New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1978503 =	NA (NA)	27 (1.240)	27/490	0.1	100%	noncoding (768/768 nt)	IS1	repeat region
	?	NC_000913	4547065 =	0 (0.000)					coding (1970/2637 nt)	fimD	type I fimbriae usher protein

GCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTCAGCTATAGCGTGCAAACCGGCTATGCCGGGGGAGGCGATGGAAATAGCGGAAGTACAGGCTACGCCACGCTGAATTATCGCGGTGGTTACGGCAATGCCAATATCGGTTACAGCCATAGCGATGATATTAAGCAGCTCTATTACGGAGTCAGCGGTGGGGTACTGGCTCATGCCAATGGCGTAACGCTGGGGCAGCCGTTAAACGATACGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGA  >  NC_000913/4546834‑4547314                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                          atatggatgacggatggctggccgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGGGGAGGCGATGGAAATAGc                                                                                                                                                                                                                                        <  1:128253‑M2/20‑1 (MQ=255)     ggatgacggatggctggccgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGGGGAGGCGATGGAAATAGCGGa                                                                                                                                                                                                                                     >  2:221293‑M2/228‑250 (MQ=255)           cggatggctggccgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGGGGAGGCGATGGAAATAGCGGAAGTAc                                                                                                                                                                                                                                >  2:196561‑M2/222‑249 (MQ=255)                             atgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGGGGAGGCGATGGAAATAGCGGAAGTACAGGCTACGCCACGCTGAAt                                                                                                                                                                                                             <  1:149891‑M2/47‑1 (MQ=255)                                 atcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGGGGAGGCGATGGAAATAGCGGAAGTACAGGCTACGCCACGCTGAATTATcg                                                                                                                                                                                                        >  2:83376‑M2/200‑251 (MQ=255)                                   cccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGGGGAGGCGATGGAAATAGCGGAAGTACAGGCTACGCCACGCTGAATTATcgc                                                                                                                                                                                                       <  2:176148‑M2/53‑1 (MQ=255)                                          gaagggaaagctgcacgtaatcagcaagcgatatacgcagcgcattgagcggcataacctgaatctgaggcagcaactggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGGGGAGGCAATGGAAATAGCGGAAGTACAGGCTACGCCACGCTGACTTATCGCGGTGGtt                                                                                                                                                                                                >  1:148525‑M2/191‑250 (MQ=255)                                           aagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGGGGAGGCGATGGAAATAGCGGAAGTACAGGCTACGCCACGCTGAATTATCGCGGTGGTTAc                                                                                                                                                                                              <  1:143763‑M2/62‑1 (MQ=255)                                                aaagctgcacgtaatcagcatgcgatatccgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggcggggacggaagtcgctgccgttctcaaactcggtggagctgcctgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGGGGAGGCGATGGAAATAGCGGAAGTACAGGCTACGCTACGCTGAATTATCGCGGTGGTTACTGCa                                                                                                                                                                                          >  2:52372‑M2/185‑250 (MQ=255)                                                          gtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGGGGAGGCGATGGAAATAGCGGAAGTACAGGCTACGCCACGCTGAATTATCGCGGTGGTTACGGCAATGCCAATATc                                                                                                                                                                               <  2:78030‑M2/77‑1 (MQ=255)                                                               cagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGGGGAGGCGATGGAAATAGCGGAAGTACAGGCTACGCCACGCTGAATTATCGCGGTGGTTACGGCAATGCCAATATCGGtt                                                                                                                                                                           >  1:165121‑M2/170‑250 (MQ=255)                                                                  caagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGGGGAGGCGATGGAAATAGCGGAAGTACAGGCTACGCCACGCTGAATTATCGCGGTGGTTACGGCAATGCCAATATCGGTTAc                                                                                                                                                                         >  2:21653‑M2/167‑249 (MQ=255)                                                                        atatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgtacataaaacactatcaataagttggagtcattaccGGGGAGGCGATGGAAATAGCGGAAGTACAGGCTACGCCACGCTGAATTATCGCGGTGGTTACGGCAATGCCAATATCGGTTACAGCCAt                                                                                                                                                                   >  2:160770‑M2/161‑249 (MQ=255)                                                                                   gaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaagcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGGGGAGGCGATGGAAATAGCGGAAGTACAGGCTACGCCACGCTGAATTATCGCGGTGGTTACGGCAATGCCAATATCGGTTACAGCCATAGCGATGATATTa                                                                                                                                                      <  2:169548‑M2/102‑1 (MQ=255)                                                                                                                 agcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGGGGAGGCGATGGAAATAGCGGAAGTACAGGCTACGCCACGCTGAATTATCGCGGTGGTTACGGCAATGCCAATATCGGTTACAGCCATAGCGATGATATTAAGCAGCTCTATTACGGGGTCAGCGGTgggg                                                                                                                        <  2:16633‑M2/132‑1 (MQ=255)                                                                                                                   cacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGGGGAGGCGATGGAAATAGCGGAAGAACAGGCTACGCCACGCTGAATTATCGCGGTGGTTACGGCAATGCAAATATCGGTTACAGCCATAGCGATGATATTAAGCAGCGCTATTACGGAGTCAGCGGTGGGGt                                                                                                                       >  2:63205‑M2/118‑250 (MQ=255)                                                                                                                          cacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGGGGAGGCGATGGAAATAGCGGAAGTACAGGCTACGCCACGCTGAATTATCGCGGTGGTTACGGCAATGCCAATATCGGTTACAGCCATAGCGATGATATTAAGCAGCTCTATTACGGAGTCAGCGGTGGGGTACTGGCTc                                                                                                               <  2:173216‑M2/141‑1 (MQ=255)                                                                                                                                                                      ctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGGGGAGGCGATGGAAATAGCGGAAGTACAGGCTACGCCACGCTGAATTATCGCGGTGGTTACGGCAATGCCAATATCGGTTACAGCCATAGCGATGATATTAAGCAGCTCTATTACGGAGTCAGCGGTGGGGTACTGGCTCATGCCAATGGCGTAACGCTGGGGCAGCCGTTAAACGATACggtg                                                                   >  1:11801‑M2/67‑251 (MQ=255)                                                                                                                                                                                          gcattatctgaacataaaacactatcaataagttggagtcattaccGGGGAGGCGATGGAAATAGCGGAAGTACAGGCTACGCCACGCTGAATTATCGCGGTGGTTACGGCAATGCCAATATCGGTTACAGCCATAGCGATGATATTAAGCAGCTCTATTACGGAGTCAGCGGTGGGGTACTGGCTCATGCCAATGGCGTAACGCTGTGGCAGCCGTTAAACGATACGGTGGTGCTTGTTAAAGCGCCTgg                                               <  1:194765‑M2/205‑1 (MQ=255)                                                                                                                                                                                                    aacataaaacactatcaataagttggagtcattaccGGGGAGGCGATGGAAATAGCGGAAGTACAGGCTACGCCACGCTGAATTATCGCGGTGGTTACGGCAATGCCAATATCGGTTACAGCCATAGCGATGATATTAAGCAGCTCTATTACGGAGTCAGCGGTGGGGTACTGGCTCATGCCAATGGCGTAACGCTGGGGCAGCCGTTAAACGATACGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGAt                                     <  1:120142‑M2/215‑1 (MQ=255)                                                                                                                                                                                                       ataaaacactatcaataagttggagtcattaccGGGGAGGCGATGGAAATAGCGGAAGTACAGGCTACGCCACGCTGAATTATCGCGGTGGTTACGGCAATGCCAATATCGGTTACAGCCATAGCGATGATATTAAGCAGCTCTATTACGGAGTCAGCGGTGGGGTACTGGCTCATGCCAATGGCGTAACGCTGGGGCAGCCGTTAAACGATACGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGc                                   >  1:226608‑M2/34‑250 (MQ=255)                                                                                                                                                                                                           aacactatcaatcagttggagtcattaccGGGGAGGCGATGGAAATAGCGGAAGTACAGGCTACGCCACGCTGAATTATCGAGGTGGTTACGGCAATGCCAATATCGGTTACAGCCATAGCGATGATATTAAGCCGCTCTATTACGGAGTCAGCGGTGGGGTACTGGCTCATGCCAATGGCGTAAAGCTGGGGCAGCCGGTAAACGATACGGTGGGGCTTTTTAAAGCGCATGGCGCAAAAGATGCaaa                                >  2:212862‑M2/30‑249 (MQ=255)                                                                                                                                                                                                                 atcaataagttggattcagtaccGGGGAGGCGATGGAAATAGCGGAAGTACAGGCTACGCCACGCTGAATTATCGCGGTGGTTACGGCAATGCCAATATCGGTTACAGCCATAGCGATGATATTAAGCAGCTCTATTACGGAGTCAGCGGTGGGGTACTGGCTCATGCCAATGGCGTAACGCTGGGGCAGCCGTTAAACGATACGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGaa                         <  1:153941‑M2/227‑1 (MQ=255)                                                                                                                                                                                                                 atcaataagttggagtcattaccGGGGAGGCGATGGAAATAGCGGAAGTACAGGCTACGCCACGCTGAATTATCGCGGTGGTTACGGCAATGCCAATATCGGTTACAGCCATAGCGATGATATTAAGCAGCTCTATTACGGAGTCAGCGGTGGGGTACTGGCTCATGCCAATGGCGTAACGCTGGGGCAGCCGTTAAACGATACGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGaa                         >  1:71600‑M2/24‑250 (MQ=255)                                                                                                                                                                                                                  tcaataagttggagtcattaccGGGGAGGCGATGGAAATAGCGGAAGTACAGGCTACGCCACGCTGAATTATCGCGGTGGTTACGGCAATGCCAATATCGGTTACAGCCATAGCGATGATATTAAGCAGCTCTATTACGGAGTCAGCGGTGGGGTACTGGCTCATGCCAATGGCGTAACGCTGGGGCAGCCGTTAAACGATACGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGaaa                        >  1:189318‑M2/23‑250 (MQ=255)                                                                                                                                                                                                                                   ttaccGGGGAGGCGATGGAAATAGCGGAAGTACAGGCTACGCCACGCTGAATTATCGCGGTGGTTACGGCAATGCCAATATCGGTTACAGCCATAGCGATGATATTAAGCAGCTCTATTACGGAGTCAGCGGTGGGGTACTGGCTCATGCCAATGGCGTAACGCTGGGGCAGCCGTTAAACGATACGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGt       >  1:220251‑M2/6‑250 (MQ=255)                                                                                                                                                                                                                                       cGGGGAGGGGATGGAAATAGCGGAAGTCCAGGCTACTCCACTCTGAATTATCGCGGTGGTTACGGCAATGCCAATATCGGTTACAGCCATAGCGATGATATTAAGCAGCTCTATTACGGAGTCAGCGGTGGGGTACTGGCTCATGCCAATGGCGTAACGCTGGGGCAGCCGTTAAACGATACGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGa  <  2:8044‑M2/250‑1 (MQ=255)                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                          GCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTCAGCTATAGCGTGCAAACCGGCTATGCCGGGGGAGGCGATGGAAATAGCGGAAGTACAGGCTACGCCACGCTGAATTATCGCGGTGGTTACGGCAATGCCAATATCGGTTACAGCCATAGCGATGATATTAAGCAGCTCTATTACGGAGTCAGCGGTGGGGTACTGGCTCATGCCAATGGCGTAACGCTGGGGCAGCCGTTAAACGATACGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGA  >  NC_000913/4546834‑4547314

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.