| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,377,762 | (A)7→6 | intergenic (‑342/+53) | sspA ← / ← rpsI | stringent starvation protein A/30S ribosomal subunit protein S9 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,377,762 | 0 | A | . | 94.1% | 63.5 / ‑1.7 | 18 | intergenic (‑342/+53) | sspA/rpsI | stringent starvation protein A/30S ribosomal subunit protein S9 |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base . (11/5); minor base T (0/1); total (11/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.53e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGGAAAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTATAAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAG > NC_000913/3377535‑3377990 | tGAGCAATACCCGACATTTGGGCAGAAAATTGGATGCTAGATTCCAACATTTTGCGAGCATTGTGGTGAGTCGATGCCGGAAATGGGGAAAAACAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACTTGTCTGTCAGGTGGCAGCCAAAAGCAACTTTCCAGCTTTTACGCTGATTCAGATTTTAGCTATAAAAAA‑CCCGCCGAAGCGGGTTTTTTCGa > 1:209371/1‑250 (MQ=255) aCCCGACATTTGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGAGAGTCGATGCCGGACATGGGGAAAAAGCGCTGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTATAAAAAA‑CCCGCCGAAGCGGGTTTTTTCGAAAATTGttt > 1:170748/1‑251 (MQ=255) gggCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGGAAAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTATAAAAAA‑CCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAg < 1:11879/250‑1 (MQ=255) gatATTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATTCCGGAAATGGGGAAAAAGAGTTGCTTTTTAGTCTGAAATATTTGACTTAGTCCCTTTTTGGCGTTTTGGTTTTTGTTTTACCTTTCTGTCAGGTGGCGTTAAAAAGTATCTTCCCAGTTTTTCCGCGTATTTAGTTCTTTGC‑AAGAAAAAGCCCGCCGAAGCGGGTGTGTTTGAAAATTTTTTCCTGCCGGAGCAGAAGcc < 2:174127/242‑1 (MQ=255) gatAGGTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGGAAAAAGAGATGCGCTTTAGTCTGCAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTATAAAAAA‑CCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGcc > 1:174127/1‑242 (MQ=255) aGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGGAAAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTATAAAAAA‑CCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTg > 2:313554/1‑251 (MQ=255) ccATTGTGGTGAGTCGATGCCGGAAATGGGGAAAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTAATTCAGATTTTAGCTATAAAAAC‑CCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGgacgacgac < 2:285638/251‑1 (MQ=255) aaaTGGGGAAAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTATAAAAAA‑CCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTc > 1:330903/1‑251 (MQ=255) gggggAAAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATGGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTATAAAAAA‑CCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTa < 1:127449/250‑1 (MQ=255) aaaaaGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTATAAAAAA‑Cccgcc > 1:11877/1‑145 (MQ=255) aaaaaGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTATAAAAAA‑Cccgcc < 2:11877/145‑1 (MQ=255) gTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTATAAAAAA‑CCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAACCTGACGAGCGTCACGAGTAACGAAg < 1:106940/251‑1 (MQ=255) cGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTATAAAAAA‑CCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGa > 1:352931/1‑250 (MQ=255) gTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTATAAAAAA‑CCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAgcgc > 1:68507/1‑251 (MQ=255) cagcaCAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTATAAAAAA‑CCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGt > 1:118589/1‑251 (MQ=255) acaagcttccctgttattACTCTGATTCAGATTGTAGCT‑TTAAAAATCCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCTTAGCAGAAGAAAATTAACGTTTGTAGAACTGCGGACGACTACGTGCTTTACGCAGCCCGACTTTCTTACGTTCAACCTGACGAGCGTCACGAGTAACGTAGCCAGCTTTACGCATTTCAGAACGCTGGTACTCGTCGTATTCCATCAGAGCGCGGTTGATACCGt < 1:271474/235‑1 (MQ=255) aGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTATAAAAAA‑CCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGt < 1:271461/251‑1 (MQ=255) aTTCAGATTTTAGCTATAAAAAA‑CCCGCCGCAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCAATCAGAGCGCGGGTGATACAGTGACGGATCGCAACAGCCTGAcc > 2:239399/1‑249 (MQ=255) aTTCAGATTTTAGCTATAAAAAA‑CCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGAcc > 1:151010/1‑249 (MQ=255) aGATTTTAGCTATAAAAAA‑CCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCag > 1:6185/1‑247 (MQ=255) | TGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGGAAAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTATAAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAG > NC_000913/3377535‑3377990 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |