| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,097,037 | (G)7→9 | intergenic (+208/+528) | ycdU → / ← serX | uncharacterized protein YcdU/tRNA‑Ser |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,097,037 | 1 | . | G | 91.7% | 28.9 / ‑2.2 | 12 | intergenic (+208/+528) | ycdU/serX | uncharacterized protein YcdU/tRNA‑Ser |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base G (0/11); total (1/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.33e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.85e-01 | |||||||||||
| * | NC_000913 | 1,097,037 | 2 | . | G | 91.7% | 27.9 / ‑2.2 | 12 | intergenic (+208/+528) | ycdU/serX | uncharacterized protein YcdU/tRNA‑Ser |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base G (0/11); total (1/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.33e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.85e-01 | |||||||||||
GCATTTTAATAAGTGAGGAAGTGATAGGAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGG‑‑‑A‑‑TTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTG > NC_000913/1096814‑1097280 || gCATTTTAATAAGTGAGGAAGTGATAGGAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCGCGATTGCCCCTCGCCCGAACAGACGTGGGCGGGGGCTCCCGGTTTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTAGGAGTTCGGCTGTAAATATGGCGGTGAGGGGGGGGG‑A‑‑TTGACTCGCTTCGCTCGCCCTGCg < 1:364688/251‑1 (MQ=37) tttAATAAGTGAGGAAGTGATAGGAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGG‑A‑‑TTGACTCGCTTCGCTCGCCCTGCGGGc < 2:254535/250‑1 (MQ=255) gTGAGGAAGTGATAGGAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGG‑‑‑GGGTTGACTCGCTTCGCTCTCCCTGCGGGCAGCCCgatc > 1:230803/1‑248 (MQ=255) tGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTGCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAAGATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCGTCTTTAAATATGGCGGTGAGGGGGGGGG‑A‑‑TTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGc < 1:44/246‑1 (MQ=255) gcgcATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGG‑A‑‑TTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCg < 1:47579/250‑1 (MQ=255) tttGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACTAGCTCTTCTTTAAAGATGGCGGTGAGGGGGGGGG‑A‑‑TTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCtt < 2:230803/250‑1 (MQ=255) gACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCGAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCGCTTCTTTAAATAGGGCGGTGAGGGGGGGGG‑A‑‑TGGAGTCGCTTCGCTCGCCCTGCGGGCAGCCCGGTCACTGCGTTCACGGTCTGTCCAACTGGCGTTCGCCAGTTGGCGACCCCCGGTCGGGGCTTCTCATcccccc < 1:168079/251‑1 (MQ=18) aGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGGGGGCGGGGGCACCCGGGGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTGCTTTAAATAGGGCGGTGAGGGGGGGGG‑A‑‑TTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGgtgt < 2:326877/251‑1 (MQ=18) gtgCCCGATTTCCCCGCGCCCTAACAGACGGGGGGGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGG‑A‑‑TTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGaaaaaa < 2:5678/251‑1 (MQ=14) aggcGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGG‑A‑‑TTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGctct < 1:350498/248‑1 (MQ=255) gTACTTTCGTACTAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGG‑A‑‑TTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTtc < 2:79089/144‑1 (MQ=255) cttcttTAAAGATGGCGGTGAGGGGGGGGGGA‑‑TTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTc < 1:88564/249‑1 (MQ=255) ggggggggggggggggag‑‑‑A‑‑TTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGt < 1:96679/239‑1 (MQ=16) gggggggg‑‑‑A‑‑TTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTTCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTg < 1:53002/250‑1 (MQ=18) || GCATTTTAATAAGTGAGGAAGTGATAGGAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGG‑‑‑A‑‑TTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTG > NC_000913/1096814‑1097280 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |