| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,264,192 | C→T | E14K (GAA→AAA) | qorA ← | putative quinone oxidoreductase 1 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,264,192 | 0 | C | T | 96.3% | 90.3 / NA | 27 | E14K (GAA→AAA) | qorA | putative quinone oxidoreductase 1 |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (16/10); total (17/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.75e-01 | |||||||||||
ACACGATCGCCTGCCTTAATATGCTTTACACCACTGCCGACTTTACTCACGATGCCTGCTGCTTCGGTGCCTAATCCGCTGGGTAGCGATGGCGGCGGGTAAAGGCCGCTGCGGATATATGTGTCGATAAAATTGATGCCGATGGCTTTATTTTCGACCTGGATTTCATTCTCCGCCGGATCGGCAGGAGTGAACTCTACGGCTTG‑AAGTACTT‑CCGGGCCACCGTGCTTGTGAAATTCAATTCGTGTTGCCATGTGTCCTCCAGAACGTATCGTCAGGGTCTGCTTCATATGATAAAGTTTCGACCCATTCTTTATCTCGGTAACTCCATTCACTATGGCAGGAAATAAACCCTTCAACAAACAGCAGGCTGAACCCCGC‑GAACGCGATCCACAAGTTGCCGGGCTGAAAGTGCCTCCGCACTCGATCGAAGCGGAGCAGTCGGTGTTGGGCGGTTTA > NC_000913/4263978‑4264436 | acacGATCGCCTGCCTTAATATGCTTTACACCACTGCCGACTTTACTCACGATGCCTGCTGCTTCGGTGCCTAATCCGCTGGGTAGCGATGGCGGCGGGTAAAGGCCGCTGCGGATATATGTGTCGATAAAATTGATGCCGATGGCTTTATTTTCGACCTGGATTTCATTCTCCGCCGGATCGGCAGGAGTGAACTCTACGGCTTG‑AAGTACTT‑TCGGGCCACCGTGCTTGTGAAATTCAATTCGTGTTg < 1:254863/250‑1 (MQ=255) cctgcctTAATATGCTTTACACCACTGCCGACTTTACTCACGATGCCTGCTGCTTCGGTGCCTAATCCGCTGGGTAGCGATGGCGGCGGGTAAAGGCCGCTGCGGGTATATGTGTCGATAAAATTGATGCCGATGGCTTTATTTTCGACCTGGATTTCATTCTCCGCCGGATCGGCAGGAGTGAAATCTACGGCTTT‑AAGTAATT‑TTGGGCCAACGTGCTTGTGAAATTCAATTCGGGTTGCCATGTGtcc > 1:356022/1‑251 (MQ=255) tgcattACACCACTGCCGACTTTACTCACGATGCCTGCTGCTTCGGTGCCTAATCCGCTGGGTAGCGATGGCGGCGGGTAAAGGCCGCTGCGGATATATGTGTCGATAAAATTGATGCCGATGGGTTTATTTTCGACCTGGATTTCATTCTCCGCCGGATAGGGAGGAGTGAACTCTAACGCTTGTAAGAATTT‑TGGGGCCACCG‑GGTTGTGAAATTCAATTTGTGTTTTCATGTGTTCTCCCGAACGTAt > 1:204017/5‑251 (MQ=255) tACTCACGATGCCTGCTGCTTCGGTGCCTAATCCGCTGGGTAGCGATGGCGGCGGGTAAAGGCCGCTGCGGATATATGTGTCGATAAAATTGATGCCGATGGCTTTATTTTCGACCTGGATTTCATTCTCCGCCGGATCGGCAGGAGTGAACTCTACGGCTTG‑AAGTACTT‑TCGGGCCACCGTGCTTGTGAAATTCAATTCGTGTTGCCATGTGTCCTCCAGAACGTATCGTCAGGGTCTGCTTCATATg < 1:286689/250‑1 (MQ=255) gctgctGCGGTGCCTAATCCGCTGGGTAGCGATGGCGGCGGGTAAAGGCCTCTGCGGATATATGTGTCGATAAAATTGATGCCGATGGCTTTATTTTCGACCTTGATTTCATTCTCCGCCGGATCGGCAGGAGTGAACTCTACGGCTTG‑AAGTACTT‑TCGGGCCACCGTGCTTGTGAAATTCAATTCGTGTTGCCATGTGTCCTCCAGAACGGATCGTCAGGGTCTGCTTCATATGATAAAGTTTCGAcc < 1:179620/250‑1 (MQ=255) gctTCGGTGCCTAATCCGCTGGGTAGCGATGGCGGCGGGTAAAGGCCGCTGCGGATATATGTGTCGATAAAATTGATGCCGATGGCTTTATTTTCGACCTGGATTTCATTCTCCGCCGGATCGGCAGGAGTGAACTCTACGGCTTG‑AAGTACTT‑TCGGGCCACCGTGCTTGTGAAATTCAATTCGTGTTGCCATGTGTCCTCCAGAACGTATCGTCAGGGTCTGCTTCATATGATAAAGTTTCGACCCAt < 1:164484/250‑1 (MQ=255) gTGCCTAATCCGCTGGGTAGCGATGGCGGCGGGTAAAGGCCGCTGCGGATATATGTGTCGATAAAATTGATGCCGATGGCTTTTTTTTCGACCTGGATTTCATTCTCCGCCGGATCGGCAGGAGGGAAATCTACGGCTTT‑AAGGACTTTCTGGGCC‑CCCCGCTTGTGGAATTTAATTTGTGTTGCCCTGTGTCCTCCCGAACGTATCGTCCGGGGCTGGTTTATATTATAAAATTTTGAcccctttttttt > 2:196311/1‑242 (MQ=255) ggcggGTAAAGGCCGCTGCGGATATATGTGTCGCTAAAATTGATGCCGATGGCTTTATTTTCGACCTGGATTTCATTCTCCGCCGGATCGGCAGGAGTGAACTCTACGGCTTG‑GAGTACTT‑TCTGGCCACCGTGCTTGTGAAATTTCATTCGTGTTTCCCTTTGTCCTCCCGAACCTATAGGCAGGGGCTGCTTTATATGATCAAATTTCGACCCCTTTTTTTTCTCGGGTACTCCATTTACTATTGCAgg > 2:97803/1‑251 (MQ=255) gggTAAAGGCCGCTGCGGATATATGTGTCGATAAAATTGATGCCGATGGCTTTATTTTCGACCTGGATTTCATTCTCCGCCGGATCGGCAGGAGTGAACTCTACGGCTTG‑AAGTACTT‑TCGGGCCACCGTGCTTGTGAAATTCAATTCGTGTTGCCATGTGTCCTCCAGAACGTATCGTCAGGGTCTGCTTCATATGATAAAGTTTCGACCCATTCTTTATCTCGGTAACTCCATTCACTATGGCAGGaaa < 1:196311/251‑1 (MQ=255) aGGCCGCTGCGGATATATGTGTCGATAAAATTGATGCCGATGGCTTTATTTTCGACCTGGATTTCATTCTCCGCCGGATCGGCAGGAGTGAACTCTACGGCTTG‑AAGTACTT‑TCGGGCCACCGTGCTTGTGAAATTCAATTCGTGTTGCCATGTGTCCTCCAGAACGTATCGTCAGGGTCTGCTTCATATGATAAAGTTTCGACCCATTCTTTATCTCGGTAACTCCATTCACTATGGCAGGAAATAAAcc < 1:271122/251‑1 (MQ=255) ggCCGCTGCGGATATATGTGTCGATAAAATTGATGCCGATGGCTTTATTTTCGACCTGGATTTCATTCTCCGCCGGATCGGCAGGAGTGAACTCTACGGCTTG‑AAGTACTT‑TCGGGCCCCCGTGCTTGTGAAATTCAATTCGTGTTTCCATGTGTCCTCCAGAACGTATCGTCAGGGTCTGCTTCATCTGATAAAGTTTCGACCCCTTCTTTATCTCGGTAACTCCCTTCACTATGGCAGGGAATAAAccc > 2:140929/1‑251 (MQ=255) gATATATGTGTCGATAAAATTGATGCCGATGGCTTTATTTTCGACCTGGATTTCATTCTCCGCCGGATCGGCAGGAGTGAACTCTACGGCTTG‑AAGTACTT‑TCGGGCCACCGTGCTTGTGAAATTCAATTCGTGTTGCCATGTGTCCTCCAGAACGTATCGTCAGGGTCTGCTTCATATGATAAAGTTTCGACCCATTCTTTATCTCGTTAACTCCATTCACTATGGCAGGAAATAAACCCTTCaacaaa > 1:361411/1‑250 (MQ=255) aaaTTGATGCCGCTGGCTTTATTTTCGACCTGGATTTCATTCTCCGCCGGATCGGCAGGAGTGAACTCTACGGCTTG‑AAGTACTT‑TCGGGCCACCGTGCTTGTGAAATTCAATTCGTGTTGCCATGTGTCCTCCAGAACGTATCGTCAGGGTCTGCTTCATATGATAAAGTTTCGACCCATTCTTTATCTCGGTAACTCCATTCACTATGGCAGGAAATAAACCCTTCAACAAACAGCAGGCTGAACCCcg > 1:87816/1‑251 (MQ=255) aTTGATGCCGATGGCTGTATTTTCGACCTGGATTTCATTCTCCGCCGGATCGGCAGGAGTGAACTCTACGGCTTG‑AAGTACTT‑TCGGGCCACCGTGCTTGTGAAATTCAATTCGTGTTGCCATGTGTCCTCCAGAACGTATCGTCAGGGTCTGCTTCATATGATAAAGTGTCGACCCATTCTTTATCTCGGTAACTCCATTCACTATGGCAGGAAATAAACCCTTCAACAAACAGCAGGCTGAACCCcgc‑g < 2:58077/251‑1 (MQ=255) cGATGGCTTTATTTTCGACCTGGATTTCATTCTCCGCCGGATCGGCAGGAGTGAACTCTACGGCTTG‑AAGTACTT‑TCGGGCCACCGTGCTTGTGAAATTCAATTCGTGTTGCCATGTGTCCTCCAGAACGTATCGTCAGGGTCTGCTTCATATGATAAAGTTTCGACCCATTCTTTATCTCGGTAACTCCATTCACTATGGCAGGAAATAAACCCTTCAACAAACAGCAGGCTGAACCCCGC‑GAACGCGAt > 1:191683/1‑251 (MQ=255) tGGCTTTATTTTCGACCTGGATTTCATTCTCCGCCGGATCGGCAGGAGTGAACTCTACGGCTTG‑AAGTAATT‑TCGGGCCACCGTGCTTGTGAAAATCAATTCGTGTTGCCATGTGTCCTCCAGAACGAATCGTCAGGGTCTGCTTCATATGATAAAGTTTCGACCCATTCTTTATCTCGGTAACTCCATTCACTATGGCAGGAAATAAACCCTTCAACAAACAGCAGGCTGAACCCCGCAGAA‑GCGATcc > 1:59194/1‑250 (MQ=255) ggCTTTATTTTCGACCTGGATTTCATTCTCCGCCGGATCGGCAGGAGTGAACTCTACGGCTTG‑AAGTACTT‑TCGGGCCACCGTGCTTGTGAAATTCAATTCGTGTTGCCATGTGTCCTCCAGAACGTATCGTCAGGGTCTGCTTCATATGATAAAGTTTCGACCCATTCTTTATCTCGGTAACTCCATTCACTATGGCAGGAAATAAACCCTTCAACAAACAGCAGGCTGAACCCCGC‑GAACGCGATCcac > 2:51811/1‑251 (MQ=255) ggCTTTATTTTCGACCTGGATTTCATTCTCCACCGGATCGGCAGGAGTGAACTCTACGGCTTG‑AAGTACCT‑TCGGACCAACATGCTTGTAAAATTCAATTCGTGATGCCCTATGTCCTCCAGAACGTATCGTCAGGGTCTGCTTCATATGATAAAATTTCCACCCATTCTTTATCTCGGTAACTCCATTCACTATCGACGGCAATAAACCCTTCAACAAACAGCCAGCTCAACCCCCC‑GAACGCGATCcac > 1:26095/1‑251 (MQ=255) ttATTTTCGACCTGGATTTCATTCTCCGCCGGATCGGCAGGAGTGAACTCTACGGCTTG‑AAGTACTT‑TCGGGCCACCGTGCTTGTGAAATTCAATTCGTGTTGCCATGTGTCCTCCAGAACGTATCGTCAGGGTCTGCTTCATATGATAAAGTTTCGACCCATTCTTTATCTCGGTAACTCCATTCACTATGGCAGGAAATAAACCCTTCAACAAACAGCAGGCTGCACCCCGC‑GAACGCGATCCACAAGt > 1:117959/1‑251 (MQ=255) aCCTGGATTTCATTCTCCGCCGGATCGGCAGGAGTGAACTCTACGGCTTG‑AAGTACTT‑TCGGGCCACCGTGCTTGTGAAATTCAATTCGTGTTGCCATGTGTCCTCCAGAACGTATCGTCAGGGTCTGCTTCATATGATAAAGTTTCGACCCATTCTTTATCTCGGTAACTCCATTCACTATGGCAGGAAATAAACCCTTCAACAAACAGCAGGCTGAACCCCGC‑GAACGCGATCCACAAGTTGCCGGGCt > 1:23000/1‑251 (MQ=255) ccgccgGATCGGCAGGAGTGAACTCTACGGCTTG‑AAGTACTT‑TCGGGCCACCGTGCTTGTGAAATTCAATTCGTGTTGCCATGTGTCCTCCAGAACGTATCGTCAGGGTCTGCTTCATATGATAAAGTTTCGACCCATTCTTTATCTCGGTAACTCCATTCACTATGGCAGGAAATAAACCCTTCAACAAACAGCAGGCGGAACCCCGC‑GAACGCGATCCACAAGTTGCCGGGCTGAAAGTGCCTCCGCAc < 1:150577/251‑1 (MQ=255) gccgGATCGGCAGGAGTGAACTCTACGGCTTG‑AAGTACTT‑TCGGGCCACCGTGCTTGTGAAATTCAATTCGTGTTGCCATGTGTCCTCCAGAACGTATCGTCAGGGTCTGCTTCATATGATAAAGTTTCGACCCCTTCTTTATCTCGGTAACTCCATTCACTATGGCAGGAAATAAACCCTTCAACAAACAGCAGGCTGAACCCCGC‑GAACGTGATCCACAAGTTGCCGGGCTGAAAGTGCCCCCGCAccc > 2:288025/1‑249 (MQ=255) ctctACGGCTTG‑AAGTACTT‑TCGGGCCACCGTGCTTGTGAAATTCAATTCGTGTTGCCATGTGTCCTCCAGAACGTATCGTCAGGGTCTGCTTCATATGATAAAGTTTCGACCCATTCTTTATCTCGGTAACTCCATTCACTATGGCAGGAAATAAACCCTTCAACAAACAGCAGGCTGAACCCCGC‑GAACGCGATCCACAAGTTGCCGGGCTGAAAGTGCCTCCGCACTCGATCGAAGCGGAGCAGTCgg > 1:366687/1‑251 (MQ=255) aCGGCTTG‑AAGTACTT‑TCGGGCCACCGTGCTTGTGAAATTCAATTCGTGTTGCCATGTGTCCTCCAGAACGTATCGTCAGGGTCTGCTTCATATGa > 1:97401/1‑96 (MQ=255) aCGGCTTG‑AAGTACTT‑TCGGGCCACCGTGCTTGTGAAATTCAATTCGTGTTGCCATGTGTCCTCCAGAACGTATCGTCAGGGTCTGCTTCATATGa < 2:97401/96‑1 (MQ=255) ggcgtG‑AAGTACTT‑TCGGGCCACCGTGCTTGTGAAATTCAATTCGTGTTGCCATGTGTCCTCCAGAACGTATCGTCAGGGTCTGCTTCATATGATAAAGTTTCGACCCATTCTTTATCTCGGTAACTCCATTCACTATGGTAGGAAATAAACCCTGCAACAAACAGCAGGCTGAACCCCGC‑GAACGCGATCCACAAGTTGCCGGGCTGAAAGTGCCTCCGCACTCGATCGAAGCGGAGCAGTCGGTGTTgg < 2:233794/247‑1 (MQ=255) tACTT‑TCGGGCCACCGTGCTTGTGAAATTCAATTCGTGTTGCCATGCGTCCTACAGAACGTATCGTCAGGGTCTGCTTCCTATGATAAAGTTTCGACCCATTCTTTATCTCGGTAACTCCATTCACTATGGCAGGAAATAAACCCTTCAACAAACAGCAGGCTGAACCCCGC‑GAACGCGATCCACAAGTTGCCGGGCTGAAAGTGCCTCCGCACTCGATCGAAGCGGAGCAGTCGGCGGTGGGCGGTTTa > 1:40997/1‑250 (MQ=255) | ACACGATCGCCTGCCTTAATATGCTTTACACCACTGCCGACTTTACTCACGATGCCTGCTGCTTCGGTGCCTAATCCGCTGGGTAGCGATGGCGGCGGGTAAAGGCCGCTGCGGATATATGTGTCGATAAAATTGATGCCGATGGCTTTATTTTCGACCTGGATTTCATTCTCCGCCGGATCGGCAGGAGTGAACTCTACGGCTTG‑AAGTACTT‑CCGGGCCACCGTGCTTGTGAAATTCAATTCGTGTTGCCATGTGTCCTCCAGAACGTATCGTCAGGGTCTGCTTCATATGATAAAGTTTCGACCCATTCTTTATCTCGGTAACTCCATTCACTATGGCAGGAAATAAACCCTTCAACAAACAGCAGGCTGAACCCCGC‑GAACGCGATCCACAAGTTGCCGGGCTGAAAGTGCCTCCGCACTCGATCGAAGCGGAGCAGTCGGTGTTGGGCGGTTTA > NC_000913/4263978‑4264436 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |