| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,282,627 | C→T | Q922* (CAG→TAG) | narG → | nitrate reductase A subunit alpha |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,282,627 | 0 | C | T | 80.0% | 42.4 / ‑3.3 | 20 | Q922* (CAG→TAG) | narG | nitrate reductase A subunit alpha |
| Reads supporting (aligned to +/- strand): ref base C (4/0); new base T (4/12); total (8/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.44e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GTCGGCCATCTGGGTAAAGAAACCGACATCGTCACGCTGCCTATCCAGCATGACTCTGCCGCTGAACTGGCGCAGCCGCTGGATGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTATCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGT‑AAAGGGATTGCCTGGAACACCCAGAGCGAGATGGATCTGCTGCGTAAGCTCAACTACACCAAAGCGGAAGGTCCGGCGAAAGGCCAGCCGATGCTGAACACCGCAATTGATGCGGCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGAATTTACCGGTCGTGACCATACGCATCTGGCGCTGAATAAAGAAGACGAGAAGATCCGCTTCCGCGATATTCAGGCACAGC > NC_000913/1282378‑1282873 | gTCGGCCATCTGGGTAAAGAAACCGACATCGTCACGCTGCCTATCCAGCATGACTCTGCCGCTGAACTGGCGCAGCCGCTGGATGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTATCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGT‑AAAAGGATTGCCCGGGACAccc > 1:82960/1‑250 (MQ=255) ccagcTGGGTAAAGAAACCGACATCGTCCCTCTGCCTATCCAGCATGCCTCTGCCGCTGAACTGGCGCAGCCGCTGGATGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTATCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGT‑AAAGGGATTGCCTGGAACACCTAGAGCg < 2:8476/247‑1 (MQ=255) aCCGACATCGTCACGCTGCCTATCCAGCATGACTCTGCCGCTGAACTGGCGCAGCCGCTGGATGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTATCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGT‑AAAGGGATTGCCTGGAACACCTAGAGCGAGATGGATCTGCTGCg < 2:191852/251‑1 (MQ=255) aCATCGTCACGCTGCCTATCCAGCATGACTCTGCCGCTGAACTGGCGCAGCCGCTGGATGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTATCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGT‑AAAGGGATTGCCTGGAACACCTAGAGCGAGATGGATCTGCTGCGTAAg < 1:164300/251‑1 (MQ=255) tGCCGCTGAACTGGCGCAGCCGCTGGATGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTATCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGT‑AAAGGGATTGGCTGGAAAACCCAGAGGGAGGAGGAGCTGCTGCGTAAGCTCAACTACAACAAAACGGAAGGGCCGGCgg > 1:196346/1‑250 (MQ=255) gcAGCCGCTGGATGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTATCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGT‑AAAAGGAATGCCTGGGAAACCCAGAGCGAGGAGGGTCTGCTTCGGAAACTCAACTACACCAAAGCGGAAAGGCCGGCGAAAAGCCAGCCGacgc > 2:293965/1‑248 (MQ=255) aaaaaGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTAGCCGGCGACTTACGAACGCGTTACCACTAGCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGT‑AAAGGGATTGCCTGGAACACCTAGAGCGAGATGGATCTGCTGCGTAAGCTCAAGTACACCAAAGCGGAAGGTCCGGCGAAAGGCCAGCCGATGCTGAACACCGCAATTGATGCGGCagag < 2:82960/251‑1 (MQ=255) gCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTATCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGT‑AAAGGGATTGCCTGGAACACCTAGAGCGAGATGGATCTGCTGCGTAAGCTCAACTACACCAAAGCGGAAGGTCCGGCGAAAGGCCAGCCGATGCTGAACACCGCAATTGATGCGGCAGAGATGATCCTGac < 1:3908/250‑1 (MQ=255) gATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTATCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGT‑AAAGGGATTGCCTGGAACACCTAGAGCGAGATGGATCTGCTGCGTAAGCTCAACTACACCAAAGCGGAAGGTCCGGCGAAAGGCCAGCCGATGCTGAACACCGCAATTGATGCGGCAGAGATGATCCTGACACTGGCAc < 1:292043/251‑1 (MQ=255) aaCCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTATCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGT‑AAAGGGATTGCCTGGAACACCTAGAGCGAGATGGATCTGCTGCGTAAGCTCAACTACACCAAAGCGGAAGGTCCGGCGAAAGGCCAGCCGATGCTGAACACCGCAATTGATGCGGCAGAGATGATCCTGACACTGGCACCGGAAACCAACg < 1:206477/251‑1 (MQ=255) acaTTCTGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTATCGGCCCGCTGCTGGAGAAAATCGGTAATGGCGGT‑AAAGGGATTGACTGGGAAACCCAAAGCGAGATGGATCTGCTGCGTAAGCTCCACTACACCCAAAAGGGAGGGCCGGCGGAAGGCCAGCACCTGCTGAACACCCCACATGATGCGGGAGAGACGATACCGGCACCGGCCCCGGAAACCaaaaggccggtagcc > 2:47995/1‑238 (MQ=255) agagCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTATCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGT‑AAAGGGGTTGCCTGGGACACCTAGAGCGAGATGGATCTGCTTCGTAAGATCAACTACACCAAAAAGGAAGGGCCGGCGAAAGGCCAGCCGATGCTGAACACCCCAATTGATGCGGCAGAGATGATCCTGACCCTGGCAACGGAAACCAACGGTCAGGGAGCCGTGGAAGCCTggg > 1:269549/1‑251 (MQ=255) aCGAACGCTTTACCTCTATCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGT‑AAAGGGATTGCCTGGAACACCTAGAGCGAGATGGATCTGCTGCGTAAGCTCAACTACACCAAAGCGGAAGGTCCGGCGAAAGGCCAGCCGATGCTGAACACCGCAATTGATGCGGCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGAATTTACCGGt < 2:217778/251‑1 (MQ=255) cGAACGCTTTACCTCTATCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGT‑AAAGGGATTGCCTGGAACACCTAGAGCGAGATGGATCTGCTGCGTAAGCTCAACTACACCAAAGCGGAAGGTCCAGCGAAAGGCCAGCCGATGCTGAACACCGCAATTGATGCGGCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGAATTTACCGGTc < 2:212464/251‑1 (MQ=255) cGCTTTACCTCTATCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGT‑AAAGGGATTGCCTGGAACACCTAGAGCGAGATGGATCTGCTGCGTAAGCTCAACTACACCAAAGCGGAAGGTCCGGCGAAAGGCCAGCCGATGCTGAACACCGCAATTGATGCGGCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGAATTTACCGGTCGTGa < 1:293965/251‑1 (MQ=255) aCCTCTATCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGT‑AAAGGGATTGCCTGGAACACCTAGAGCGAGATGGATCTGCTGCGTAAGCTCAACTACACCAAAGCGGAAGGTCCGGCGAAAGGCCAGCCGATGCTGAACACCGCAATTGATGCGGCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGAATTTACCGGTCGTGACCATAc < 2:262013/251‑1 (MQ=255) gCTGATGGCGACAATCGGTAATGGCGGTCAAAGGAGTTGG‑TGGAAAACCCAGAGCGAGATGGATCTGCTGCGTAAGCTCAACTACACCAAAGCGGAAGGTCCGGCGAAAGGCCAACCGATGCCGAATACCGCAAGTGTTGCGGGAGAGATGATCCTGACACTTGCAACGGAAACCAAAAGTCAAGTAGCCGTGAAAGACTGGGGTGCCCTGAGATAATTTAACGGTCGGGAACATACgaattcggcggca > 1:226414/1‑238 (MQ=255) gTAATGGCGGT‑AAAGGGATTGCCTGGAACACCTAGAGCGAGATGGATCTGCTGCGTAAGCTCAACTACACCAAAGCGGAAGGTCCGGCGAAAGGCCAGCCGATGCTGAACACCGCAATTGATGCGGCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGAATGTACCGGTCGTGACCATACGCATCTGGCGCTGAATAAAGAAGACGagaag < 1:47995/251‑1 (MQ=255) ggCGGT‑AAAGGGATTGCCTGGAACACCTAGAGCGAGATGGATCTGCTGCGTAAGCTCAACTACACCAAAGCGGAAGGTCCGGCGAAAGGCCAGCCGATGCTGAACACCGCAATTGATGCGGCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGAATTTACCGGTCGTGACCATACGCATCTGGAGCTGAATAAAGAAGACGAGAAGATCCg > 2:262187/1‑251 (MQ=255) aaGGGATTGCCTGGAACACCTAGAGCGAGATGGATCTGCTGCGTAAGCTCAACTACACCAAAGCGGAAGGTCCGGCGAAAGGCCAGCCGATGCTGAACACCGCAATTGATGCGGCAGAGATGATCCTGAAACTGGCACCGGAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGAATTTACCGGTCGTGACCATACGCATCTGGCGCTGAATAAAGAAGACGAGAAGATCCGCTTCcgc > 2:83032/1‑251 (MQ=255) cacCTAGACCGAGCTGGATCTGCTGCGTCAGCTAAACTACCCCAAAGCGGAAGGTCAGGCGAAAGGCCAGCCGATGCTGAACACCGCAATTGATGCGGCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGAATTTACCGGTCGTGACCATACGCATCTGGCGCTGAATAAAGAAGACGAGAAGATCCGCTTCCGCGATATTCAGGCACAGc > 2:152564/1‑251 (MQ=255) | GTCGGCCATCTGGGTAAAGAAACCGACATCGTCACGCTGCCTATCCAGCATGACTCTGCCGCTGAACTGGCGCAGCCGCTGGATGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTATCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGT‑AAAGGGATTGCCTGGAACACCCAGAGCGAGATGGATCTGCTGCGTAAGCTCAACTACACCAAAGCGGAAGGTCCGGCGAAAGGCCAGCCGATGCTGAACACCGCAATTGATGCGGCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGAATTTACCGGTCGTGACCATACGCATCTGGCGCTGAATAAAGAAGACGAGAAGATCCGCTTCCGCGATATTCAGGCACAGC > NC_000913/1282378‑1282873 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |