| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,561,368 | C→T | P147S (CCG→TCG) | kptA → | RNA 2'‑phosphotransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,561,368 | 0 | C | T | 97.2% | 105.6 / ‑6.2 | 36 | P147S (CCG→TCG) | kptA | RNA 2'‑phosphotransferase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (21/14); minor base A (0/1); total (21/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.17e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CAGCGATAAAAAGCGTTTTAGTTATTCCAGTGATGGTAGGTGCATCCGCGCGGTTCAGGGGCATTCGACTTCGCAGGTCGCTATTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGCCGGTTATTTTAACCGTCAAAGCACAGGAAATGGCGAAACGAGGCCTCCCTTTCTGGCAAGCGGAAAACGGGGTCTGGCTGACATCAACGGTTGCGGTTGAGTTTCTTGAGTGGTAAGGGAAACTTCCCTCATGAAGTGACCACTTGTAGCTTAAATAATTGCACTGTGCTGATAAGCGCAGCAATAAACAACGCCGCCGCGCCGCAGAGAGTGGCGCTGGCAAGCGCCGATGTTCCATTGCT > NC_000913/4561121‑4561610 | caGCAATAAAAAGCGTTTTAGTTATTCCAGTGATGGTGGGTGCACCCGCGCGGTTCAGGGGCATTCGACTTCGCAGGTCGCTATTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGTCgg < 1:44277/251‑1 (MQ=255) aaaaGCGTTTTAGTTATTCAAGTGATGGTAGGTGCATCCGCGGGGTGCAGGGGCATTCGACGTCGCAGGCCGCTATTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGTCGGTTATTTTa < 2:201218/251‑1 (MQ=255) aaaccGTTTTAGTTATTCCAGTGATGGGAGGAGCATCCGCGCGGTTAAGGGGCCTTTGACTTCGCGGGTCGATATGTCCTTCGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTAACTACGTACATCTCTCTGCTGATGAAGCAACGGCGCGCCAAGTGGGAGCAAGACACGGATCGTCGGTTATTTTa > 2:82512/5‑250 (MQ=255) gCGTTTTAGTTATTCCAGTGATGGTAGGTGCATCCGCGCGGTTCAGGGGCATTCGACTTCGCAGGTCGCTATTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGTCGGTTATTTTAACCg > 1:12017/1‑251 (MQ=255) ttAGTTATTCCAGTGATGGTAGGTGCATCCGCGCGGTTCAGGGGCATTCGACTTCGCAGGTCGCTATTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGTCGGTTATTTTAACCGTCaa > 2:225459/1‑250 (MQ=255) tATTCCAGTGATGGTAGCTGCATCCGCGCGGTTCAGGGGCATTCGACTTCGCAGGTCGCTATTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGTCGGTTATTTTAACCGGCAAAGcac > 2:173468/1‑250 (MQ=255) gtgttGGTAGGTGCACCCGCGGGGTTAAGGGGCATTCGACTTCGCAGGTCCCTATTTCCTTTCCCAAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGTCGGTTATTTTAACCGTCAAAGCACAGGAAATg < 1:193508/247‑1 (MQ=255) tAGGTGCATCCGCGCGGTTCAGGGGCATTCGACTTCGCAGGTCGCTATTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGTCGGTTATTTTAACCGTCAAAGCACAGGAAATGGCGAAAc > 2:179675/1‑251 (MQ=255) tCCGCGCGGTTCAGGGGCATTCGACTTCGCAGGTCGCTATTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGTCGGTTATTTTAACCGTCAAAGCACAGGAAATGGCGAAACGAGGCCTc > 2:45883/1‑251 (MQ=255) ccGCGGGGTTCAGGGGCATTCGCCTTCGCAGGTCGCTATTTCCTTTCCAGAAAAAACCCCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGTCGGTTATTTTAACCGTCAAAGCACAGGAAATGGCGAAACGAGGCCTcc < 1:261869/251‑1 (MQ=255) ggttacAGGGGCTTTCGCCGTCGCAGGTCGTTATTTCTTTTCCCGAAAAACCACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAATTGGGAGCAAGACACGGATCGTCGGTTATTTTAACCGTCAAAGCACAGGAAATGGCGAAACGAGGCCTCCCTTTc < 2:177513/246‑1 (MQ=255) cGACTCCGCGGGTCGTTATTTCCTTGGCCAAAAAACCCCCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGTCGGTTATTTTAACCGTCAAAGCACAGGAAATGGCGAAACGAGGCCTCCCTTTCTGGCAAGCGGaaaa < 1:235283/250‑1 (MQ=255) ttCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGTCGGTTATTTTAACCGTCAAAGCACAGGAAATGGCGAAACGAGGCCTCCCTTTCTGGCAAGCGGAAAACGGGGTCTGGCTGACATCa > 2:58938/1‑250 (MQ=255) tgtcaaaaaaacccccGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGTCGGTTATTTTAACCGTCAAAGCACAGGAAATGGCGAAACGAGGCCTCCCTTTCTGGCAAGCGGAAAACGGGGTCTGGCTGACATCATcggt < 2:33584/236‑1 (MQ=255) aCCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGTCGGTTATTTTAACCGTCAAAGCACAGGAAATGGCGAAACGAGGCCTCCCTTTCTGGCAAGCGGAAAACGGGGTCTGGCTGACATCAACGGTTGCGGTTGAGTTTCTTGAGTGGTAAGGGaa > 1:10551/1‑250 (MQ=255) gCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGTCGGTTATTTTAACCGTCAAAGCACAGGAAATGGCGAAACGAGGCCTCCCTTTCTGGCAAGCGGAAAACGGGGTCTGGCTGACATCAACGGTTGCGGTTGAGTTTCTTGAGTGGTAAGGGAAACTTCCCTCATg < 1:171159/251‑1 (MQ=255) gCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGTCGGTTATTTTAACCGTCAAAGCACAGGAAATGGCGAAACGAGGCCTCCCTTTCTGGCAAGCGGAAAACGGGGTCTGGCTGACATCAACGGTTGCGGTTGAGTTTCTTGAGTGGTAAGGGAAACTTCCCTCATGAAGt < 1:94988/251‑1 (MQ=255) cGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGTCGGTTATTTTAACCGTCACAGCACAGGAAATGGCGAAACGCGGCCTCCCTTTCTGGCAAGCGGAAAACGGGGTCTGGCTGACATCAACGGTTGCGGTTGAGTTTCTTGAGTGGTAAGGGAAACTTCCCTCATGAAGTgc > 2:258543/1‑250 (MQ=255) cGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGTCGGTTATTTTAACCGTCAAAGCACAGGAAATGGCGAAACGAGGCCTCCCTTTCTGGCAAGCGGAAAACGGGGTCTGGCTGACATCAACGGTTGCGGTTGAGTTTCTTGAGTGGTAAGGGAAACTTCCCTCATGAAGTGa < 2:144809/251‑1 (MQ=255) tgaagagaTAAAAGAACAGTGGCTGATTGCAGGTGAGCGTCTCTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGTCGGTTATTTTAACCGTCAAAGCGCAGGAAATGGCGAAACGAGGCCTCCCTTTCTGGCAAGCGGAAAACGGGGTCAGGATGACATCAACGGTTGCGGTTGAGTTTCATGAGTGGTAAGGGAAACTTCCCTCATGAAGTGACCACTTg < 2:55270/246‑1 (MQ=255) tGACGAGATAAAAAAACAGGGGCTGATTGCAGGCGAGAGTCACTACGTACATATATAAGATGATAAAGCAACGGCAGGCAAAGAGGGAGCAAGACACGGATAGTCGGTTATTTTAACCGTCAAAGCACAGGAAATGGCGCAACGAGGCCTCCCTTTCTGGCCAGCGGAAAACGGGGACTGGATGACATCAACGGTGGCGGCTGAGTGTGTGGAGTGGTAAGGGACACTTCCATCATGAAGTGACCACtggg > 2:130838/1‑248 (MQ=255) cGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGTCGGTTATTTTAACCGTCAAAGCACAGGAAATGGCGAAACGAGGCCTCCCTTTCTGGCAAGCGGAAAACGGGGTCTGGCTGACATCAACGGTTGCGGTTGAGTTTCTTGAGTGGTAAGGGAAACTTCCCTCATGAAGTGACCACTTGTAGc > 1:213668/1‑251 (MQ=255) gagaTAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGTCGGTTATTTTAACCGTCAAAGCACAGGAAATGGCGAAACGAGGCCTCCCTTTCTGGCAAGCGGAAAACGGGGTCTGGCTGACATCAACGGTTGCGGTTGAGTTTCTTGAGTGGTAAGGGAAACTTCCCTCATGAAGTGACCACTTGTAGCt > 1:238082/1‑251 (MQ=255) gaTAAAACAACAGGGGCTGATTGCAGGAGAGCGCCACTAAGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGAGGGCGCAAGACACGGATCGTCGGTTATTTTAACCGTCAAAGCACAGGAAATGGCGAAACGCGGCATCCCTTTCTGGCCAGCGGAAAAAGGGGTCTGGCTGACAACAACGGTTGCGGTTGAGGTTCTTGAGTGGTAAGGGAAACTTCCCTCATGAAGTGACCACTTGTAGCtt > 2:35396/1‑250 (MQ=255) cAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGTCGGTTATTTTAACCGTCAAAGCACAGGAAATGGCGAAACGAGGCCTCCCTTTCTGGCAAGCGGAAAACGGGGTCTGGCTGACATCAACGGTTGCGGTTGAGTTTCTTGAGTGGTAAGGGAAACTTCCCTCATGAAGTGACCACTTGTAGCTTAAATAATTGCa < 2:81614/251‑1 (MQ=255) ggCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGTCGGTTATTTTAACCGTCAAAGCACAGGAAATGGCGAAACGAGGCCTCCCTTTCTGGCAAGCGGAAAACGGGGTCTGGCTGACATCAACGGTTGCGGTTGAGTTTCTTGAGTGGTAAGGGAAACTTCCCTCATGAAGTGACCACTTGTAGCTTAAATAATTGCACtgt > 1:25321/1‑251 (MQ=255) tGCAGGGGAGCGTCACTACGTACATCTATCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGTCGGGTATTTTAACCGTCAAAGCACAGGAAATGGCGAAACGAGGCCTCCCTTTCTGGCAAGCGGAAAACGGGGTCTGACTGACATCAACGGTTGCGGTTGAGTTTCTTTAGTGGTAAGGGAAAATTCACTCATGAAGTGACCACTTGTAGCTTAATTAATTGCaatctgctaat > 2:144553/1‑240 (MQ=255) aGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGTCGGTTATTTTAACCGTCAAAGCACAGGAAATGGCGAAACGAGGCCTCCCTTTCTGGCAAGCGGAAAACGGGGTCTGGCTGACATCAACGGTTGCGGTTGAGTTTCTTGAGTGGTAAGGGAAACTTCCCTCATGAAGTGACCACTTGTAGCTTAAATAATTGCACTGTGCTGATAAGCgcagc > 1:79436/1‑251 (MQ=255) aCGTACATCTCTCTGCTGAGGAAGCAACGGCACGCAAAGTGGGACCAAGACACGGATCGTCGGTTATTTTAACCGTCAAAGCACAGGAAATGGCGAAAAGAGGCCTTCCTTTCTGGCAAGCGGAAAACGGGGTCTGGCTGACATCAACGTTTGCGGTTGAGTTTCTTGAGTGGTAAGGGAAACTTCCCTCATGATGTGACCACTTGTAGCTTAAATAATTGCACTGTGCTGATACGCGAAGCAATaaata < 2:55606/250‑3 (MQ=255) cGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGTGAGCAAGACACGGATCGTCTGTTATTTTAGCCGTCAAAGCACATGAAATGGCTAAACGAGGCCTCCCTTTCTGGCAAGCGTAAAACTGGGTCTGGCTGACATCAACGGCTGCGGTTGATTTTCTTGAGGGGTAAGGGAGACTTCCCTCATGAAGTGACCACTTTTAGCTTAAATAATTGCACTGTGCTGATAAGCGCAGCTATAaacaac < 1:179160/251‑1 (MQ=255) tgctgATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGTCGGTTATTTTAACCGTCAAAGCACAGGAAATGGCGAAACGAGGCCTCCCTTTCTGGCAAGCGGAAAACGGGGTCTGGCTGACATCAACGGTTGCGGTTGAGTTTCTTGAGTGGTAAGGGAAACTTCCCTCATGAAGTGACCACTTGTAGCTTAAATAATTGCACTGTGCTGATAAGCGCAGCAATAAACAACGCcgccgcgccg > 2:74384/1‑251 (MQ=255) tgatgaCGCACCGGCACGCAAAGTCGGAGCAAGACACGGATCGTCGGTTCTTTTAACCGTCAAAGCCCAGGACATGGCGAAACGAGCCCTCCCTTTCTGGCAAGCGGAAAACGGGGTCTGGCTGACATCAACGGCTGCGGTTGAGTTTCTTGAGTGGTAAGGGAAACTTACCTCATGAAGTGACCACTTGTAGCTTAAATAATTGCACTGTGCTGATAAGCGCAGCAATAAACAACGCCgccgcgccgc > 2:256540/1‑249 (MQ=255) gaAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGTCGGTTATTTTAACCGTCAAAGCACAGGAAATGGCGAAACGAGGCCTCCCTTTCTGGCAAGCGGAAAACGGGGTCTGGCTGACATCAACGGTTGCGGTTGAGTTTCTTGAGTGGTAAGGGAAACTTCCCTCATGAAGTGACCACTTGTAGCTTAAATAATTGCACTGTGCTGATAAGCGCAGCAATAAACAACGCCGCCGCGCCGCagag > 1:69073/1‑249 (MQ=255) aaCGGCACGCAAAGTGGGAGCAAGACACGGATCGTCGGTTATTTTAACCGTCAAAGCACAGGAAATGGCGAAACGAGGCCTCCCTTTCTGGCAAGCGGAAAACGGGGTCTGGCTGACATCAACGGTTGCGGTTGAGTTTCTTGAGTGGTAAGGGAAACTTCCCTCATGAAGTGACCACTTGTAGCTTAAATAATTGCACTGTGCTGATAAGCGCAGCAATAAACAACGCCGCCGCGCCGCAGAGAGTGgcg > 1:154469/1‑251 (MQ=255) cAAGACACGGATCGACGGCTAGTTGAACCGTCAAAGCTCAGTAAATGGCGAAACGAGCCCTTCCTTGCAGGCAAGCGGAAACCCGGGTCTGGCTGACATCACCGGTTGCGGTTGAGTTTCTTGAGTGGTAAGGTAAACCTCCCGCATGAAGTGACCACTTGTAGCTTAAATAATTGCACTGTGCTGATAAGCGCAGCAATAAACACCTCCGCCGCGCCTCAGAGAGTTGCGCTGGCAATCGCCCATGTTct < 2:88702/251‑2 (MQ=255) acGGATCGTCGGTTATTTTAACCGTCAAAGCACAGGAAATGGCGAAACGAGGCCTCCCTTTCTGGCAAGCGGAAAACGGGGTCTGGCTGACATCAACGGTTGCGGTTGAGTTTCTTGAGTGGTAAGGGAAACTTCCCTCATGAAGTGACCACTTGTAGCTTAAATAATTGCACTGTGCTGATAAGCGCAGCAATAAACAACGCCGCCGCGCCGCAGAGAGAGGCGCTGGCAAGCGCCGATGTTCCATTGCt > 2:168753/1‑251 (MQ=255) | CAGCGATAAAAAGCGTTTTAGTTATTCCAGTGATGGTAGGTGCATCCGCGCGGTTCAGGGGCATTCGACTTCGCAGGTCGCTATTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTACGGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGTGAGCGTCACTACGTACATCTCTCTGCTGATGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGCCGGTTATTTTAACCGTCAAAGCACAGGAAATGGCGAAACGAGGCCTCCCTTTCTGGCAAGCGGAAAACGGGGTCTGGCTGACATCAACGGTTGCGGTTGAGTTTCTTGAGTGGTAAGGGAAACTTCCCTCATGAAGTGACCACTTGTAGCTTAAATAATTGCACTGTGCTGATAAGCGCAGCAATAAACAACGCCGCCGCGCCGCAGAGAGTGGCGCTGGCAAGCGCCGATGTTCCATTGCT > NC_000913/4561121‑4561610 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |