New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1978503 =	NA (NA)	37 (0.980)	34/490	0.2	100%	noncoding (768/768 nt)	IS1	repeat region
	?	NC_000913	2175525 =	0 (0.000)					coding (797/1263 nt)	gatZ	putative tagatose‑1,6‑bisphosphate aldolase 2 chaperone

GACAGGCTGTAACGAATATCCAGTAATGAATCGTTAAAACCCGTACGATAATATTTTTTCCAGTATTGCGGTTCGTCGAGCATCACTTCTTCAATTACCGCCAGGCAACCGCTGCGATTTTCAGGGGCGATAAGTTCCTGCTCAATTTGTGCCAGTGCAAATATCGCCTCGCGTAAAGCAAAGGTTAATGCGGGACCGACTTTCAATATTGCAAAGTGATCGCGGACTAATTCCCAATAAGCCGTCCGGGTCTGGTAATCGGTAGAATGTGCTTCATAAACCATTCGGGTGTTTTCTATCCATTGCGCCAGCGGCTGCGCTTCCTGCGGCTGATAATGGATAATATTGCTGTGATCAAATTCCACACCCGGCTGCACCACGATGGCAATCACACGTGTTAACGCCTCTGTCAGCCCACGGGCAATAAAGGCCTTTTGATGCGTACGTAAAGTATTGGCGGCATCTTCAACATGGGTGATGTGTACT  >  NC_000913/2175285‑2175770                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                      gacgtggtgatagggatgacggatggctggccgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCCGTCCGGGt                                                                                                                                                                                                                                             <  2:286111‑M2/11‑1 (MQ=255)    gtggtgatatggatgacggatggctggccgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCCGTCCGGGTCTg                                                                                                                                                                                                                                          >  1:47074‑M2/238‑251 (MQ=255)    gtggtgatatggatgacggatggctggccgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCCGTCCGGGTCTg                                                                                                                                                                                                                                          >  2:303161‑M2/238‑251 (MQ=255)                  gacggatggctggccgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCCGTCCGGGTCTGGTAATCGGTAGAAt                                                                                                                                                                                                                            <  1:117003‑M2/28‑1 (MQ=255)                      gatggctggccgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCCGTCCGGGTCTGGTAATCGGTAGAATGTGc                                                                                                                                                                                                                        >  1:197918‑M2/220‑251 (MQ=255)                            tggccgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCCGTCCGGGTCTGGTAATCGGTAGAATGTGCTTCAt                                                                                                                                                                                                                   >  1:46728‑M2/214‑250 (MQ=255)                                   tgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCCGTCCGGGTCTGGTAATCGGTAGAATGTGCTTCATAAACCAtt                                                                                                                                                                                                           >  1:303471‑M2/207‑251 (MQ=255)                                    gtagaaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgaagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCCGTCCGGGTCTGGTAATCGGTAGAATGTGCTTCATAAACCAt                                                                                                                                                                                                            <  1:216662‑M2/44‑1 (MQ=255)                                      atgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCCGTCCGGGTCTGGTAAGCGGTAGAATGTGCTTCATAAACCATTCgg                                                                                                                                                                                                        <  1:298608‑M2/48‑1 (MQ=255)                                                     agggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCCGTCCGGGTCTGGTAATCGGTAGAATGTGCTTCATAAACCATTCGGGTGTTTTCTATCCAt                                                                                                                                                                                         >  2:119462‑M2/189‑251 (MQ=255)                                                                        cagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCCGTCCGGGTCTGGTAATCGGTAGAATGTGCTTCATAAACCATTCGGGTGTTTTCTATCCATTGCGCCAGCGGCTGCGCt                                                                                                                                                                       <  2:366856‑M2/81‑1 (MQ=255)                                                                                       gcagcgaattgagcggcataacctgaatctgacgcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCCGTCCGGGTCTGGTAATCGGTAGAATGTGCTTCATAAACCATTAGGGTGTTTTCTATCCATTGCGCCCGCGGCTGCGCTTCCTGCGGCTGATAAt                                                                                                                                                       >  2:218978‑M2/155‑251 (MQ=255)                                                                                         agcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttcccaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCCGTCCGGGTCTGGTAATCGGTAGAATGTGCTTCATAAACCATTCGGGTGTTTTCTATCCATGGCGCCAGCGGCTGCGCTTCCTGCGGCTGATAATgg                                                                                                                                                     <  2:307387‑M2/99‑1 (MQ=255)                                                                                          gcgaattgagcggcataacctgaatctgaggcagcacctggcacggctggtacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcagtatctgaacatagaacactatcaataagttggagtcattaccGCCGTCCGGGTCTGGTAATCGGTAGAATGTGCTTCATAAACCTTTCGGGTGGTTTCTATCCATGGCGCCAGCGGCTGCGCTTCCTGCGGCTGATAATGGa                                                                                                                                                    <  2:169182‑M2/100‑1 (MQ=255)                                                                                          gcgaattgagcggcataacctgaatctaaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagtgggagtcattaccGCCGTCCGGGTCTGGTAATCGGTAGAATGTGCTTCATAAACCATTCGGGTGTTTTCGATCCATTGCGCCAGCGGCTGCGCTTCCTTCGGCTGATAATGGa                                                                                                                                                    <  2:238493‑M2/100‑1 (MQ=255)                                                                                                tgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCCGTCCGGGTCTGGTAATCGGTAGAATGTGCTTCATAAACCATTCGGGTGTTTTCTATCCATTGCGCCAGCGGCTGCGCTTCCTGCGGCTGATAATGGATAatat                                                                                                                                              >  1:298166‑M2/146‑251 (MQ=255)                                                                                                 gagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCCGTCCGGGTCTGGTAATCGGTAGAATGTGCTTCATAAACCATTCGGGTGTTTTCTATCCATTGCGCCAGCGGCTGCGCTTCCTGCGGCTGATAATGGATAatat                                                                                                                                              <  1:121734‑M2/106‑1 (MQ=255)                                                                                                         taacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCCGTCCGGGTCTGGTAATCGGTAGAATGTGCTTCATAAACCATTCGGGTGTTTTCTATCCATTGCGCCAGCAGCTGCGCTTCCTGCGGCTGATAATGGATAATATTGCTGTGAt                                                                                                                                     >  1:156591‑M2/137‑251 (MQ=255)                                                                                                                                   cacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCCGTCCGGGTCTGGTAATCGGTAGAATGTGCTTCATAAACCATTCGGGTGTTTTCTATCCATTGCGCCAGCGGCTGCGCTTCCTGCGGCTGATAATGGATAATATTGCTGTGATCAAATTCCACACCCGGCTGCACCACg                                                                                                           >  1:323436‑M2/111‑251 (MQ=255)                                                                                                                                   cacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCCGTCCGGGTCTGGTAATCGGTAGAATGTGCTTCATAAACCATTCGGGTGTTTTCTATCCATTGCGCCAGCGGCTGCGCTTCCTGCGGCTGATAATGGATAATATTGCTGTGATCAAATTCCACACCCGGCTGCACCACg                                                                                                           <  2:32248‑M2/141‑1 (MQ=255)                                                                                                                                                         gtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCCGTCCGGGTCTGGTAATCGGTAGAATGTGCTTCATAAACCATTCGGGTGTTTTCTATCCATTGCGCCAGCGGCTGCGCTTCCTGCGGCTGATAATGGATAATATTGCTGTGATCAAATTCCACACCCGGCTGCACCACGATGGCAATCACACGTGTTAAc                                                                                      <  2:323436‑M2/162‑1 (MQ=255)                                                                                                                                                                              gctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCCGTCCGGGTCTGGTAATCGGTAGAATGTGCTTCATAAACCATTCGGGTGTTTTCTATCCATTGCGCCAGCGGCTGCGCTTCCTGCGGCTGATAATGGATAATATTGCTGTGATCAAATTCCACACCCGGCTGCACCACGATGGCAATCACACGTGTTAACGCCTCTGTCAGCCCACGGGCa                                                                 >  1:90092‑M2/68‑250 (MQ=255)                                                                                                                                                                                  catgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGCCGTCCGGGTCTGGTAATCGGTAGAATGTGCTTCATAAACCATTCGGGTGTTTTCTATCCATTGCGCCAGCGGCTGCGCTTCCTGCGGCTGATAATGGATAATATTGCTGTGATCAAATTCCACACCCGGCTGCACCACGATGGCAATCACACGTGTTAACGCCTCTGTCAGCCCACGGGCAATaa                                                             >  1:43315‑M2/64‑250 (MQ=255)                                                                                                                                                                                                   gcattatctgaacataaaacactatcaataagttggagtcattaccGCCGTCCGGGTCTGGTAATCGGTAGAATGTGCTTCATAAACCATTCGGGTGTTTTCTATCCATTGCGCCAGCGGCTGCGCTTCCTGCGGCTGATAATGGATAATATTGCTGTGATCAAATTCCACACCCGGCTGCACCACGATGGCAATCACACGTGTTAACGCCTCTGTCAGCCCACGGGCAATAAAGGCCTTTTGATGcgtac                                           <  2:35752‑M2/205‑1 (MQ=255)                                                                                                                                                                                                     attatctgaacataaaacactatcaataagttggagtcattaccGCCGTCCGGGTCTGGTAATCGGTAGAATGTGCTTCATAAACAATTCGGGTGTTTTCTATCCATTGCGCCAGCGGCTGCGCTTCCTGCGGCTGATAATGGATAATATTGCTGTGATCAAATTCCACACCCGGCTGCACCACGATGGCAATCACACGTGTTAACGCCTCTGTCAGCCCACGGGCAATAAAGGCCTTTTGATGcgtacgt                                         >  1:209510‑M2/45‑251 (MQ=255)                                                                                                                                                                                                           tgaacataaaacactatcaataagttggagtcattaccGCCGTCCGGGTCTGGTAATCGGTAGAATGTGCTTCATAAACCATTCGGGTGTTTTCTATCCATTGCGCCAGCGGCTGCGCTTCCTGCGGCTGATAATGGATAATATTGCTGTGATCAAATTCCACACCCGGCTGCACCACGATGGCAATCACACGTGTTAACGCCTCTGTCAGCCCACGGGCAATAAAGGCCTTTTGATGCGTACGTAAAGt                                    >  2:335943‑M2/39‑250 (MQ=255)                                                                                                                                                                                                              acataaaacactatcaataagttggagtcattaccGCCGTCCGTGTCTGGTAATCGGTAGAATGTGCTGCATAAACCATTCGGGTGTTTTCTATCCATTGCGCCAGCGGCTGCGCTTCCTGCGGCTGATAATGGATAATATTGCTGTGATCAAATTCCACACCCGGCTGCACCACGATGGCAATCACACGTGTTAACGCCACTGTCAGCCCACGGGCAATAAAGGCCGGTTGATGCGTACGTAAAGTATTg                                <  2:225411‑M2/216‑1 (MQ=255)                                                                                                                                                                                                                 aaaaacactatcaataagttggagtcattaccGCCGTCCGGGTCTGGTAATCGGTAGAATGTGCTTCATAAACCATTCGGGTGTTTTCTATCCATTGCGCCAGCGGCTGCGCTTCCTGCGGCTGATAATGGATAATATTGCTGTGATCAAATTCCACACCCGGCTGCACCACGATGGCAATCACACGTGTTAACGCCTCTGTCAGCCCACGGGCAATAAAGGCCTTTTGATGCGTACGTAAAGTATTggcg                             <  2:76921‑M2/219‑1 (MQ=255)                                                                                                                                                                                                                  aaaacactatcaatcagttggagtcattaccGCAGTCCGGGTCTGGTAATCGGTAGAATGTGCTTCATAAACCATTCGGGTGTTTTCTATCCATTGCGCCAGCGGCTGCGCTTCCTGCGGCTGATACTGGATAATATTGCTGTGATCCAATTCCACACCCGGCTGCACCACGATGGCAATCACACGTGTTAACGCCTCTGTCAGCCCACGGGCAATAAAGGCCTTTTGCTGCGTACGTAAAGTATTggcgg                            >  2:353288‑M2/32‑251 (MQ=255)                                                                                                                                                                                                                  aaaacactatcaataagttggagtcattaccGCCGTCCGAGTCTGGTAATCGGTAGAATTTGCTTCATAAACCATTCGGGTGTTTTCTATCCATTGCGCCAGCGGCTGCGCTTCCTGCGGCTGATAATGGATAATATTGCTGTGATCAAATTCCACACCCGGCTGCACCACGATGGCAATCACACGTGTTAACGCCTTTGTCAGCCCGCGGGCAATAAAGGCCTTTTGATGCGTACGTAAAGTATTggcgg                            <  2:214387‑M2/220‑1 (MQ=255)                                                                                                                                                                                                                  aaaacactatcaataagttggagtaattaccGCCGTCCGGGTCTGGTAATCGGTAGAATGTGCTTCATAAACCATTCGGGTGTTTTCTATCCATTGCGCCAGCGGCTGCGCTTCCTGCGGCTGATAATGGATAATATTGCTGTGATCAAATTCCACACCCGGCTGCACCACGATGACAATCACACGTGTTAACGCCTCTGTCAGCCCACGGGCAATAAAGGCCTTTTGATGCGTACGTAAAGTATTgccgg                            >  2:353293‑M2/32‑251 (MQ=255)                                                                                                                                                                                                                       actatcaataagttggagtcattaccGCCGTCCGGGTCTGGTAATCGGTAGAATGTGCTTCATAAACCATTCGGGTGTTTTCTATCCATTGCGCCAGCGGCTGCGCTTCCTGCGGCTGATAATGGATAATAGTGCTGTGATCAAATTCCACACCCGGCTGCACCACGATGGCAATCACACGTGTTAACGCCTCTGTCAGCCCACGGGCAATAAAGGCCTTTTGATGCGTACGTAAAGTATTGGCGGCATCt                       <  1:24856‑M2/225‑1 (MQ=255)                                                                                                                                                                                                                            caataagttggagtcattaccGCCGTCCGGGTCTGGTAATCGGTAGAATGTGCTTCATAAACCATTCGGGTGTTTTCTATCCATTGCGCCAGCGGCTGCGCTTCCTGCGGCTGATAATGGATAATATTGCTGTGATCAAATTCCACACCCGGCTGCACCACGATGGCAATCACACGTGTTAACGCCTCTGTCAGCCCACGGGCAATAAAGGCCTTTTGATGCGTACGTAAAGTATTGGCGGCATCTTCAAc                  >  1:23214‑M2/22‑251 (MQ=255)                                                                                                                                                                                                                            caataagttggagtcattaccGCCGTCCGGGTCTGGTAATCGGTAGAATGTGCTTCATAAACCATTCGGGTGTTTTCTATCCATTGCGCCAGCGGCTGCGCTTCCTGCGGCTGATAATGGATAATATTGCTGTGATCAAATTCCACACCCGGCTGCACCACGATGGCAATCACACGTGTTAACGCCTCTGTCAGCCCACGGGCAATAAAGGCCTTTTGATGCGTACGTAAAGTATTGGCGGCATCTTCAAc                  <  1:132655‑M2/230‑1 (MQ=255)                                                                                                                                                                                                                              ataagttggagtcattaccGCCGTCCGGGTCTTGTACTCGGTAGAATGTGCTTCATAACCCATTCGGGTGTTTTCTATCCATTGCGCCAGCGGCTGCGCTTCTTGCGGCTGATAATGTCTAATATTGCTGTGATCAAATTCCACACCCGGCTGCACCCCGATGGCAATCACACGTGTTACCTCCTCTGTCAGCCCACGGGCCATAAAGGCCTTTTGATGAGCACGTAAAGTATTGGCGGCTTCTTCCACAt                >  2:46121‑M2/20‑251 (MQ=255)                                                                                                                                                                                                                                     ggagtcattaccGCCGTCCGGGTCTGGTAATCGGTAGAATGTGCTTCATAAACCATTCGGGTGTTTTCTATCCATTGCGCCAGCGGCTGCGCTTCCTGCGGCTGATAATGGATAATATTGCTGTGATCAAATTCCACACCCGGCTGCACCACGATGGCAATCACACGTGTTAACGCCTCTGTCCGCCCACGGGCAATAAAGGCCTTTTGCTGCGTACGTAAAGTATTGGCGGCATCTTCAACATGGGTGAt         >  2:274645‑M2/13‑251 (MQ=255)                                                                                                                                                                                                                                             taccGCCGTCCGGGTCTGGTAATCGGTAGAATGTGCTTCATAAACCATTCGGGTGTTTTCTATCCATTGCGCCAGCGGCTGCGCTTCCTGCGGCTGATAATGGATAATATTGCTGTGATCAAATTCCACACCCGGCTGCACCACGATGGCAATCACACGTGTTAACGCCTCTGTCAGCCCACGGGCAATAAAGGCCTTTTGATGCGTACGTAAAGTATTGGCGGCATCTTCAACATGGGTGATGTGTact  <  2:303471‑M2/246‑1 (MQ=255)                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                      GACAGGCTGTAACGAATATCCAGTAATGAATCGTTAAAACCCGTACGATAATATTTTTTCCAGTATTGCGGTTCGTCGAGCATCACTTCTTCAATTACCGCCAGGCAACCGCTGCGATTTTCAGGGGCGATAAGTTCCTGCTCAATTTGTGCCAGTGCAAATATCGCCTCGCGTAAAGCAAAGGTTAATGCGGGACCGACTTTCAATATTGCAAAGTGATCGCGGACTAATTCCCAATAAGCCGTCCGGGTCTGGTAATCGGTAGAATGTGCTTCATAAACCATTCGGGTGTTTTCTATCCATTGCGCCAGCGGCTGCGCTTCCTGCGGCTGATAATGGATAATATTGCTGTGATCAAATTCCACACCCGGCTGCACCACGATGGCAATCACACGTGTTAACGCCTCTGTCAGCCCACGGGCAATAAAGGCCTTTTGATGCGTACGTAAAGTATTGGCGGCATCTTCAACATGGGTGATGTGTACT  >  NC_000913/2175285‑2175770

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.