New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4305533	2 (0.040)	19 (0.420) +CGCCGCTTCA	15/468	1.2	95.2%	coding (1065/1986 nt)	yjcS	linear primary‑alkylsulfatase
	?	NC_000913	4324315 =	0 (0.000)					coding (38/1017 nt)	phnD	phosphonate/phosphate ABC transporter periplasmic binding protein

TCGTAATAGCCAAGATAGAAGTTATACACCGCGCGGGCGTTGTGGCTGACAGAACCGTAATAGCCGCGGCTGGCCCAGTTATTGGCAAGTGCAGGCGGCAGCTTAATCATGTCGCCGATTTCATTCATGGTGTAGCCCTGGTTCGCCAGGTGCAGGGTCTGGTCGTGAATGTACTTGATGGTATCGCGGTATTTACCAATATAATCATTGATATGCTTATTGCCCCAGACCGGCCAGGTGTGCGGCATAAACAGCACTTCCGCGTCGTTACCCCACATATCCAGCGTTTCGTTCAGATACTCGGTCCACTTGCTGGTGTCGCGGGTTTTCGCGCCGCGCAGAGTGTAGAAGTTGTGCAGGGTATGCGTGGCGTTCTCGGCGGTACACAGGGCTTTCAGGGCCGGAATATAGAAGTGCATTTCGGCTGGCGCTTCGCTACCTGGGGTCATCAGGAAGTCAAACTCCAGGCCGTCGATAATCATCTTCTCGC  >  NC_000913/4305294‑4305783                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                           tcgtAATAGCCAAGATAGAAGTTATACACCGCGCGGGCGTTGTGGCTGACAGAACCGTAATAGCCGCGGCTGGCCCAGTTATTGGCAAGTGCAGGCGGCAGCTTAATCATGTCGCCGATTTCATTCATGGTGTAGCCCTGGTTCGCCAGGTGCAGGGTCTGGTCGTGAATGTACTTGATGGGATCGCGGTATTTACCAATATAATCATTGATATGCTTATTGCCCCAGACCGGCCAGGTGcgccgcttcac                                                                                                                                                                                                                                                 >  1:353708‑M1/1‑240 (MQ=255)  cgtAATAGCCAAGATAGAAGTTATACACCGCGCGGGCGTTGTGGCTGACAGAACCGTAATAGCCGCGGCTGGCCCAGTTATTGGCAAGTGCAGGCGGCAGCTTAATCATGTCGCCGATTTCATTCATGGTGTAGCCCTGGTTCGCCAGGTGCAGGGTCTGGTCGTGAATGTACTTGATGGTATCGCGGTATTTACCAATATAATCATTGATATGCTTATTGCCCCAGACCGGCCAGGTGTGCGGctgaagc                                                                                                                                                                                                                                                <  1:247941/251‑7 (MQ=255)    tAATAGCTAAGATAGAAGTTATACACCGCGGGGGCGTTGTGGCTGACAGAACCGTAATATCCGCGGCTTGCCCAGTTATTGGCAATTTCAGGCGGCAGCTTAATCATGTCGCCGATTTCATTCATGGTGTATCCCTTGTTCGCCATGTGCAGGGTCTGGTCGTGAAGGTACTTGATGGTATCGCGGTATTTACCAATATAATCATTGATATGCTTAGTTCCCCATACCGGCCAGTTGTGCggtccaagcg                                                                                                                                                                                                                                               <  2:303075/250‑9 (MQ=255)               aTAGACGTTATACACCGCGCGGGCGTTGTGGCTGACAGAACCGTAATAGCAGAGGCTGGCCCAGTTATTGGCAAGTGCAGGCGGCAGCTTAATCATGTCGCCGGTTTCATTCATGGTGTAGCCCTGGTTCGCCCGGTGCAAGGTCTGGTCGTGAATGTACTTGATTGTATCTCGGTATTTACCAATATAATCATTGATATGTTTATTACCCCAGACCGACCAGGAGcgacgctacaatggtgacggccagc                                                                                                                                                                                                                                   >  2:225408‑M1/1‑226 (MQ=255)                                      cGTTGTGGCTGACAGAACCGTAATAGCCGCGGCTGGCCCAGTTATTGGCAAGTGCAGGCGGCAGCTTAATCATGTCGCCGATTTCATTCATGGTGTAGCCCTGGTTCGCCAGGTGCAGGGTCTGGTCGTGAATGTACTTGATGGTATCGCGGTATTTACCAATATAATCATTGATATGCTTATTGCCCCAGACCGGCCAGGTGcgccgcttcactggtgaaggccagcgaggcaattatcttcgcgttcat                                                                                                                                                                                                            >  2:7395‑M1/1‑203 (MQ=255)                                                         gTAATAGCCGCGGCTGGCCCAGTTATTGGCAAGTGCAGGCGGCAGCTTAATCATGTCGCCGATTTCATTCATGGTGTAGCCCTGGTTCGCCAGGTGCAGGGTCTGGTCGTGAATGTACTTGATGGTATCGCGGTATTTACCAATATAATCATTGATATGCTTATTGCCCCAGACCGGCCAGGTGcgccgcttcactggtgaaggccagcgaggcaattatcttagcgttcattcgttttcctcaatgatgg                                                                                                                                                                                         >  1:136619‑M1/1‑184 (MQ=255)                                                                    ggCTGGCCCAGTTATTGGCAAGTGCAGGCGGCAGCTTTATCATGTCGCCGATTTCATTCATGGTGTAGCCCTGGTTCGCCAGGTGCAGGGTCTGGTCGTGAATGTACTTGATGGTATCGCGGTATTTACCAATATAATCATTGATATGCTTATTGCCCCAGACCGGCCAGGTGcgccgcttcactggtgaaggccagcgaggcaattatcttagcgttcattcgttttcctcaatgatggggatgtcaggc                                                                                                                                                                              >  1:182782‑M1/1‑173 (MQ=255)                                                                           ccAGTTATTGGCAAGTGCAGGCGGCAGCTTAATCATGTCGCCGATTTCATTCATGGTGTAGCCCTGGTTCGCCAGGTGCAGGGTCTGGTCGTGAATGTACTTGATGGTATCGCGGTATTTACCAATATAATCATTGATATGCTTATTGCCCCAGACCGGCCAGGTGcgccgcttcactggtgaaggccagcgaggcaattatcttagcgttcattcgttttcctcaatgatggggatgtcaggcagctttc                                                                                                                                                                       >  1:93899‑M1/1‑166 (MQ=255)                                                                                tATTGGCAAGTGCAGGCGGCAGCTTAATCATGTCGCCGATTTCATTCATGGTGTAGCCCTGGTTCGCCAGGTGCAGGGTCTGGTCGTGAATGTACTTGATGGTATCGCGGTATTTACCAATATAATCATTGATATGCTTATTGCCCCAGACCGGCCAGGTGTGCGccgcttcactggtgaaggccagcgaggcaattatcttagcgttcattcgttttcctccatgatggggatgtcaggcagctttcgcg                                                                                                                                                                  >  1:139791‑M1/1‑165 (MQ=255)                                                                                                        tAATCATGTCGCCGATTTCATTCATGGTGTAGCCCTGGTTCGCCAGGTGCAGGGTCTGGTCGTGAATGTACTTGATGGTATCGCGGTATTTACCAATATAATCATTGATATGCTTATTGCCCCAGACCGGCCAGGTGcgccgcttcactggtgaaggccagcgaggcaattatcttagcgttcattcgttttcctcaatgatggggatgtcaggcagctttcgcgttctcttcgacgcggttaatgctg                                                                                                                                            <  1:7395‑M1/249‑113 (MQ=255)                                                                                                                                 ggTGTAGCCCTGGTTCGCCAGGTGCAGGGTCTGGTCGTGAATGTACTTGATGGTAGCGCGGTATTTACCAATATAATCATTGATATGCTTATTGCCCCAGGCCGGCCAGGTGcgccgcttcactggtgaagggcagcgaggcaattatcttagcgttcattcgttttcctcaatgatggggatgtcaggcagctttcgcgttctcttcgacgcggttaatgctgcggtagagatggtcaaaacggtcgtta                                                                                                                 <  2:353708‑M1/251‑140 (MQ=255)                                                                                                                                  gtgtAGCCCTGGTTCGCCAGGTGCAGGGTCTGGTCGTGAATGTACTTGATGGTATCGCGGTATTTACCAATATAATCATTGATATGCTTATTGCCCCAGACCGGCCAGGTGcgccgcttcactggtgaaggccagcgaggcaattatcttagcgttcattcgttttcctcaatgatggggatgtcaggcagctttcgcgttctcttcgacgcggttaatgctgcggtagagatggtcaaaacgttcgttat                                                                                                                >  1:69321‑M1/1‑111 (MQ=255)                                                                                                                                                          aGGGTCTGGTCGTGAATGTACTTGATGGTATCGCGGTATTTACCAATATAATCATTGATATGCTTATTGCCCCAGACCGGCCAGGTGcgccgcttcactggtgaaggccagcgaggcaattatcttagcgttcattcgttttcctcaatgatggggatgtcaggcagctttcgcgttctctt                                                                                                                                                             >  1:220094‑M1/1‑87 (MQ=255)                                                                                                                                                          aGGGTCTGGTCGTGAATGTACTTGATGGTATCGCGGTATTTACCAATATAATCATTGATATGCTTATTGCCCCAGACCGGCCAGGTGcgccgcttcactggtgaaggccagcgaggcaattatcttagcgttcattcgttttcctcaatgatggggatgtcaggcagctttcgcgttctctt                                                                                                                                                             <  2:220094‑M1/182‑96 (MQ=255)                                                                                                                                                                                tGATGGTATCGCGGTATTTACCAATATAATCATTGATATGCTTATTGCCCCAGACCGGCCAGGTGTGCGccgcttcactggtgaaggccagcgaggcaattatcttagcgttcattcgttttcctcaatgatggggatgtcaggcagctttcgcgttctcttcgacgcggttaatgctgcggtagagatggtcaaaacgttcgttatcaaactgttggctgctgccgtcgtagaagacgtgcccctggc                                                                    <  1:222906‑M1/249‑181 (MQ=255)                                                                                                                                                                                            gggatttACCAATATAATCATTGATATGCTTATTGCCCCAGACCGGCCAGGTGTGCGccgcttcactggtgaaggccagcgaggcaattatcttagcgttcattcgttgtcctcaatgatggggatgtcaggcagctttcgcgttctcttcgacgcggttaatgctgcggtagagatgggcaaaacggtcgttatcaaactgtgggcggctgccggcgtagaagactggcccctggcgcagggc                                                             <  2:232092‑M1/241‑188 (MQ=255)                                                                                                                                                                                            ggTATTTACCAATATAATCATTGATATGCTTATTGCCCCAGACAGGCCAGGTGTGCGccgcttcactggtgaaggccagcgcggcaattatcttagcgttcattcgttttcctcaatgatggggatgtcaggcagctttcgcgttctcttcgacgcggttaatgctgcggtagagatggtcaaaacgttcgttatcaaactgttggctgctgccgtcgtagaagacgtgccactggcgcagggc                                                             >  1:232092‑M1/1‑57 (MQ=255)                                                                                                                                                                                                     cAATATAATCATTGATATGCTTATTGCCCCAGACCGGCCAGGTGcgccgcttcactggtgaaggccagcgaggcaattatcttagcgttcattcgttttcctcaatgatggggaggtcaggcagcgttcgcgttctcttctacgcggtgaatgctgcggtagagatgggcaaaacgttcgttatcaaacttttggctgctgccgtcgtagaagacgtgcccctggcgcagggcgacgatgcgttcgcagta                                             <  1:225408‑M1/251‑208 (MQ=255)                                                                                                                                                                                                          taATCATTGATATGCTTATTGCCCCAGACCGGCCAGGTGTGCGccgcttcactggtgaaggccagcgaggcaattatcttagcgttcattcgttttcctcaatgatggggatgtcaggcagctttcgcgttctcttcgacgcggttaatgctgcggtagagatggtcaaaacgttcgttatcaaactgttggctgctgccgtcgtagaagacgtgcccctggcgcagggcgacgatgcgttcgcagtagcg                                        >  1:299506‑M1/1‑43 (MQ=255)                                                                                                                                                                                                               aTTGATATGCTTATTGCCCCAGACCGGCCAGGTGTGCGccgcttcactggtgaaggccagcgaggcaattatcttagcgttcattcgttttcctcaatgatggggatgtcaggcagctttcgcgttctcttcgacgcggttaatgctgcggtagagatggtcaaaacgttcgttatcaaactgttggctgctgccgtcgtagaagacgtgcccctggcgcagggcgacgatgcgttcgcagtagcgcaggg                                   >  1:412404‑M1/1‑38 (MQ=255)                                                                                                                                                                                                                                      cgtttttcgtgcgccgcttcactggtgaaggccagcgaggcaattatcttagcgttcattcgttttcctcaatgatggggatgtcaggcagctttcgcgttctcttcgacgcggttaatgctgcggtagagatggtcaaaacgttcgttatcaaactgttggctgctgccgtcgtagaagacgtgcccctggcgcagggcgacgatgcgttcgcagtagcgcagggcgtaatccacctgatgcagcgtgac            >  1:27997‑M1/9‑11 (MQ=255)                                                                                                                                                                                                                                      cgtttttcgtgcgccgcttcactggggaaggccagcgaggcaattatcttagcgttcattcgttttcctcaatgatggggatgtcaggcagctttcgcgttctcttcgacgcggttaatgctgcggtagagatggtcaaaacgttcgttatcaaactgttggctgctgccgtcgtagaagacgtgcccctggcgcagggcgacgatgcgttcgcagtagcgcagggcgtaatccacctgatgcagcgtgac            >  1:344935‑M1/9‑11 (MQ=255)                                                                                                                                                                                                                                       gtttttcgtgcgccgcttcactggtgaaggccagcgaggcaattatcttagcgttcattcgttttcctcaatgatggggatgtcaggcagctttcgcgttctcttcgacgcggttaatgctgcggtagagatggtcaaaacgttcgttatcaaactgttggctgctgccgtcgtagaagacgttcccctggcgcagggcgacgatgcgttcgcagtagcgcagggcgtaatccacctgatgcagcgtgacg           >  2:339760‑M1/8‑10 (MQ=255)                                                                                                                                                                                                                                       gtttttcgtgcgccgcttcactggtgaaggccagcgaggcaattatcttagcgttcattcgttttcctcaatgatggggatgtcaggcagctttcgcgttctcttcgacgcggttaatgctgcggtagagatggtcaaaacgttcgttatcaaactgttggctgctgccgtcgtagaagacgtgcccctggcgcagggcgacgatgcgttcgcagtagcgcagggcgtaatccacctgatgcagcgagacg           >  2:255391‑M1/8‑10 (MQ=255)                                                                                                                                                                                                                                         gCCAGGTGcgccgcttcactggtgaaggccagcgaggcaattatcttagcgttcattagttttcctcaatgatggggatgtcaggcagctttcgcgttctcttcgacgcggttaatgctgcggtagagatggtcaaaacgttcgttatcaaactgttggctgctgccgtcgtagaagacgtgcccctggcgcagggcgacgatgcgttcgcagtagcgcagggcgtaatccacctgatgcagcgtgacgac         >  1:383317‑M1/1‑8 (MQ=255)                                                                                                                                                                                                                                              gTGcgccgcttcactggtgaaggccagcgaggcaattatcttagcgttcattcgttttcctcaatgatggggatgtcaggcagctttcgcgttctcttcgacgcggttaatgctgcggtagagatggtcaaaacgttcgttatcaaactgttggctgctgccgtcgtagaagacgtgcccctggcgcagggcgacgatgcgttcgcagtagcgcagggcgtaatccacctgatgcagcgtgacgaccacgg    >  1:210892‑M1/1‑3 (MQ=255)                                                                                                                                                                                                                                                gcgccgtttcactggtgaaggccagcgaggcaattatcttagcgttcattcgttttcctcaatgatggggatgtcaggcagctttcgcgttctcttcgacgcggttaatgctgcggtagagatggtcaaaacgttcgttatcaaactgttggctgctgccgtcgtagaagacgtgcccctggcgcagggcgacgatgcgttcgcagtagcgcagggcgtaatccacctgatgcagcgtgacgaccacggtg  >  1:135831‑M1/1‑1 (MQ=255)                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                           TCGTAATAGCCAAGATAGAAGTTATACACCGCGCGGGCGTTGTGGCTGACAGAACCGTAATAGCCGCGGCTGGCCCAGTTATTGGCAAGTGCAGGCGGCAGCTTAATCATGTCGCCGATTTCATTCATGGTGTAGCCCTGGTTCGCCAGGTGCAGGGTCTGGTCGTGAATGTACTTGATGGTATCGCGGTATTTACCAATATAATCATTGATATGCTTATTGCCCCAGACCGGCCAGGTGTGCGGCATAAACAGCACTTCCGCGTCGTTACCCCACATATCCAGCGTTTCGTTCAGATACTCGGTCCACTTGCTGGTGTCGCGGGTTTTCGCGCCGCGCAGAGTGTAGAAGTTGTGCAGGGTATGCGTGGCGTTCTCGGCGGTACACAGGGCTTTCAGGGCCGGAATATAGAAGTGCATTTCGGCTGGCGCTTCGCTACCTGGGGTCATCAGGAAGTCAAACTCCAGGCCGTCGATAATCATCTTCTCGC  >  NC_000913/4305294‑4305783

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.