| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 73,328 | G→A | I398I (ATC→ATT) | thiP ← | thiamine ABC transporter membrane subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 73,328 | 0 | G | A | 97.0% | 99.0 / ‑4.3 | 33 | coding (1194/1611 nt) | thiP | thiamine ABC transporter membrane subunit |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (18/14); minor base . (0/1); total (18/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.55e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.83e-01 | |||||||||||
CACCAATCGACAGCACGCATGCAAAGGCCAGCGCCTGCGCCAGTGGACGTTTCAGGGCGCGCAGCTCCACCACTTTTAAGCGTGACCAGCCTTCAATCCCCAGCGACTGACATAACATGCTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGCACTTTCAGCGCATAAGGGATCGCCATTAACGCATTGGTGAAAA‑TCACAATGCCGTCAGCAGATTGTGGCAGGCCGATAG‑TGTTGTTGAGCAGTAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGCGAGGATCAACATGCCGCTCATCTCCAGCACCTGACCCGCCAGCATTTTCTGCCGCGCCCGCAGTTCGCGACTGCTCCATAGCAGCATCATGGTCAGCACTACGCACAATACACCTGCCGCCAGCGCAATACGCAACGAGGTCCAC > NC_000913/73096‑73529 | cACCAATCGACAGCACGCAGGCAAAAGCCAGCGCCTGCGCCAGTGGACGTTTCAGGGCGCGCAGCTCGACCACTTTTAAGCGCGACCATCCTTCAATGCCCAGCGACTGACACAACATACTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGTACTTTCAGCGCATAAGGGATCGCCATTAACGCATTGGTGAAAA‑TCACAATGCCGTCAGCAGATTGCGGCAGGCCAATGG‑TGTTGTTGAGCAGt < 2:22919/251‑1 (MQ=255) cGACAGCACGCAGGCAAAAGCCAGCGCCTGCGCCAGTGGACGTTTCAGGGCGCGCAGCTCGACCACTTTTAAGCGCGACCAGCCTTCAATGCCCAGCGACTGACACAACATACTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGTACTTTCAGCGCATAAGGGATCGCCATTAACGCATTGGTGAAAA‑TCACAATGCCGTCAGCAGATTGCGGCAGGCCAATGG‑TGTTGTTGAGCAGTaaaa > 1:106517/1‑248 (MQ=255) aGCACGCAGGCACAAGCCAGAGCCTGCGCCCGTGGACGTTTCAGGGCGCGCAGCTCGACCACTTTTAAGCGCGACCAGCCTTCAATGCCCAGCGACTGACACAACATACTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGTACTTTCAGCGCATAAGGGATCGCCATTAACGCATTGGTGAAAA‑TCACAATGCCGTCAGCAGATTGCGGCAGGCCAATGG‑AGTTGTTGAGCAGTAAAAAGAAGcc > 2:166586/1‑251 (MQ=255) cACGCAGGCAAAAGCCAGCGCCTGCGCCAGTGGACGTTTCAGGGCGCGCAGCTCGACCACTTTTAAGCGCGACCAGCCTTCAATGCCCAGCGACTGACACAACATACTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGTACTTTCAGCGCATAAGGGATCGCCATTAACGCATTGGTGAAAA‑TCACAATGCCGTCAGCAGATTGCGGCAGGCCAATGG‑TGTTGTTGAGCAGTAAAAAGAAGCCgg < 1:21783/251‑1 (MQ=255) gcaggCAAAAGCCAGCGCCTGCGCCAGTGGACGTTTCAGGGCGCGCAGCTCGACCACTTTTAAGCGCGACCAGCCTTCAATGCCCAGCGACTGACACAACATACTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGTACTTTCAGCGCATAAGGGATCGGCATTAACGCATTGGTGAAAA‑TCACAATGCCGTCAGCAGATTGCGGCAGTGCAATGG‑TGTTGTTGAGCAGTAAAAAGAAGCCGGTAg < 2:254273/247‑1 (MQ=255) aggCAAAAGCCAGCGCCTGCGCCAGTGGACGTTTCAGGGCGCGCAGCTCGACCACTTTTAAGCGCGACCAGCCTTCAATGCCCAGCGACTGACACAACATACTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGTACTTTCAGCGCATAAGGGATCGCCATTAACGCATTGGTGAAAA‑TCACAATGCCGTCAGCAGATTGCGGCAGGCCAATGG‑TGTTGTTGAGCAGTAAAAAGAAGCCGGTAGcc > 1:186676/3‑251 (MQ=255) gCAAAAGCCAGCGCCTGCGCCAGTGGACGTTTCAGGGCGCGCAGCTCGACCACTTTTAAGCGCGACCAGCCTTCAATGCCCAGCGACTGACACAACATACTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGTACTTTCAGCGCATAAGGGATCGCCATTAACGCATTGGTGAAAA‑TCACAATGCCGTCAGCAGATTGCGGCAGGCCAATGG‑TGTTGTTGAGCAGTAAAAAGAAGCCGGTAGCCAg < 2:53527/251‑1 (MQ=255) aaaagCCAGCGCCTGCGCCAGTGGACGTTTCAGGGCGCGCAGCTCGACCACTTTTAAGCGCGACCAGCCTTCAATGCCCAGCGACTGACACAACATACTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGTACTTTCAGCGCATAAGGGATCGCCATTAACGCATTGGTGAAAA‑TCACAATGCCGTCAGCAGATTGCGGCAGGCCAAATG‑TGTTGTTGAGCAGTAAAAAGAAGCCGGTAGCCAGc > 1:211683/5‑250 (MQ=255) aaaagCCAGCGCCTGCGCCAGTGGACGTTTC‑GGGCGCGCAGCTCGACCACTTTTAAGCGCGACCAGCCTTCAATGCCCAGCGACTGACACAACATACTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGTACTTTCAGCGCATAAGGGATCGCCATTAACGCATTGGTGAAAA‑TCACAATGCCGTCAGCAGATTGCGGCAGGCCAATGG‑TGTTGTTGAGCAGTAAAAAGAAGCCGGTAGCCAGcac < 1:119802/247‑1 (MQ=255) aaagCCAGCGCCTGCGCCAGTGGACGTTTCAGGGCGCGCAGCTCGACCACTTTTAAGCGCGACCAGCCTTCAATGCCCAGCGACTGACACAACATACTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGTACTTTCAGCGCATAAGGGATCGCCATTAACGCATTGGTGAAAA‑TCACAATGCCGTCAGCAGATTGCGGCAGGCCAATGG‑TGTTGTTGAGCAGTAAAAAGAAGCCGGTAGCCAGcac > 2:38646/4‑251 (MQ=255) aaagCCACCGCCTGCGCCAGAGGACGCTTCAGGGCGCGCCGCTCGACCACTTTTAAGCCAGACCAGCCTTCAATGCCCAGCGACTGCCACAACATACTGTCGCGGTCGGTGATATCGCGCATCGGGTTTTCCCGTACTTTCAGCGCATAAGGGATCGCCATTAACGCATTGGTGAAAA‑TCACAATGCCGTCAGCAGATTGCGGCAGGCCAATGG‑TGTTGTTGCGCCGTAAAAATCAGCCGGTAACCAGcac > 2:170855/4‑251 (MQ=255) ccAGCGCCTGCGCCAGTGGACGTTTCAGGGCGCGCAGCTCGACCACTTTTAAGCGCGACCAGCCTTCAATGCCCAGCGACTGACACAACATACTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGTACTTTCAGCGCATAAGGGATCGCCATTAACGCATTGGTGAAAA‑TCACAATGCCGTCAGCAGATTGCGGCAGGCCAATGG‑TGTTGTTGAGCAGTAAAAAGAAGCCGGTAGCCAGCACAATc > 1:94499/1‑251 (MQ=255) ccTGCGCCAGTGGAAGTTTCAGGGGGAGCAGCTCGACCCCTTTTAAGCGAGACACGCCTTCAATGCCCAGCGACTGACACAACATACTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGTAATTTCAGCGCATAAGGGATCGCCATTAACGCATTGGTGAAAA‑TCACAATGCCGTCAGCAGATTGCGGCAGGCCAATAG‑GGTTGTTGAGCAGTAAAAAGACGCCGGTAACCCGCCCACTCCCCGGc > 2:259086/1‑251 (MQ=255) gcgcCAGTGGACGTTTCAGGGCGCGCAGCTCGACCACTTTTAAGCGCGACCAGCCTTCAATGCCCAGCGACTGACACAACATACTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGTACTTTCAGCGCATAAGGGATCGCCATTAACGCATTGGTGAAAA‑TCACAATGCCGTCAGCAGATTGCGGCAGGCCAATGG‑TGTTGTTGAGCAGTAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCa < 1:158149/249‑1 (MQ=255) ggACGTTTCAGGGCGCGCAGCTCGACCACTTTTAAGCGCGACCAGCCTTCAATGCCCAGCGACTGACACAACATACTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGTACTTTCAGCGCATAAGGGATCGCCATTAACGCATTGGTGAAAA‑TCACAATGCCGTCAGCAGATTACGGCAGGCCAATGG‑TGTTGTTGAGCAGTAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGCGAGGAt > 1:44298/1‑251 (MQ=255) cgcgcAGCTCGACCACTTTTAAGCGCGACCAGCCTTCAATGCCCAGCGACTGACACAACATACTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGTACTTTCAGCGCATAAGGGATCGCCATTAACGCATTGGTGAAAA‑TCACAATGCCGTCAGCAGATTGCGGCAGGCCAATGG‑TGTTGTTGAGCAGGAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGCGAGGATCAACATGCCGCTc > 1:192086/1‑251 (MQ=255) cgaccacTTTTAAGCGCGACCAGCCTTCAATGCCCAGCGACTGACACAACATACTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGTACTTTCAGCGCATAAGGGATCGCCATTAACGCATTGGTGAAAA‑TCACAATGCCGTCAGCAGATTGCGGCAGGCCAATGG‑TGTTGTTGAGCAGTAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGCGAGGATCAACATGCCGCTCATCTCCa < 1:20842/247‑1 (MQ=255) gaccacTTTTAAGCGCGACCAGCCTTCAATGCCCAGCGACTGACACAACATACTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGTACTTTCAGCGCATAAGGGATCGCCATTAACGCATTGGTGAAAA‑TCACAATGCCGTCAGCAGATTGCGGCAGGCCAATGG‑TGTTGTTGAGCAGTAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGCGAGGATCAACATGCCGCTCATCTCCAGcg < 1:132009/250‑2 (MQ=255) tttAAGCGCGCCCAGCCTTCAATGCCCAGCGACTGACACAACATACTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGTACTTACAGCGCATAAGGGATCGCCATTAACGCATTGGTGAAAA‑TCACAATGCCGTCAGCAGATTGCGGCAGGCCAATGG‑TGTTGTTGAGCAGTAAAAAGAAGCCGGTATCCAGCACAATCCCCGGCATGGCGAGGATCAACATGCCGCTCATCTCCAGCGCCTGAc < 2:203310/250‑1 (MQ=255) tAAGCGCGACCAGCCTTCAATGCCCAGCGACTGACACAACATACTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGTACTTTCAGCGCATAAGGGATCGCCATTAACGCATTGGTGAAAA‑TCACAATGCCGTCAGCAGATTGCGGCAGGCCAATGG‑TGTTGTTGAGCAGTAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGCGAGGATCAACATGCCGCTCATCTCCAGCGCCTGAccc < 1:226151/250‑1 (MQ=255) aaaGCGCGACCAGCCTTCAAGGCCCAGCGACTGACACAACATACTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGTACTTTCAGCGCATAAGGGATCGCCATTAACGCATTGGTGAAAA‑TCACAATGCCGTCAGCAGATTGCGGCAGGCCAATGG‑TGTTGTTGAGCAGTAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGCGAGGATCAACATGCCGCTCATCTCCAGCGCCTGACCCg < 2:44298/250‑1 (MQ=255) aCTGACACAACATACTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGTACTTTCAGCGCATAAGGGATCGCCATTAACGCATTGGTGAAAA‑TCACAATGCCGTCAGCAGATTGCGGCAGGCCAATGG‑TGTTGTTGAGCAGTAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGCGAGGATCAACATGCCGCTCATCTCCAGCGCCTGACCCGCCAGCATTTTCTGCCGCGCCCGAAGTTcg > 1:145998/1‑251 (MQ=255) gACACAACATACTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGTACTTTCAGCGCATAAGGGATCGCCATTAACGCATTGGTGAAAA‑TCACAATGCCGTCAGCAGATTGCGGCAGGCCAATGG‑TGTTGTTGAGCAGTAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGCGAGGATCAACATGCCGCTCATCTCCAGCGCCTGACCCGCCAGCATTTTCTGCCGCGCCCGAAGTTcgcg > 2:30629/1‑250 (MQ=255) gtgttaatatGGCGCTTCGGGTTTTCCAGTACTTTCAGCGAAAAAGGGTTCGCCATTACCGCATTGGTGAAAA‑GCACAATGCGGTCAGAAGATGGCGGAAGGCCAATGT‑TGTTGTTGAGAAGTAAAAAGAAGCCGGTAGCCAGCACAACCCCCGGCAGGGCGAGAAGCAACATGCCGCTCACCTCCAGCGCCTGACCCGCCAGCATTTTCTGCCGCGCCCGAAGTTCGCGACTGCTCCATAGCAGcatcat < 1:257208/245‑1 (MQ=255) gcATCGGGTTTTCCAGTACTTTCAGCGCATAAGGGATCGCCATTAACGCATTGGTGAAAA‑TCACAATGCCGTCAGCAGATTGCGGCAGGCCAATGG‑TGTTGTTGAGCAGTAAAAAAAAGCCGGTAGCCAGCACAATCCCCGGCATGGCGAGGATCAACATGCCGCTCATCTCCAGCGCCTGACCCGCCAGCATTTTCTGCCGCGCCCGAAGTTCGCGACTGCTCCATAGCAGCATCATGGTCAGCACTACg > 1:48206/1‑251 (MQ=255) catcggtttgtcgattattttCAGCGCATAAGGGTTCGCCTTTACCTCATTG‑TGAAAAATCAAAATCCCGTCAGCAGATGGGGGCGGGCC‑ATGGGTGTTGTTGAGCAGTAAAAAAAGGCCGGTGGCCAGCAAAATCCCGGGCATGGCGAGGATAAACGGCCCGCTCACCCCCAGCGCCTGACCCGCCAGCATTTTCGGCCGCGCCCGAAGTTCGCGACTGCTCCATAGCAGCATCATGGTCAGCACTACGc < 2:167515/233‑1 (MQ=255) cGGGTTTTCCAGTACTTTCAGCGCATAAGGGATCGCCATTAACGCATTGGTGAAAA‑TCACAATGCCGTCAGCAGATTGCGGCAGGCCAATGG‑TGTTGTTGAGCAGTAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGCGAGGATCAACATGCCGCTCATCTCCAGCGCCTGACCCGCCAGCATTTTCTGCCGCGCCCGAAGTTCGCGACTGCTCCATAGCAGCATCATGGTCAGCACTACGcac > 1:209332/1‑250 (MQ=255) aTAAGGGATCGCCATTAACGCATTGGTGAAAG‑TCACAATGCCGTCAGCAGATTGCGGCAGGCCAATGG‑TGTTGTTGAGCAGTAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGCGAGGATCAACATGCCGCTCATCTCCAGCGCCTGACCCGCCAGCATTTTCTGCCGCGCCCGAAGTTCGCGACTGCTCCATAGCAGCATCATGGTCAGCACTACGCACAATACACCTGCCGCCAGCGCAATAc > 2:117618/1‑251 (MQ=255) aTAAGGGATCGCCATTAACGCATTGGTGAAAA‑TCACAATGCCGTCAGCAGATTGCGGCAGGCCAATGG‑TGTTGTTGAGCAGTAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGCGAGGATCAACATGCCGCTCATCTCCAGCGCCTGACCCGCCAGCATTTTCTGCCGCGCCCGAAGTTCGCGACTGCTCCATAGCAGCATCATGGTCAGCACTACGCACAATACACCTGCCGCCAGCGCAATAc > 1:113269/1‑251 (MQ=255) ggggATCCCCATTAACGCATTGGTGAAAA‑TCACAATGCCGTCAGCAGATTGCGGCAGGCCAATGG‑TGTTGTTGAGCAGTAAAAAGAAGCCGGTAGCCACCACAATCCCCGGCATGGCGAGGATCAACATGCCGCTCATCCCCAGCGCCTGACCCGCCAGCATTTTCTGCCGCGCCCGAAGTTCGCGACTGCTCCATAGCAGCATCATGGTCAGCACTACGCACAATACACCTGCCGCCAGCGCAATACGCa < 1:88349/250‑1 (MQ=255) cgcattaaacgcttgggtaaaaa‑TCACAATCCCTTAAGCAGATTGCGGCAGGCCAATGG‑TGTTGTTGAGCAGTAAAAAGAAGCCGGTAGCCACCAAAACCCCCGGCAGGGCGAGGATCAACATGCCGCTCATCTCCAGCGCCTGACCCGCCAGCATTTTCTGCCGCGCCCGAAGTTCGCGACTGCTCCATAGCAGCATCATGGTCAGCACTACGCACAATACACCTGCCGCCAGCGCAATACGCAACGAgg < 1:179583/232‑1 (MQ=255) cGCCATTAACGCATTGGTGAAAA‑TCACCATGCCGTCAGCAGATTGCGGCAGGCCAATGG‑TGTTGTTGAGCAGTAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGCGAGGCTCAACATGCCGCTCATCTCCAGCGCCTGACCCGCCAGCATTTTCTGCCGCGCCCGAAGTTCGCGACTGCTCCATAGCAGCATCATGGTCAGCACTACGCACAATACACCTGCCGCCAGCGCAATACGCAACGAgg > 2:30140/1‑251 (MQ=255) ttAACGCATTGGTGAAAA‑TCACAATGCCGTCAGCAGATTGCGGCAGGCCAATGG‑TGTTGTTGAGCAGTAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGCGAGGATCAACATGCCGCTCATCTCCAGCGCCTGACCCGCCAGCATTTTCTGCCGCGCCCGAAGTTCGCGACTGCTCCATAGCAGCATCATGGTCAGCACTACGCACAATACACCTGCCGCCAGCGCAATACGCAACGAGGTCcac > 2:36085/1‑251 (MQ=255) | CACCAATCGACAGCACGCATGCAAAGGCCAGCGCCTGCGCCAGTGGACGTTTCAGGGCGCGCAGCTCCACCACTTTTAAGCGTGACCAGCCTTCAATCCCCAGCGACTGACATAACATGCTGTAGCGGGCGGTGATATCGCGCATCGGGTTTTCCAGCACTTTCAGCGCATAAGGGATCGCCATTAACGCATTGGTGAAAA‑TCACAATGCCGTCAGCAGATTGTGGCAGGCCGATAG‑TGTTGTTGAGCAGTAAAAAGAAGCCGGTAGCCAGCACAATCCCCGGCATGGCGAGGATCAACATGCCGCTCATCTCCAGCACCTGACCCGCCAGCATTTTCTGCCGCGCCCGCAGTTCGCGACTGCTCCATAGCAGCATCATGGTCAGCACTACGCACAATACACCTGCCGCCAGCGCAATACGCAACGAGGTCCAC > NC_000913/73096‑73529 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |