New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 401669	0 (0.000)	48 (1.060)	44/472	0.2	99.0%	intergenic (+23/‑78)	iraP/phoA	anti‑adaptor protein IraP/alkaline phosphatase
	?	NC_000913	402398 =	1 (0.020)					coding (652/1416 nt)	phoA	alkaline phosphatase

CCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGGCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGTCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAAACAAAGCACTATTGCACTGGCACTCTTACCGTTACTGTTTACCCCTGTGACAAAAGCCCGGACACCAGAAATGCCTGTTCTGGAAAACCGGGCTGCTCAGGGCGATATTACTGCACCCGGCGGTGCTCGCCGTTTAACGGGTGATCAGACTGCCGCTCT  >  NC_000913/401424‑401910                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                  ccAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGGCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGctta                                                                                                                                                                                                                                               >  1:43991‑M1/1‑246 (MQ=255)   aaaaaGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGGCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacg                                                                                                                                                                                                                                            >  1:374098‑M1/1‑244 (MQ=255)   aaaaaGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGGCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacg                                                                                                                                                                                                                                            >  2:159751‑M1/1‑244 (MQ=255)    aaaaGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGGCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCACCAGCTGcttaacgc                                                                                                                                                                                                                                           >  1:280975‑M1/1‑243 (MQ=255)    aaaaGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGGCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgc                                                                                                                                                                                                                                           >  1:118265‑M1/1‑243 (MQ=255)           gaagaGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGGCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgcc                                                                                                                                                                                                                                    >  1:464843‑M1/1‑236 (MQ=255)             agagTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGGCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAACAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccg                                                                                                                                                                                                                                   >  1:98864‑M1/1‑234 (MQ=255)               agTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGGCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacg                                                                                                                                                                                                                                >  1:110768‑M1/1‑232 (MQ=255)                                                    gaTTATCGTCACTGCAATGCTTCGAAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGGCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaac                                                                                                                                                                                           <  2:6637‑M1/251‑57 (MQ=255)                                                       tATCGTCACTGCAATGCTTCGCACTATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGGCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGAGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgatacgcttggcggcggcgcaaaaacctttgctgaaccggc                                                                                                                                                                                        >  2:132828‑M1/1‑192 (MQ=255)                                                                    aTGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGGCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtga                                                                                                                                                                            >  1:373096‑M1/1‑179 (MQ=255)                                                                            cAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGGCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcaggg                                                                                                                                                                   <  2:110768‑M1/251‑81 (MQ=255)                                                                             aaTATGGCGCAAAATGACCAACAGCGGTTGATTGATCCGGTAGAGGGGGCGCTGTACGAGGTAAAGCCCGCTACCAGCATTCCTGCCGACGATAAGGTGCTGCTGCGCGATTCCGTAACGAAGTTATTGAAGCACCCTGGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcaggg                                                                                                                                                                   >  1:226488‑M1/1‑170 (MQ=255)                                                                                              ccAACAGCGGTTGATTGATCAGGTAGAGGGGGCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaac                                                                                                                                                  >  2:57380‑M1/1‑153 (MQ=255)                                                                                               cAACAGCGGTTGATTGATCAGGTAGAGGGGGCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggagaatggcagggaaaaacgctgcgtgaac                                                                                                                                                  >  2:248472‑M1/1‑152 (MQ=255)                                                                                                      ggTTGATTGATCAGGTAGAGGGGGCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacagg                                                                                                                                         <  1:248472‑M1/251‑107 (MQ=255)                                                                                                                                 tGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcagttggtgagcgatg                                                                                                              >  1:53167‑M1/1‑118 (MQ=255)                                                                                                                                  ggacgAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCGGCGGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCTTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcatttggtgagcgag                                                                                                               <  2:283122‑M1/247‑133 (MQ=255)                                                                                                                                  gTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcagttggtgagcgat                                                                                                               <  2:374098‑M1/249‑133 (MQ=255)                                                                                                                                    aCGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGGGCTCCTGCGCGAATCCGTAAAGAAATTATTGAAGCATCCCCGTCAGTAAAAAGTTACTCTTTTCCACAGCTGcttcacgctcgtcccgacgttacgcttggcggcggcgcacaaccctttgctgaaacggcaaccgctggtgaaaggcagggaaaaacgctgcgtgaccaggcacaggcgcgtggttgtcagttggtgagcgatgctg                                                                                                           >  1:306705‑M1/1‑115 (MQ=255)                                                                                                                                       aGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcagttggtgagcgatgctgcct                                                                                                        <  2:43991‑M1/251‑140 (MQ=255)                                                                                                                                           aaaGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttgcgcttgtcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacagtcgcgtggttatcagttggtgagcgatgctgcctcact                                                                                                    <  1:64902‑M1/251‑144 (MQ=255)                                                                                                                                           aaaGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcagttggtgagcgatgctgcctcac                                                                                                     <  1:32141‑M1/250‑143 (MQ=255)                                                                                                                                                ccGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcagttggtgagcgatgctgcctcactgaatt                                                                                               <  2:373096‑M1/251‑149 (MQ=255)                                                                                                                                                  gATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcagttggtgagcgatgctgcctcactgaattcg                                                                                             >  2:5102‑M1/1‑101 (MQ=255)                                                                                                                                                           aTTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttagcagttggtgagcgatgctgcttcactgaattcggtgacggaa                                                                                    <  2:78222‑M1/251‑160 (MQ=255)                                                                                                                                                                 gacgacGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaccaggcacaggggcgtggttatcagttggtgagcgatgctgcctcactgaattcggagacggaagcgaat                                                                              >  2:353270‑M1/1‑86 (MQ=255)                                                                                                                                                                      cgaTACGGAGCTGCTGCGCGATTCCGTAAAGAAGTTATTGAAGCATCCTCGTCAGGAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggccgggaaaaacgctgcgtgaacaggcacaggcgcgtgggtatcagttggtgagcgatgctgcctcactgaattcggggacggaagcgcatcagc                                                                          >  2:429‑M1/1‑81 (MQ=255)                                                                                                                                                                      cgaTACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcagttggtgagcgatgctgcctcactgaattcggtgacggaagcgaatcagca                                                                         <  1:57380‑M1/251‑171 (MQ=255)                                                                                                                                                                                  gctgcGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgcgcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcagttggtgagcgatgctgcctcactgaattcggtgacggaagcgaatcagcaaaaacccctg                                                               <  1:279040‑M1/249‑181 (MQ=255)                                                                                                                                                                                         gATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcagttggtgagcgatgctgcctcactgaattcggtgacggaagcgaatcagcaaaaacccctgcttggcctg                                                      <  2:345487‑M1/251‑190 (MQ=255)                                                                                                                                                                                               gTAAAGAAGTGATTGAAGCATCCTCGGCAGTAAAAAGTTAATCTGTTCAACAGCTGtttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaattgcagggaaaaacgctgcgtgaacaggcacaggcgcgtggtgatcagttggtgagcgatgctgcctcactgaatgctgtgacggaagcgaatcagcaaaatcccctgcttggcctgtttgct                                                <  2:280975‑M1/251‑196 (MQ=255)                                                                                                                                                                                                 aaaGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcagttggtgagcgatgctgcctcactgaattcggtgacggaagcgaatcagcaaaaacccctgcttggcctgtttgctg                                               <  1:469658‑M1/250‑197 (MQ=255)                                                                                                                                                                                                 aaaGAAGTGATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcagttggtgagcgatgctgcctcactgaattcggtgacggaagcgaatcagcaaaaacccctgcttggcctgtttgcgga                                              <  2:320274‑M1/251‑198 (MQ=255)                                                                                                                                                                                                      agTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcagttggtgagcgatgctgcctcactgaattcggtgacggaagcgaatcagcaaaaaaccctgcttggcctgtttgctgacggc                                          >  2:148603‑M1/1‑49 (MQ=255)                                                                                                                                                                                                         tATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaccggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcggggttatcagttggtgagcgatgctgcctccctgaattcggtgacggaagcgaatcagcaaaaacccctgcttggcctgtttgctgacggcaat                                       >  2:425901‑M1/1‑46 (MQ=255)                                                                                                                                                                                                              cctttccgatcccattaaaaagttaatctttTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcagttggtgagcgatgctgcctcactgaattcggtgacggaagcgaatcagcaaaaacccctgcttggcctgtttgctgacggcaatatgcca                                 <  2:472179‑M1/236‑211 (MQ=255)                                                                                                                                                                                                                  aTCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcagttggtgagcgatgctgcctcactgaattcggtgacggaagcgaatcagcaaaaacccctgcttggcctgtttgctgacggcaatatgccagtgc                             >  1:99676‑M1/1‑37 (MQ=255)                                                                                                                                                                                                                     cTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcagttggtgagcgatgctgcctcactgaattcggcgacggaagcgaatcagcaacaacccctgcttggcctgtttgctgacggcaatatgcccgtgcgct                          >  2:265722‑M1/1‑34 (MQ=255)                                                                                                                                                                                                                       cGTCAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcagttggtgagcgatgctgcctcactgaattcggtgacggaagcgaatcagcaaaaacccctgcttggcctgtttgctgacggcaatatgccagtgcgctg                         <  2:91828‑M1/250‑219 (MQ=255)                                                                                                                                                                                                                          cAGTAAAAAGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcagttggtgagcgatgctgcctcactgaattcggtgacggaagcgaatcagcaaaaacccctgcttggcctgtttgctgacggcaatatgcca                                 >  1:472179‑M1/1‑29 (MQ=255)                                                                                                                                                                                                                             tAAAAAGTTAATCTTTTCAACAGCTGcttaacgcccgtgccgaagttacgcttgacggcggcgcaaaaacatttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacagccgcgtggttatcagttggtgagcgatgctgcctcactgaattcggtgacggaagcgaatcagcaaaaacccctgcttggcctgtttgctgacggcaatatgccagtgcgctggctagg                   >  1:423890‑M1/1‑26 (MQ=255)                                                                                                                                                                                                                              aaaaaGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcagttggtgagcgatgctgcctcactgaattcggtgacggaagcgaatcagcaaaaacccctgcttggcctgt                                                     >  2:232217‑M1/1‑25 (MQ=255)                                                                                                                                                                                                                              aaaaaGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcagttggtgagcgatgctgcctcactgaattcggtgacggaagcgaatcagcaaaaacccctgcttggcctgt                                                     <  1:232217‑M1/215‑191 (MQ=255)                                                                                                                                                                                                                                 aaGTTAATCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcagttggtgagcgatgctgcctcactgaattcggtgacggaagcgaatcagcaaaaacccctgcttggcctgtttgctgacggcaatatgccagtgcgctggctaggaccg               >  1:279124‑M1/1‑22 (MQ=255)                                                                                                                                                                                                                                      aaTCTTTTCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcagttggtgagcgatgctgcctcactgaattcggtgacggaagcgaatcagcaaaaacccctgcttggcctgtttgctgacggcaatatgccagtgcgctggctaggaccgaaagc          <  1:425901‑M1/250‑234 (MQ=255)                                                                                                                                                                                                                                           tttCAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacaggcgcgtggttatcagttggtgagcgatgctgcctcactgaattcggtgacggaagcgaatcagcaaaaacccctgcttggcctgtttgctgacggcaatatgccagtgcgctggctaggaccgaaagcaacg      <  1:91837‑M1/249‑238 (MQ=255)                                                                                                                                                                                                                                              cAACAGCTGcttaacgctcgtgccgacgttacgcttggcggcggcgcaaaaacctttgctgaaacggcaaccgctggtgaatggcagggaaaaacgctgcgtgaacaggcacagtcgcgtggttatcagttggtgagcgatgctgcctcactgaattcggtgacggaagcgaatcagcaaaaacccctgcttggcctgtttgctgacggcaatatgccagtgcgctggctaggaccgaaagcaacgtacc  >  1:391383‑M1/1‑9 (MQ=255)                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                  CCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGGCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGTCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAAACAAAGCACTATTGCACTGGCACTCTTACCGTTACTGTTTACCCCTGTGACAAAAGCCCGGACACCAGAAATGCCTGTTCTGGAAAACCGGGCTGCTCAGGGCGATATTACTGCACCCGGCGGTGCTCGCCGTTTAACGGGTGATCAGACTGCCGCTCT  >  NC_000913/401424‑401910

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.