccggTGCGCAAAGGGCGGAAGGGTTTACGTTGTTGAAAAACTAACCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAACCGTATTGCCACGCTGACAGTACGTGACGATGCCCGTCTGGAACTGGCCGCGGGCTTTTGCGTGCTGGGTCTGATGACCGACAAACAAGCTGCGCTGCCGTATGCATCGGCTTA‑CAAACAGGACGAGCAAGAGGTTAAACGCTTGTTAGTTGAGGCAGGGATgg < 1:303967/240‑1 (MQ=255) ccaaccccccgcggccgagaggtgggAATGGTTTTCGTTCCTAAAACACGAACCGCCGCTCGCTGCGGCGGTGAACGAGCTGGAAAACCGTATTGCCACGCTGACAGTACGTGACGATGCCCGTCTGGAACTGGCCGCGGACTTTTGCGGCCTGTTTCTGATGACCGACAAACAAGCGGCGCTGCCGTATGCATCGGCCTA‑CAAACAGGACGAGCGAGAGATTAAACGCTTGTTAGTTGAGGCAGGGATgg < 2:52836/226‑1 (MQ=255) agagggCTGAATGTTTTTCGTTGCTAAAAAACTAACCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAACCGTATTGCCACGCTGACAGTACGTGACGATGCCCGTCTGGAACTGTCCGCGGACTTTTGCGGCCTGTTTCTGATGACCGACAAACAAGCGGCGCTGCCGTATGCATCGGCCTA‑CAAACAGGACGAGCAAGAGATTAAACGCTTGTTAGTTGAGGCAGGGATGGAAACCAGCGGCAATTTc < 1:296585/247‑1 (MQ=255) aTGGCTGAATGGTTTTCGTGGCTGAAAAACGAACCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAACCGTATTGCCACGCTGACAGTACGTGACGATGCCCGTCTGGAACTGGCCGCGGACTTTTGCGGCCTGTTTCTGATGACCGACAAACAAGCGGCGCTGCCGTATGCATCGGCCTA‑CAAACAGGACGAGCAAGAGATTAAACGCTTGTTAGTTGAGGCAGGGATGGAAACCAGCGGCAATTTCaa < 1:138275/251‑1 (MQ=255) gCTGAATGGTTTTCGTTGCTGAAAAACGAACCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAACCGTATTGCCACGCTGACAGTACGTGACGATGCCCGTCTGGAACTGGCCGCGGACTTTTGCGGCCTGTTTCTGATGACCGACAAACAAGCGGCGCTGCCGTATGCATCGGCCTA‑CAAACAGGACGAGCAAGAGATTAAACGCTTGTTAGTTGAGGCAGGGATGGAAACCAGCGGCAATTTCAACg > 1:73373/1‑250 (MQ=255) aaTGGTTTTCGTTGCTGAAAAACGAACCGCAGCTCACTGCGGCGGTGAACCCGCTGGAAAAACGTATTGACACACTGACAGTACGTAACGATGCCCGGCTGGCACTGGCCGCGGACTTTTGCGGCCCGTTTCTGCTGACCGACAAACAAGCGGCGCTGCCGTATGCCTCGGCCTA‑CAAACAGGACGAACAAAAGATTAAACGCTTGTTAGTTGAGGCACGGATGGGAACCAGCGGGAAATTCAACAAAccc > 1:295142/1‑250 (MQ=255) tGGTTTTCGTTGCTGAAAAACGAACCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAACCGTATTGCCACGCTGCCAGTACGTGACGATGCCCGTCTGGAACTGGCCGCGGACTTTTGCGGCCTGTTTCTGATGACCGCCAAAAAAGCGGCGCTGCCGTATGCCTCGGCCTA‑CAAACAAGACGAGCCAGAGATTAAACGCTTGTTAGTTGAGGGCGGGGTGGGAACCAGCGGCCATTTTCACGAACCggg > 2:90185/1‑250 (MQ=255) gTTTTCGTTGCTGAAAAACGACCCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAACCGTATTGGCACGCTGACAGTACGTGACGATGCCCGTCTGGAACTGGCCGCGGACTTTTGCGGCCTGTTTCTGATGACCGACAAACAAGCGGCGCCGCCGTTTGCATCGGCCTAACAAAC‑GGACCAGCAAGAGATTAAACGCTTGTTAGTTGAGGCAGGGATGGGAACCAGCGGCAATTTCAAccaaaccgg > 2:167247/1‑241 (MQ=255) gTTTTCGTTGCTGAAAAACGAACCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAACCGTATTGCCACGCTGACAGTACGTGACGATGCCCGTCTGGAACTGGCCGCGGACTTTTGCGGCCTGTTTCTGATGACCGACAAACAAGCGGCGCTGCCGTATGCATCGGCCTA‑CAAACAGGACGAGCAAGAGATTAAACGCTTGTTAGTTGAGGCAGGGATGGAAACCAGCGGCAATTTCAACGAACCGGc > 1:105644/1‑249 (MQ=255) gggtGCTAAAAAACGACCCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAACCGTATTGCCACGCTGACAGTACGTGACGATGCCCGTCTGGAACTGGCCGCGGACTTTTGCGGCCTGTTTCTGATGACCGACAAACAAGCGGCGCTGCCGTATGCATCGGCCTA‑CAAACAGGACGAGCAAGAGATTAAACGCTTGTTAGTTGAGGCAGGGATGGAAACCAGCGGCAATTTCAACGAACCGGCAGatca < 2:250167/247‑1 (MQ=255) | TGGTGGAAATTGAGAAGTACAACGGAACAGTGGAGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCACGCTGACAGCACAACAGATTGCCTGTGTTTACGCCTGGCTAGCGCAGTTGTTCTCCCGTGAGCTGGACGATGAACAACTGACGCAAATCGCCAGTGCGCAGATGGCTGAATGGTTTTCGTTGCTGAAAAGCGAACCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAAACCGTATTGCCACGCTGACAGTACGTGACGATGCCCGTCTGGAACTGGCCGCGGACTTTTGCGGCCTGTTTCTGATGACCGACAAACAAGCGGCGCTGCCGTATGCATCGGCCTA‑CAAACAGGACGAGCAAGAGATTAAACGCTTGTTAGTTGAGGCAGGGATGGAAACCAGCGGCAATTTCAACGAACCGGCAGATCA > NC_000913/1061690‑1062172 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |