Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,209,791	0	G	A	34.0%	39.2 / 49.3	54	noncoding (18/76 nt)	gltV	tRNA‑Glu
Reads supporting (aligned to +/- strand):  ref base G (8/27);  new base A (10/8);  total (19/35)
Fisher's exact test for biased strand distribution p-value = 3.07e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.19e-02
Rejected as consensus: Frequency below/above cutoff threshold.

ACACCGCCCGTCACACCATGGGAGTGGGTTGCAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGC‑CACTTGCTGGTTTGTGAGTGAAA‑GTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGG  >  NC_000913/4209542‑4210036                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                        acacCGCCCGTCACACCATGGGAGTGGGTTGCAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGc                                                                                                                                                                                                                                                        <  1:130955/251‑1 (MQ=31)  cacCGCCCGTCACACCATGGGAGTGGGTTGCAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCGTTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGcc                                                                                                                                                                                                                                                       <  2:76880/251‑1 (MQ=14)        ccGTCACCCCATGGGAGTGCGTTGCAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGACCCAGGac                                                                                                                                                                                                                                                 >  2:136412/1‑251 (MQ=14)                ccATGGGAGTGGGTTGCAAAAGAAGTAGGTAGCTGAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCt                                                                                                                                                                                                                                         <  2:195677/251‑1 (MQ=14)                 cATGGGAGTGGGTTGCAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGACCCAGGACACCGCCCtt                                                                                                                                                                                                                                        >  1:135831/1‑251 (MQ=14)                 cATGGGAGTGGGTTGCAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCACGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCtt                                                                                                                                                                                                                                        >  1:42774/1‑251 (MQ=14)                    gggAGTGGGTTGCAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTc                                                                                                                                                                                                                                      >  2:87549/1‑250 (MQ=31)                                 aaaaGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAgg                                                                                                                                                                                                                        <  2:118720/251‑1 (MQ=31)                                   aagaagTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCACGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGACCCAGGACACCGCCCTTTCACGGCGGTAACAgggg                                                                                                                                                                                                                      <  1:137491/251‑1 (MQ=14)                                          aggtagCTTAACCTTCGTGAGGGCGCTTACCACCTTGTGATTCATGCCTGGGGTGAAGTCGTAACAAGGTAAGCGTAGGAGAACCGGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTGCTGTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCACTTCGTCTAGAGGCCCAGGACACCGCCCTTTCTCTGATGTAACAGGGGTTCGaa                                                                                                                                                                                                                <  2:217171/250‑1 (MQ=11)                                            gtagCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATcc                                                                                                                                                                                                             <  2:42825/251‑1 (MQ=31)                                                 ttAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGACCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCt                                                                                                                                                                                                          >  2:177706/1‑249 (MQ=14)                                                  tAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGACCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTa                                                                                                                                                                                                         <  2:89271/249‑1 (MQ=14)                                                      cTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGACCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGAc                                                                                                                                                                                                   >  1:181254/1‑251 (MQ=14)                                                           ggAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGC‑CAc                                                                                                                                                                                             <  1:209530/251‑1 (MQ=31)                                                                        cACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGC‑CACTTGCTGGTTtgtg                                                                                                                                                                                <  1:146949/251‑1 (MQ=31)                                                                           tttGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCCAGGGGACGC‑CACTTGCTGGTTTgtgagt                                                                                                                                                                             >  1:106978/1‑251 (MQ=14)                                                                                    cATGACTGGGGTGAAGTCGGAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGC‑CACTTGCTGGTTTGTGAGTGAAA‑GTCAc                                                                                                                                                                   <  2:29671/251‑1 (MQ=14)                                                                                     aTGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGC‑CACTTGCTGGTTTGTGAGTGAAA‑GTCAcc                                                                                                                                                                  <  1:168492/251‑1 (MQ=31)                                                                                       gACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACATGGGTTCGAATCCCCTAGGGGACGC‑CACTTGCTGGTTTGTGAATGAAA‑GTCACCt                                                                                                                                                                 <  1:210477/250‑1 (MQ=14)                                                                                          ttttttGAAGTCGTACCAAGGTAACCGTAGGGGAACCTGCGGATTTCTCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGACCCTAAAGGCGTCTTGCGCAGACGACTGATACGTCCCCTTAGTCTAGAGCCCCCGGACACACCCCTTTCACGGCGGTAACCGGTGCTCGCATCACCCCGGGGACGCACACT‑GCTGGTTTgtgagcgcaagcctacttccc                                                                                                                                                              >  2:115302/6‑235 (MQ=2)                                                                                                  aGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTGTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGC‑CACTTGCTGGTTTGTGAGTGAAA‑GTCACCTGCCTTAATAtct                                                                                                                                                     <  2:204391/251‑1 (MQ=14)                                                                                                     cGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGC‑CACTTGCTGGTTTGTGAGTGAAA‑GTCACCTGCCTTAATATCTCaa                                                                                                                                                  <  2:148269/251‑1 (MQ=31)                                                                                                          cAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTATCAGGGGTTCGAATCCCCTAGGGGACGC‑CACTTGCTGGTTTGTGAGTGAAA‑GTCACCTGCCTTAATATCTCAAAACTc                                                                                                                                             <  1:219630/251‑1 (MQ=14)                                                                                                           aaGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGC‑CACTTGCTGGTTTGTGAGTGAAA‑GTCACCTGCCTTAATATCTCAAAACTCa                                                                                                                                            <  1:73970/251‑1 (MQ=31)                                                                                                            aGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAATAAGCGTTCTTGGCAGTGCTCCCACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGGCTAGAGGCCCAGGACAGCGCCCTTTCACGGCGGTAACAGTGGGTCGAATCCCCTATGGGACGC‑CACTTGCTGGTTTGTGAGTGAAA‑GTCACCTGCCGTAATATCTCAAAACTCAt                                                                                                                                           <  2:21821/251‑1 (MQ=11)                                                                                                                      aggtgAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCTCACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCCTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGC‑CACTTGCTGGTTTTTGAGTGAAA‑GTGACCTGCCGTAATATCGCAAATCTCATCATCGGGTg                                                                                                                                  <  2:20806/246‑1 (MQ=11)                                                                                                                      aGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCGTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGC‑CACTTGCTGGTTTGTGAGTGAAA‑GTCGCCTGCCTTAATATCTCAAAACTCATCTTCGGGTGa                                                                                                                                 <  1:127108/251‑1 (MQ=14)                                                                                                                       ggggAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGC‑CACTTGCTGGTTTGTGAGTGAAA‑GTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGAt                                                                                                                                <  2:134836/251‑1 (MQ=31)                                                                                                                            aCCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGACCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGC‑CACTTGCTGGTTTGTGAGTGAAA‑GTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTg                                                                                                                           <  2:15384/251‑1 (MQ=14)                                                                                                                                  ggTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGACCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGC‑CACTTGCTGGTTTGTGAGTGAAA‑GTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGatat                                                                                                                     <  1:223016/251‑1 (MQ=14)                                                                                                                                  ggTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGACCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGC‑CACTTGCTGGTTTGTGAGTGAAA‑GTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGatat                                                                                                                     <  1:177706/251‑1 (MQ=14)                                                                                                                                   gTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGC‑CACTTGCTGGTTTGTGAGTGAAA‑GTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATAtt                                                                                                                    <  1:188853/251‑1 (MQ=31)                                                                                                                                   gTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCGGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGC‑CACTTGCTGGTTTGTGAGTGAAA‑GTCACCTGCCTTAATAGCTCAAAATTCATCTTCGTGTGATGTTTGAGATAtt                                                                                                                    <  1:192310/251‑1 (MQ=9)                                                                                                                                    ttGGATCACCTCCTTACCTTACAGAAGCGTTCTTTGCAGTGCTAAAACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATAAGTCCCCTTCGTATAGAGACCCAGGACACCGCCCTTTCACGGCGGTAATAGGGGGTCGAATACCCTAGGGGAAGG‑CCCATGCTGGTTTGAGTGCGAAAAGTC‑CCTGCCTTAAAATCTCAAAAGTCATCTTCGGGTGATTTTTGAGatagtt                                                                                                                   >  1:195679/1‑248 (MQ=11)                                                                                                                                     tGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGCAGCAGACTGATACGTCCCCTTCGTCTAGAGACCCAggt                                                                                                                                                                                                                                                  >  2:156724/1‑124 (MQ=255)                                                                                                                                     tGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGACCCAGGa                                                                                                                                                                                                                                                  <  1:156724/125‑1 (MQ=18)                                                                                                                                               ccttaccttaAAGAAGCGTTCTTTGCAGTGCTCAAACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGACCCAGGACACCGCCCTTTCACGGCGGTCACAGGGGTTCGAATCCCCTAGGGGACGC‑CACTTGCTGGTTTTGGAGTGAAA‑GTCAACTGACATAAAATATTAAAACTTATATTACGGTGAGGTTTGAGATAttttttcttttaa                                                                                                         >  1:142577/1‑240 (MQ=11)                                                                                                                                                    ccttaAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGACCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGGTCGAATCCCCTAGGGGACGC‑CACTTGCTGGGTTGTGAGGGAAA‑GTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGGGATGTTTGAGATATTTTCTCTTTAAAAATCTg                                                                                                   >  2:47354/1‑251 (MQ=255)                                                                                                                                                     cttaAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGGTCCAATCCCCCAGGGGACGC‑CACTTGCTGGTTTGTGAGTGACA‑GTCACCTGCCTTAAACTCTCAAAACTCATCTTCGGGTGATGTTTTATATATTTGCTCTTTTAAAATCTgg                                                                                                  >  2:163472/1‑251 (MQ=11)                                                                                                                                                        aaaGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGACCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGC‑CACTTGCTGGTTTGTGAGTGAAA‑GTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATc                                                                                               <  2:6085/251‑1 (MQ=14)                                                                                                                                                        aaaGAAGCGTTCTATGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACCCCGCCCGTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGC‑CTCTTGCTGGTTTGTGAGTGAAA‑GTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAt                                                                                                <  1:132791/250‑1 (MQ=9)                                                                                                                                                          agaagCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGC‑CACTTGCTGGTTTGTGAGTGAAA‑GTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCaa                                                                                             <  1:62225/251‑1 (MQ=31)                                                                                                                                                            aagCGTTCTTTGCAGTGCTCACACAGATTCTCTGATAGAAAGTGAAACGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAAGGGACGC‑CCCTTTCTGGTTTGTGCGAGAAA‑GTCACCTGCCTTAATATCTCCAAACTCATCTTCGGGTGATGTTTTAGCTTTTTTCTCTTTTAAAACCTGGATCaaac                                                                                           >  2:115327/1‑249 (MQ=11)                                                                                                                                                              gCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGC‑CACTTGCTGGTTTGTGAGTGAAA‑GTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTg                                                                                         <  1:69707/251‑1 (MQ=31)                                                                                                                                                                  tCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGATCGAATCCCCTAGGGGACGC‑CCCCTGCTTGTTTTTGAGTGAAA‑GGCACCTGCCTTTATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTTCTCTTTAAAAATCTGGATCAAGCTGaaa                                                                                      >  2:46463/1‑250 (MQ=11)                                                                                                                                                                           tGCTCACACAGATTGTCTGATAGAAAGTGAAACGCAAGGCGTCTTGCGCAGCAGACTGATACGTCCCCTTCGTCTAGAGGCGCAGGACACCGCCCTTTCACGGCGGCAACAAGGGGTCGAATCCCATCGGGGACGC‑ACCTTGCTGGTTTGTCAGGGGAA‑GTCACCTTCCTTCACATCTCACAACCCATCTTCGGGGGATGGTTGAGATTTTTTGTATTTATAAATCTGGACCAAGCTgcgacattaaacac                                                                            >  2:80328/1‑238 (MQ=2)                                                                                                                                                                              tCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCACTTCGTCTAGAGACCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGC‑CACCTGCTTGGTTGTGAGGGGAA‑GTCACCCTCCTTAATATCTCCAAAATCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAACTGAAAATTGAAACACTg                                                                          >  1:87550/1‑250 (MQ=11)                                                                                                                                                                               cacacaGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGC‑CACTTGCTGGTTTGTGAGTGAAA‑GTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGa                                                                         <  1:67359/250‑1 (MQ=31)                                                                                                                                                                               cacacaGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGACCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGC‑CACTTGCTTGTTTGTGAGTGAAA‑GGCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCGCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGa                                                                         <  1:136412/250‑1 (MQ=9)                                                                                                                                                                                             gATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGC‑CACTTGCTGGTTTGTGAGTGAAA‑GTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAAGTGAAACACTGAACAACGAAAgttgt                                                           <  1:165102/250‑1 (MQ=14)                                                                                                                                                                                              aTAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGC‑CACTTGCTGGTTTGTGAGTGAAA‑GGCACCTGCCTTAATATCTCAAAACTCAGCTTCGGGTGATGTTTGAGATATTGGCTCTTTAAAAAGCTTGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTc                                                         <  1:213061/251‑1 (MQ=9)                                                                                                                                                                                                 gAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGACCCAGGACACCGCCCTTTCACGGCGGTAACCGGGGGTCGAATCCCCTCGGGGACCC‑CACTTGCTGGTTTGTGGGTGGAA‑GTCACCTGCCTTTATATCTCAAAACTCATCTTCGGGTGATGTTTGTGATATTTGCTCTTTAAAAATTTTGATTCAGCTGGAAATTGAAAAACTGaaaaataagaattgttcgtg                                                      >  2:27540/1‑233 (MQ=11)                                                                                                                                                                                                                                                     tAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGGTCGAATCCCCTAGGGGACGC‑CACTTGCTGGTTTGTGAGTGAAA‑GTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCggg  >  1:191435/1‑251 (MQ=14)                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                        ACACCGCCCGTCACACCATGGGAGTGGGTTGCAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGC‑CACTTGCTGGTTTGTGAGTGAAA‑GTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGG  >  NC_000913/4209542‑4210036

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑