| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,712,664 | +A | intergenic (+506/‑105) | nth → / → dtpA | endonuclease III/dipeptide/tripeptide:H(+) symporter DtpA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,712,664 | 1 | . | A | 91.7% | 35.7 / ‑4.3 | 12 | intergenic (+506/‑105) | nth/dtpA | endonuclease III/dipeptide/tripeptide:H(+) symporter DtpA |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base A (8/3); total (8/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.33e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACG‑CTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGTTATATGTAACAGATTATTACAAAGGACTTGTCTGAAAGTGCAAGATAGTGAAC‑A‑TTACCTGCCGTTTCCCCTCCCACTATAACAATTGCGCGTATGTTTTTTATACATAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTAT > NC_000913/1712429‑1712862 | cATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACG‑CTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGTTATATGTAACAGATTATTACAAAGGACTTGTCTGAAAGTGCAAGATAGTGAAC‑AATTACCTGCCGTTTc > 1:18396/1‑251 (MQ=255) gACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACG‑CTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGTTATATGTAACAGATTATTACAAAGGACTTGTCTGAAAGTGCAAGATAGTGAAC‑AATTACCTGCCGTTTCCCCTCCCACTATAACAATTGCGCGTATg > 1:38600/1‑251 (MQ=255) aaCATATCGCCGTTAAGCCATCACCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACG‑CTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGTTATATGTAACAGATTATTACAAAGGACTTGTCTGAAAGTGCAAGATAGTGAAC‑AATTACCTGCCGTTTCCCCTCCCACTATAACAATTGCGCGTATGTTTTTTATACATAACGCGAGAAAGCACCCCCGt > 1:48510/1‑251 (MQ=255) gCCATCACCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACG‑CTGGATAACATTTCCCGGCATGGTTGAATTCCCCGCCTCAGTTATATGTAACAGATTATTACAAAGGACTTGTCTGAAAGTGCAAGATAGTGAAC‑AATTACCTGCCGTTTCCCCTCCCACTATAACAATTGCGCGTATGTTTTTTATACATAACGCGAGAAAGCACCCCCGTTAATATGGGATGTaa > 2:287564/1‑250 (MQ=255) cATCCCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCTTTACGTTTTTTGAAAAATTTAACG‑CTGGATAACATTTCCCGGAATGTTTAAATTCCCCGCCTCAGTTATATGTAACAGATTATTACAAAGGACTTGTCTGAAAGTGCAAGATAGTGAAC‑AATTACCTGCCGTTTCCCCTCCCACTATAACAATTGCGCGTATGTTTTTTATACATAACGCGAGAAAGCACCCCCGTTAATATGGGATGTaaaaa < 1:20247/251‑1 (MQ=255) tgagtgcaataAAAAAATCTGCGTTTACGTTTTTTAAAAAATTTA‑CGTCTGAATAAAATTTCCCGGATTGGTTGATTTCCCCGCCCCATTTATATGTAACAGATTATTACAAAGGACTTGTCTGAAAGTGCAAAATAGTGAAC‑AATTACCTGCCGTTTCCCCTCCCACTATAACAATTTCGCGTATGTTTTTAATACATAACGAGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAg < 2:18569/248‑1 (MQ=255) gcagtgAAAAAATCTGACGTTACGTTTTTTGAAAAATTTACCG‑CTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGTTATATGTAACAGATTATTACAAAGGACTTGTCTGAAAGTGCAAGATAGTGAAC‑AATTACCTGCCGTTTCACCTCACACTATAACAATTGCGCGTATGTTTTTTATACATAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAACAAGAGGTAAAAgtgtac > 2:192610/1‑248 (MQ=255) aaaaTCTGCCGTTACGTTTTTGGAAAAATTTAACG‑CTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGTTATATGTAACAGATTATTACAAAGGACTTGTCTGAAAGTGCAAGATAGTGAAC‑AATTACCTGCCGTTTCCCCTCCCACTATAACAATTGCGCGTATGTTTTTTATACATAACGCGAGAAAGCGCCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCaaac < 1:158247/251‑1 (MQ=255) cGGAATGGTTGAATTCCCCGCCTCAGTTATATGTAACCGATTATTACAAAGGACTTGTCTGAAAGTGCAAGATAGTGAAC‑AATTACCTGCCGTTTCCCCTCCCACTATAACAATTGCGCGTATGTTTTTTATACATAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGc > 2:233916/1‑251 (MQ=255) tGAATTCCCCGCCTCAGTTATATGTAACAGATTATTACAAAGGACTTGTCTGAAAGTGCAAGATAGTGAAC‑AATTACCTGCCGTTTCCCCTCCCACTATAACAATTGCGCGTATGTTTTTTATACATAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTAtct > 2:290636/1‑251 (MQ=255) cAGTTATAAGTAACAGATTATTACAAAGGCCTTGTCTGAAAGTGCAAGATAGTGAACCA‑TTCCCTGCCGGTTCCCCTCCCACTATAACAATTGCGCGTATGTTTTTTATACATACCGCGAGAAAGCCCCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAACACCAGCTGAAAGCGTCAGTTTGAACGCTGTCAGACAACCGAAGGCGTTCTAtcttcgcttatcgattg < 2:51213/251‑15 (MQ=255) tatGTAACAGATTATTACAAAGGACTTGTCTGAAAGTGAAAGATAGTGAAC‑AATTACCTGCCGTTTCCCCTCCCACTATAACAATTGCGCGTATGTTTTTTATACATAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTAt > 2:98441/1‑251 (MQ=255) | CATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACG‑CTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGTTATATGTAACAGATTATTACAAAGGACTTGTCTGAAAGTGCAAGATAGTGAAC‑A‑TTACCTGCCGTTTCCCCTCCCACTATAACAATTGCGCGTATGTTTTTTATACATAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTAT > NC_000913/1712429‑1712862 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |