New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3583428 =	NA (NA)	14 (0.640)	13/490	0.6	100%	noncoding (1/768 nt)	IS1	repeat region
	?	NC_000913	= 4542158	0 (0.000)					coding (122/597 nt)	fimE	regulator for fimA

TAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGC‑ATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGC  >  NC_000913/4541924‑4542399                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                  tAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTAGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGGTACGGGGCAACGGGAGCCAGAGATTATTGTCTTTTTCTGTTGGCATATCGGC‑ATGGGATGCGggtgatgctgccaact                                                                                                                                                                                                                                   <  1:135140‑M2/251‑17 (MQ=255)                 tgtgagGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCAATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCCGGGATTATTGTCTTATTCTGTTGGCATCACGGCCATGGGA‑GCGggggttgctgcccacttactgatttattgt                                                                                                                                                                                                                     <  2:127660‑M2/249‑31 (MQ=255)                                                                tttCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGC‑ATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggggtttttgaggtgctccagtggcttctgtttctattagctgt                                                                                                                                                                    <  1:92013‑M2/251‑80 (MQ=255)                                                                   ccTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGC‑ATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccc                                                                                                                                                                 >  1:147524‑M2/1‑169 (MQ=255)                                                                              tcattcaAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGC‑ATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcag                                                                                                                                                       >  2:186877‑M2/1‑158 (MQ=255)                                                                                    aaaTATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGC‑ATGGGATGCGggggatgctgccaacttactgatttagtgtatgatggtgttttttaggtgctccagtggcttctgtttctatccgctgtccctcctgttcagctactg                                                                                                                                                 <  1:166567‑M2/250‑99 (MQ=255)                                                                                                gTTAGGAGTACTACTATTGAGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGATACGGGGGAACGGGAGCCAGAGATTAGTGGATTATTCTGTTGGCCTATCGGC‑ATGGGGTGCGggggatgctgccaacttactgatttagtggatgatggtgtttttgaggtgctccagtggcttctggttctattcgctgtacctcctgttcagctcctgaaggggtgggg                                                                                                                                      <  1:119221‑M2/249‑110 (MQ=255)                                                                                                                 tgtgAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGC‑ATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcacc                                                                                                                    >  1:212824‑M2/1‑123 (MQ=255)                                                                                                                           cgtcgtTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGC‑ATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggggcgtaacggcaaaaacaccgccggacatcc                                                                                                         <  1:154115‑M2/251‑139 (MQ=255)                                                                                                                           cgtagtTATCTTACCGGTAAAGAAGTTCAGGACATGATGCAGGCGGATTGTTACGGGGCAAAGGGAGCCAGAGATTATTTTATTATTCTGGTGGCATATCGGC‑ATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggggctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggggcgtaacggcaaaagaaccgccggacatc                                                                                                          <  1:154121‑M2/250‑138 (MQ=255)                                                                                                                            gtcgtTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGC‑ATGGGGTGCGggtgatgctgccaacttactgatttagtgtatgatggggtttttgaggtgctccagtggcttttgtttctatcagctgtccctcctgttcagctactgacggggtggtgcggaacggcaaaagcaccgccggacatc                                                                                                          <  1:172215‑M2/249‑138 (MQ=255)                                                                                                                                                  agTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGC‑ATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgcc                                                                                  >  1:137219‑M2/1‑90 (MQ=255)                                                                                                                                                                                           gAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGC‑ATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctca                                          <  1:68056‑M2/250‑202 (MQ=255)                                                                                                                                                                                                                                   aTGGGATGCGggggatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaccagaaaatccttgatatggccatgaat  <  2:147370‑M2/251‑242 (MQ=255)                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                  TAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGC‑ATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGC  >  NC_000913/4541924‑4542399

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.