New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1979270	NA (NA)	32 (0.850)	29/490	0.4	100%	noncoding (1/768 nt)	IS1	repeat region
	?	NC_000913	= 2172547	0 (0.000)					coding (327/1041 nt)	gatD	galactitol‑1‑phosphate 5‑dehydrogenase

GTCGATCGCCGTCACACTCTTTGCTCCCAGCGCGACAGCGCACTGAATGGCCAGCAGGCCAATGGTTCCGGCACCAATAATAATAACGTTTTTATTCTCACAACCTTGCGCTAAATGAAAAGCATGCAGACCAACGGTAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTGCGCACTGGGAATAAAACCCTTTCAGACACTCTGGACAAGTAAAACAGGGTAATAACGGCACACAGGCAACCGCATCGCCAGGGTGTAAATCATCAACACCGGATCCCACCGCATCAATATAGCCGCTAAATTCATGGCCTAACGTTATTGGATAATAATGTGCACCATTTTTAAATATCCTGGGTAAATCGGAACCACATAAGCCCGAGCTGGCAATTTTTACCCGCACCTC  >  NC_000913/2172298‑2172795                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                         ggcGATCGCCGTCACACTCTTTGCTCCCAGCGCGACAGCGCACTGAATGGCCAGCAGGCCAATGGTTCCGGCACCAATAATAATAACGTTTTTATTCTCACAACCTTGCGCTAAATGAAAAGCATGCAGACCAACGGTAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCa                                                                                                                                                                                                                                                          <  2:71585/248‑1 (MQ=255)        gCCGTCACACTCTTTGCTCCCAGCGCGACAGCGCACTGAATGGCCAGCAGGCCAATGGTTCCGGCACCAATAATAATAACGTTTTTATTCTCACAACCTTGCGCTAAATGAAAAGCATGCAGACCAACGGTAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAggtgatgc                                                                                                                                                                                                                                                  >  1:341889‑M2/1‑243 (MQ=255)               cacTCTTTGCTCCCAGCGCGACAGCGCACTGAATGGCCAGCAGGCCAATGGTGCCGGCACCAATAATAATAACGTTTTTATGCTCACAACCTTGCGCTAAATGAAAAGCATGCAGACCAACGGTAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACAGGTTTGCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCTggttatgctgccaac                                                                                                                                                                                                                                           >  2:32606‑M2/1‑236 (MQ=255)                                gagacAGCGCAATGAATGGCAAGCAGGCCAATGGGTCCGGCACCAATAATAAGAACGTTGTTATTCGCACAACCTGGCGCTAAATGAAAAGCATGCAGACAAACGGTAAGCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTGTTCGCTTAACGACAATATATTCAGCAAAACCACCATCACGCTGCGAGCCAggtgatgctggcaaagtacagatttagtgtag                                                                                                                                                                                                                          >  2:45702‑M2/3‑219 (MQ=255)                                         cACTGAATGGCCAGCAGGCCAATGGTTCCGGCACCAATAATAATAACGTTTTTATTCTCACAACCTTGCGCTAAATGAAAAGCATGCAGACCAACGGTAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAggtgatgctgccaacttactgatttagtgtatgatggtgtt                                                                                                                                                                                                                 <  2:297348‑M2/251‑42 (MQ=255)                                              atagaaacagaagccaatggttccgGCACCAATAATAATAACGTTTTTATTCTCACAACCTTGCGCTAAATGAAAAGCATGCAGACCAACGGTAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAggtgatgctgccaacttactgatttagtgtatgatggtgtttttg                                                                                                                                                                                                             <  2:65198‑M2/238‑46 (MQ=255)                                                 ggacagcaggccAATGGTTCCGGCACCAATAATACTAACGTTTTTATTCTCTCAACCTTGCGCTAAATGAAAAGCATGCAGACCAACGGTAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTGAACGACAATATATTCAGCAAATCCACCAGCACTCGGCGAGCCAggtgatgctgccaacttactgatttagtgtacgatggtgtttttgaggt                                                                                                                                                                                                         >  2:206836‑M2/4‑202 (MQ=255)                                                       cagGCCCATGGTTACGGCACCAATAATAATAACGTTTTTATTCTCACAACCTTGCGCTAAATGAAAAGCATGCAGACCAACGGAAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATAGATTCAGCAAATCCACCATCACGCCGCGAGCCAggtgatgctgccaacttactgatttagtgtatgatggggtttttgaggtgctcc                                                                                                                                                                                                    <  2:352968‑M2/250‑55 (MQ=255)                                                            cAAGGGTTCTGGCACCAATAATAATAACGTTTTTATTCTCACAACCTTGTGCTAAATGAAAAGCATGCAGACCAACGGTAATCGGCTCAATAAAAGCCTCAGCCACAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAtgggatgctgccaacttactgatttagtgtttgatggtgtttttgaggtgttccagtggc                                                                                                                                                                                              >  2:28630‑M2/1‑191 (MQ=255)                                                              aTGGTTCCGGCACCAATAATAATAACGTTTTTATTCTCTCACCCTTGCGCTAAATGAAAAGCATGCAGACCAACGGTAATCGGCTCAATAAAAGCCCCACCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAggtgatgctgccaacttactgatttagtgtatgatggtgtttgtgcggtgctccagtggctt                                                                                                                                                                                            >  2:294881‑M2/1‑189 (MQ=255)                                                                   tCCGGCATCAATAATAATAACGTTTTTTTTCACACAACCTTGCGCTAAATGAAAAGCATGCAGACCAACGGTAATCGGCTCAATAAAAGACCAATCCTCAATAGGCATATCCGTGCATAGAGCAAAGACATTTTTTCTCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGTGCCAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgt                                                                                                                                                                                        >  2:204479‑M2/1‑184 (MQ=255)                                                                    ccGGCACCAATACTAATAACGTTTTTATTCTCACAACCTTGCGCTAAATGAAAAGCATGCAGACCAACGGTAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgttt                                                                                                                                                                                      <  1:90832‑M2/251‑69 (MQ=255)                                                                        cACCAATAATAATAACGTTTTTATTCTCACAACCTTGCGCTAAATGAAAAGCATGCAGACCAACGGTAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctat                                                                                                                                                                                  >  1:65198‑M2/1‑179 (MQ=255)                                                                             ataataataACGTTTTTATTCTCACAACCTTGCGCTAAATGAAAAGCATGCAGACCAACGGTAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagct                                                                                                                                                                             <  1:357024‑M2/251‑78 (MQ=255)                                                                             ataagaattACGTTTTCATTCTCACAACCTTGCGCTAAATGAAAAGCATGCAGACCAGCGGTAATCGGCGAAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCACATCCACCATCACGCCGCTAGTCAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgcggtgctccagtggcttctgtttctatcagct                                                                                                                                                                             >  2:12972‑M2/1‑174 (MQ=255)                                                                               aataataaCGTTTTTATTCTCACAACCTTGCGCTAAATGAAAAGCATGCAGACCAACGGTAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgt                                                                                                                                                                           <  2:246942‑M2/251‑80 (MQ=255)                                                                                            ttATTCTCACAACCTTGCGCTCAATGAAAAGCCTGCAGCCCAACGGTAATCGGCTCAATAAAAGCCCCATACTCAATAGGCATATCCGTGGGAAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctataagctgtccctcctgttc                                                                                                                                                                <  2:277264‑M2/249‑91 (MQ=255)                                                                                            ttATTCTCACAACCTTGCGCTAAATGAAAAGCATGCAGACCAACGGTAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttca                                                                                                                                                               >  1:127853‑M2/1‑159 (MQ=255)                                                                                                   cacaACCTTGCGCTAAATGAAAAGCAGGCAGACCAACGGTAATCGGCTCAATAAAAGCCCCATCCACAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactg                                                                                                                                                        >  2:202029‑M2/1‑152 (MQ=255)                                                                                                         cctgcGCTAAATGCAAACCATGCAGACAGACGGTAATCGGCTCAATAAACGACCAATCCTCAATAGGCATATCCGTGGGTAGAGAAAAGACATTTTTTAGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGAGAGCCAggtgctgatgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggt                                                                                                                                                 <  2:352620‑M2/249‑106 (MQ=255)                                                                                                                 aaaTGAAAAGCATGCAGACCAACGGTAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgctcagctactgacggggtggtgcg                                                                                                                                           >  1:332723‑M2/1‑138 (MQ=255)                                                                                                                    tGAAAAGCATGCAGACCAACGGTAATAGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagcttctgacggggtggggcgtaacg                                                                                                                                      <  2:123100‑M2/251‑117 (MQ=255)                                                                                                                                aGACCAACGGTAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccg                                                                                                                          <  1:116220‑M2/251‑129 (MQ=255)                                                                                                                                               ggCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGTCATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctagcatctgtccctccttgtcagctacttacggggaggtgggtaacggaaaaagcaccgccggacatcagcgct                                                                                                           >  1:17301‑M2/1‑108 (MQ=255)                                                                                                                                                gCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgttcctatcagctgtccctcctgttcagctactgacggggtgttgcgtaacggcaaaagcaccgccggacatcagcgcta                                                                                                          >  2:180925‑M2/1‑107 (MQ=255)                                                                                                                                                     aTAAAAGCCCCATCCTCAATAGGCATATCCGAGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaacgccgtcaaacagcgctctctct                                                                                                     <  2:263466‑M2/251‑150 (MQ=255)                                                                                                                                                          aGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCCCCATCACGCCGCGAGCCAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctct                                                                                                >  2:190520‑M2/1‑97 (MQ=255)                                                                                                                                                                                                          ccgCTTAACGACAATATATTCAGCAAATCCTCCATCCCGCCGCGAGCCAgttgatgctgccaacttgcttatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacgggggggtgcgtaacggcaaaagcatcgccggacatcagcgctatctctgctcgcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaa                                                >  2:185481‑M2/2‑49 (MQ=255)                                                                                                                                                                                                                    aCAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgc                                      <  1:271360‑M2/251‑213 (MQ=255)                                                                                                                                                                                                                                             cACGCCGCGAGCCAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaccagaaaatcattgatatggccat             >  1:246942‑M2/1‑14 (MQ=255)                                                                                                                                                                                                                                                    cgAGCCAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaccagaaaatcattgatatggccatgaatggc      <  1:111853‑M2/251‑245 (MQ=255)                                                                                                                                                                                                                                                     gAGCCAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtacctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaccagaaaatcattgatatggccatgaatggcg     <  1:214387‑M2/251‑246 (MQ=255)                                                                                                                                                                                                                                                        ccAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaccagaaaatcattgatatggccatgaatggcgttg  >  2:256491‑M2/1‑3 (MQ=255)                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                         GTCGATCGCCGTCACACTCTTTGCTCCCAGCGCGACAGCGCACTGAATGGCCAGCAGGCCAATGGTTCCGGCACCAATAATAATAACGTTTTTATTCTCACAACCTTGCGCTAAATGAAAAGCATGCAGACCAACGGTAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTGCGCACTGGGAATAAAACCCTTTCAGACACTCTGGACAAGTAAAACAGGGTAATAACGGCACACAGGCAACCGCATCGCCAGGGTGTAAATCATCAACACCGGATCCCACCGCATCAATATAGCCGCTAAATTCATGGCCTAACGTTATTGGATAATAATGTGCACCATTTTTAAATATCCTGGGTAAATCGGAACCACATAAGCCCGAGCTGGCAATTTTTACCCGCACCTC  >  NC_000913/2172298‑2172795

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.