New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 275508	0 (0.000)	29 (0.830)	26/466	0.4	100%	coding (184/1404 nt)	mmuP	S‑methyl‑L‑methionine transporter
	?	NC_000913	372749 =	0 (0.000)					coding (635/810 nt)	mhpD	2‑hydroxypentadienoate hydratase

CATTGAATGGGTACTTCCGGCGCTGGAAGTGGTGGGGAGCCGCATTCGCGACTGGTCGATTCAGTTTGTCGATACCGTGGCAGATAACGCCTCCTGTGGGGTGTATGTCATCGGCGGTCCGGCGCAACGTCCGGCGGGGTTAGACCTGAAAAACTGCGCCATGAAGATGACGCGTAATAACGAAGAGGTTTCTAGCGGGCGCGGCAGCGAATGCCTGGGACATCCGCTTAATGCGGCCGTCTGGCTGGCACG‑CAAAATGGCCAGTCTGGGTGAACCGCTGCG‑CACCGGAGATATCATTCTTACCGGGGCATTAGGTCCGATGGTGGCGGTGAATGCGGGCGATC‑GTTTTGAAGCCCATATTGAAGGCATAGGTTCAGTTGCTGCGACATTTTCAAGCGCAGCCCCAAAAGGAAGTCTGTCATGAGTAAGCGTAAAGTCGCCATTATCGGTTCTGGCAACATTGGTACCGATCTGATGATTAAAATTTTGCGTCACGGTC  >  NC_000913/372501‑372999                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                              ttaacaaacgcggtataacaaaccttctttggatgtttagatgtccatacgtttagaaggttatatgcaaacaacacaacaaaatgcgccactgaagcgcacaatgaaaacgcgtcacctgattatgctttccttgggcggcgtgattggcacaggattattcttcaataccgggtacatcatttccaccactggagcggcgggaacgctgcttgcctatttgattggtgcgctggtggtctggctggccc                                                                                                                                                                                                                                                             >  1:100907‑M2/249‑249 (MQ=255)      aaacgcggtataacaaaccttctttggatgtttagatgtccatacgtttagaaggttatatgcaaacaacacaacaaaatgcgccactgaagcgcacaatgaaaacgcgtcacctgattatgctttccttgggcggcgtgattggcacaggattattcttcaataccgggtacatcatttccaccactggagcggcgggaacgctgctggcctatctgattggtgcgctggtggtctggctggCACG‑Caaa                                                                                                                                                                                                                                                       <  1:262205‑M2/8‑1 (MQ=255)              tataacaaaccttctttggatgtttagatgtccatacgtttagaaggttatatgcaaacaacacaacaaaatgcgccactgaagcgcacaatgaaaacgcgtcacctgattatgctttccttgggcggcgtgattggcacaggattattcttcaataccgggtacatcatttccaccactggagcggcggggaagctgctggcctatttgattggggcgctgggggtctggctggCACG‑CAAAAAGGcc                                                                                                                                                                                                                                                 >  1:279286‑M2/236‑249 (MQ=255)               ataacaaaccttctttggatgtttagatgtccatacgtttagaaggttatatgcaaacaacacaacaaaatgcgccactgaagcgcacaatgaaaacgcgtcacctgattatgctttccttgggcggcgtgattggcacaggattattcttcaataccgggtacatcatttccaccactggagcggcggggacgctgccggcccctctgatttgtgcgctgggggtcgtgctggCACGCCaaaatgccagg                                                                                                                                                                                                                                               >  2:41450‑M2/235‑246 (MQ=255)                   caaaccttctttggatgtttagatgtccatacgtttagaaggttatatgcaaacaacacaacaaaatgcgccactgaagcgcacaatgaaaacgcgtcacctgattatgctttccttgggcggcgtgattggcacaggattattcttcaataccgggtacatcatttccaccactggagcggcgggaacgctgtctggctatctgattggtgcgctggtggtctggctggCACG‑CCAAAAGGCCAGTCTgg                                                                                                                                                                                                                                          >  2:362980‑M2/231‑251 (MQ=255)                                        gatgtccatacgtttagaaggttatatgcaaacaacacaacaaaatgcgccactgaagcgcacaatgaaaacgcgtcacctgattatgctttccttgggcggcgtgattggcacaggattatccttcaataccgggtacatcatttccaccactggagcggcgggaacgcggctggcctatctgattggtgcgctggtggtcgggctggCACG‑CAAAATGGCCAGTCTGGGTGAACCGCTGCG‑CACCGgag                                                                                                                                                                                                                    <  1:373474‑M2/42‑1 (MQ=255)                                                tacgtttagaaggttatatgcaaacaacacaacaaaatgcgccactgaagcgcacaatgaaaacgcgtcacctgattatgctttccttgggcggcgtgattggcacaggattattcttcaataccgggtacatcatttccaccactggagcggcgggaaagctgctggcctctctgatttgggcgctggtggtctggctggCGCG‑CAAAATAGGCAGTCTGGGGGGAACGCTGCG‑CACCGGGGAAATCAtt                                                                                                                                                                                                            >  1:285656‑M2/202‑251 (MQ=255)                                                 acgtttagaaggttatatgcaaacaacacaacaaaatgcgccactgaagcgcacaatcaaaacgcgtcacctgattatgctttccttgggcggcgtgattggcacaggattattcttcaataccgggtacatcatttccaccactggagcggcgggaacgctgctggcctatctgattggtgcgctggtggtctggctggCACG‑CAAAATGGCCAGTCTGGGTGAACCGCTGCG‑CACCGGAGATATCATTc                                                                                                                                                                                                           <  2:327467‑M2/51‑1 (MQ=255)                                                       agaaggttatatgcaaacaacacaacaaaatgcgccactgaagcgcacaatgaaaacgcgtcacctgattatgctttccttgggcggcgtgattggcacaggattattcttcaataccgggtacatcatttccaccactggagcggcgggaacgctgctggcctatctgattggtgcgctggtggtctggctggCACG‑CAAAATGGCCAGTCTGGGTGAACCGCTGCG‑CACCGGAGATATCATTCTTAcc                                                                                                                                                                                                      <  2:275744‑M2/56‑1 (MQ=255)                                                          aggttatatgcaaacaacacaacaaaatgcgccactgaagcgcacaatgaaaacgcgtcacctgattatgctttccttgggcggcgtgattggcacaggattattcttcaataccgggtacatcatttccaccactggagcggcgggaaagctgctggcccatctgattggtgagctggtgggctgggtggGACG‑CAAAAAGGCCAGTCTGGGGGAAACGCTGCGCCACGGGGGA‑AACATTCTTACCgggg                                                                                                                                                                                                  >  1:297773‑M2/192‑251 (MQ=255)                                                                                 aaaatgcgccactgaagcgcacaatgaaaacgcgtcacctgattatgctttccttgggcggcgtgattggcacaggattattcttcaataccgggtacatcatttccaccactggagcggcgggaacgctgctggcctatctgattggtgcgctggggggctggctggCACG‑CCAAAAGGCCAGTCTGGGGGGACCGCTGCG‑CACCGGAGATATCATTCTTACCGGGGGCTTAGGTCCGATGGGGgcgggg                                                                                                                                                                           >  1:113553‑M2/169‑249 (MQ=255)                                                                                               aagcgcacaatgaaaacgcgtcacctgattaggctttccttgggcggcgtgattggcacaggattattcttcaataccgggtacatcatttccaccactggagcggcgggaacgctgctggcctatctgattggtgcgctggtggtctggctggCACG‑CAAAATGGCCAGTCTGGGTGAACCGCTGCG‑CACCGGAGATATCATTCTTACCGGGGCATTAGGTCCGATGGTGGCGGTGAATGCGTGCGATC‑g                                                                                                                                                            <  2:297773‑M2/97‑1 (MQ=255)                                                                                                                            tatgctttccttgggcggcgtgattggcacaggattattcttcaataccgggtacatcatttccaccactggagcggcgggaaagctgctggcctatctgatttgtgcgccggtggtctggctggCACG‑CAAAATGGCCAGTCTGGGGGAACCGCCGCG‑CACCGGGGAAAACCTTTTTACCGGGGCATTAGGTCCCATGGTGGCGGGGAATGCGGGCGATCGGTTTTGAA‑CCCATATTGAAGGCAtagggt                                                                                                                               >  1:33313‑M2/126‑249 (MQ=255)                                                                                                                             atgctttccttgggcggcgtgattggcacaggattattcttcaataccgggtacatcatttccaccactggagcggcgggaacgctgctggcctatctgattggtgcgctggggggctggccggCACG‑CCAAAAGGCCAGTCTGGGTGAACCGCCGCG‑CACCGGAGATATCATTCTTACCGGGGCATTAGGTTCGATGGTGGCGGGGAATGCGGGCGGTC‑GTTTTGAAGCCCATATTGAAGGCATAGgttg                                                                                                                              >  1:62281‑M2/125‑250 (MQ=255)                                                                                                                             atgctttccttgggcggcgtgattggcacaggattattcttcaataccgggtacatcatttccaccactggagcggcgggaaccctgctggcctatctgattggtgcgctggtggtctggctggCACG‑CAAAATGGCCCGTCTGGGGGAACCGCTGCG‑CACCGGAGCTATCATTCTTTCCGGGGGATTAGGTCCGGTGGGGGGGGGGAATGCGGGCGGTC‑GTTTTGTAGCCCCTATTGAAGGCATAGgttt                                                                                                                              >  1:148125‑M2/125‑250 (MQ=255)                                                                                                                                               gtgattggcacaggattagtcttcaataccgggtacagcatttccaccactggagcggcgggaacgctgctggcctatctgattggtgcgctggtggtctggctggCACG‑CAAAATGGCCAGTCTGGGTGAACCGCTGCG‑CACCGGAGAGATCATTCTTTCCGGGGCATTATGTCCGATGGTGGCGGTGAAGGGGGGTGATC‑GTTTTTAGGTCCATATTGAAGGCATAGGTTCAGTTGCTGCGACATTTTc                                                                                                            <  1:217798‑M2/145‑1 (MQ=255)                                                                                                                                                                                      atttccaccactggagcggcgggaacgctgctggcctatctgattggtgcgctggtggtctggctggCACG‑CAAAATGGCCAGTCTGGGTGAACCGCTGCG‑CACCGGAGATATCATTCTTACCGGGGCATTAGGTCCGATGGTGGCGGTGAATGCGGGCGATC‑GTTTTGAAGCCCATATTGAAGGCATAGGTTCAGTTGCTGCGACATTTTCAAGCGCAGCCCCAAAAGGAAGTCTGTCATGAGTAAGCGt                                                                     <  2:62281‑M2/184‑1 (MQ=255)                                                                                                                                                                                             ccactggagcggcgggaacgctgctggcctatctgattggtgcgctggtggtctggctggCACG‑CAAAATGGCCAGTCTGGGTGAACCGCTGCG‑CACCGGAGATATCATTCTTACCGGGGCATTAGGTCCGATGGTGGCGGTGAATGCGGGCGATC‑GTTTTGAAGCCCATATTGAAGGCATAGGTTCAGTGGCTGCGACATTTTCAAGCGCAGCCCCAAAAGGAAGTCTGTCATGAGTAAGCGTAAAGTCg                                                              <  2:41668‑M2/191‑1 (MQ=255)                                                                                                                                                                                                  ggagcggcgggaacgctgctggcctatctgattggtgcgctggtggtctggctggCACG‑CAAAATGGCCAGTCTGGGTGAACCGCTGCG‑CACCGGAGATATCATTCTTACCGGGGCATTAGGTCCGATGGTGGCGGTGAATGCGGGCGATC‑GTTTTGAAGCCCATATTGAAGGCATAGGTTCAGTTGCTGCGACATTTTCAAGCGCAGCCCCAAAAGGAAGTCTGTCATGAGTAAGCGTAAAGTCGCCAtt                                                         <  1:175159‑M2/196‑1 (MQ=255)                                                                                                                                                                                                      cggcgggaacgctgctggcctatctgattggtgcgctggtggtctggctggCACG‑CAAAATGGCCAGTCTGGGTGAACCGCTGCG‑CACCGGAGATATCATTCTTACCGGGGCATTAGGTCCGATGGTGGCGGTGAATGCGGGCGATC‑GTTTTGAAGCCCATATTGAAGGCATAGGTTCAGTTGCTGCGACATTTTCAAGCGCAGCCCCAAAAGGAAGTCTGTCATGAGTAAGCGTAAAGTCGCCATTATCg                                                     <  1:73422‑M2/200‑1 (MQ=255)                                                                                                                                                                                                      cggcgggaacgctgctggcctatctgattggtgcgctggtggtctggctggCACG‑CAAAATGGCCAGTCTGGGTGAACCGCTGCG‑CACCGGAGATATCATTCTTACCGGGGCATTAGGTCCGATGGTGGCGGTGAATGCGGGCGATC‑GTTTTGAAGCCCATATTGAAGGCATAGGTTCAGTTGCTGCGACATTTTCAAGCGCAGCCCCAAAAGGAAGTCTGTCATGAGTAAGCGTAAAGGCGCCAGTATCg                                                     <  1:310458‑M2/200‑1 (MQ=255)                                                                                                                                                                                                            gaacgctgctggcctatctgattggtgcgctggtggtctggctggCACG‑CAAAATGGCCAGTCTGGGTGAACCGCTGCG‑CACCGGAGATATCATTCTTACCGGGGCATTAGGTCCGATGGTGGCGGTGAATGCGGGCGATC‑GTTTTGAAGCCCATATTGAAGGCATAGGTTCAGTTGCTGCGACATTTTCAAGCGCAGCCCCAAAAGGAAGTCTGTCATGAGTAAGCGTAAAGTCGCCATTATCGGTTCTg                                               >  2:298506‑M2/46‑251 (MQ=255)                                                                                                                                                                                                              cctctgctggcctctctgattggtgcgctggtggtctggctggCACG‑CAAAATGGCCAGTCTGGGTGAACCGCTGCG‑CACCGGAGATATCATTCTTACCGGGGCATTAGGTCCGATGGTGGCGGTGAATGCGGGCGATC‑GTTTTGAAGCCCATATTGAAGGCATAGGTTCAGTTGCTGCGACATTTTCAAGCGCAGCCCCAAAAGGAAGTCTGTCATGAGTAAGCGTAAAGTCGCCATTATCGGTTCTGGc                                             <  2:205147‑M2/208‑1 (MQ=255)                                                                                                                                                                                                                              tgattggtgcgctggtggtctggctggCACG‑CAAAATGGCCAGTCTGGGTGAACCGCTGCG‑CACCGGAGATATCATTCTTACCGGGGCATTAGGTCCGATGGTGGCGGTGAATGCGGGCGATC‑GTTTTGAAGCCCATATTGAAGGCATAGGTTCAGTTGCTGCGACATTTTCAAGCGCAGCCCCAAAAGGAAGTCTGTCATGAGTAAGCGTAAAGTCGCCATTATCGGTTCTGGCAACATTGGTACCGATc                             >  2:63941‑M2/28‑251 (MQ=255)                                                                                                                                                                                                                                attggtgcgctggtggtctggctggCACG‑CAAAATGGCCAGTCTGGGTGAACCGCTGCG‑CACCGGAGATATCATTCTTACCGGGGCATTAGGTCCGATGGTGGCGGTGAATGCGGGCGATC‑GTTTTGAAGCCCATATTGAAGGCATAGGTTCAGTTGCTGCGACATTTTCAAGCGCAGCCCCAAAAGGAAGTCTGTCATGAGTAAGCGTAAAGTCGCCATTATCGGTTCTGGCAACATTGGTACCGATCtg                           <  1:198795‑M2/226‑1 (MQ=255)                                                                                                                                                                                                                                attggtgcgctggtggtctggctggCACG‑CAAAATGGCCAGTCTGGGTGAACCGCTGCG‑CACCGGAGATATCATTCTTACCGGGGCATTAGGTCCGATGGTGGCGGTGAATGCGGGCGATC‑GTTTTGAAGCCCATATTGAAGGCATAGGTTCAGTTGCTGCGACATTTTCAAGCGCAGCCCCAAAAGGAAGTCTGTCAGGAGTAAGCGTAAAGTCGCCATTATCGGTTCTGGCAACATTGGTACCGATCtg                           <  2:119501‑M2/226‑1 (MQ=255)                                                                                                                                                                                                                                      gcgctggtggtctggctggCACG‑CAAAATGGCCAGTCTGGGTGAACCGCTGCG‑CACCGGAGATATCATTCTTACCGGGGCATTAGGTCCGATGGTGGCGGTGAATGCGGGCGATC‑GTTTTGAAGCCCATATTGAAGGCATAGGTTCAGTTGCTGCGACATTTTCAAGCGCAGCCCCAAAAGGAAGTCTGTCATGAGTAAGCGTAAAGTCGCCATTATCGGTTCTGGCAACATTGGTACCGATCTgatgat                      <  2:291708‑M2/231‑1 (MQ=255)                                                                                                                                                                                                                                          tggtggtctggctggCACG‑CAAAATGGCCAGTCTGGGTGAACCGCTGCG‑CACCGGAGATATCATTCTTACCGGGGCATTAGGTCCGATGGTGGCGGTGAATGCGGGCGATC‑GTTTTGAAGCCCATATTGAAGGCATAGGTTCAGTTGCTGCGACATTTTCAAGCGCAGCCCCAAAAGGAAGTCTGTCATGAGTAAGCGTAAAGTCGCCATTATCGGTTCTGGCAACATTGGTACCGATCTGATGATTaaa                  >  2:23768‑M2/16‑250 (MQ=255)                                                                                                                                                                                                                                            gtggtctggctggCACG‑CAAAATGGCCAGTCTGGGTGAACCGCTGCG‑CACCGGAGATATCATTCTGACCGTGGCATTAGGTCCGATGGTGGCGGTGAATGCGGGCGATC‑GGTTTGAAGCCCATATTGAAGGCATAGGTTCAGGTGCTGCGACATTTGCAAGCGCAGTCCCAAAAGGAAGTCTGTCATGAGTAAGCGGAAAGTCGCCATTAGCGGTTCGTGTAACATTGGTACCGATCTGATGATTAAAAtt               <  1:358314‑M2/238‑1 (MQ=255)                                                                                                                                                                                                                                                    gcgggcACG‑CAAAATGGCCAGGCTGGGTGAACCGCTGCG‑CAACGGAGATATCATTCTTACCGGGGCATTAGGTCCGATGGTGGCGGTGAATGCGGGCGATC‑GTTTTGAAGCCCATATTGAAGGCATATGTTCAGTTGCTGCGACATTTTCAAGCGCAGCCCCAAAAGGAAGTCTGTCATGAGTAAGCGTAAAGTCGCCATTATCGGTTCTGGCAACATTGGTACCGATCTGATGATTAAAATTTTGCGTCa       <  2:6055/248‑1 (MQ=255)                                                                                                                                                                                                                                                         cACG‑CAAAATGGCCAGTCTGGGTGAACCGCTGCG‑CACCGGAGATATCATTCTTACCGGGGCATTAGGTCCGATGGTGGCGGTGAATGCGGGCGATC‑GTTTTGAAGCCCATATTGAAGGCATAGGTTCAGTTGCTGCGACATTTTCAAGCGCAGCCCCAAAAGGAAGTCTGTCATGAGTAAGCGTAAAGTCGCCATTATCGGTTCTGGCAACATTGGTACCTATCTGATGATTAAAATTTTGCGTCACGGTc  <  1:340552/251‑1 (MQ=255)                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                              CATTGAATGGGTACTTCCGGCGCTGGAAGTGGTGGGGAGCCGCATTCGCGACTGGTCGATTCAGTTTGTCGATACCGTGGCAGATAACGCCTCCTGTGGGGTGTATGTCATCGGCGGTCCGGCGCAACGTCCGGCGGGGTTAGACCTGAAAAACTGCGCCATGAAGATGACGCGTAATAACGAAGAGGTTTCTAGCGGGCGCGGCAGCGAATGCCTGGGACATCCGCTTAATGCGGCCGTCTGGCTGGCACG‑CAAAATGGCCAGTCTGGGTGAACCGCTGCG‑CACCGGAGATATCATTCTTACCGGGGCATTAGGTCCGATGGTGGCGGTGAATGCGGGCGATC‑GTTTTGAAGCCCATATTGAAGGCATAGGTTCAGTTGCTGCGACATTTTCAAGCGCAGCCCCAAAAGGAAGTCTGTCATGAGTAAGCGTAAAGTCGCCATTATCGGTTCTGGCAACATTGGTACCGATCTGATGATTAAAATTTTGCGTCACGGTC  >  NC_000913/372501‑372999

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.