| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,596,579 | C→A | A197E (GCG→GAG) | lgoD → | L‑galactonate oxidoreductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,596,579 | 0 | C | A | 95.0% | 54.4 / ‑6.6 | 20 | A197E (GCG→GAG) | lgoD | L‑galactonate oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base A (7/12); minor base G (1/0); total (8/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TAGTGAGTATTTGAGCGTGCCGGTGGCGAACATTTTGCCCGCAGACGGTATTGACCCGCAGGCGGCAGCATTGATTGAACCTTTCGCTATTAGCGCTCATGCGGTGCGTCGCGCAGCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTCGGGGCGGGGCCAATCGGTCTGGGCGCGGCGGCAATCGCTAAAGCCGATGGCGCACAGGTGGTGGTGGCGGATACCAGTCCGGCGCGCCGTGAACATGTGGCAACGCGTCTGGAATTACCTTTACTGGACCCGTCAGCCGAAGATTTTGACGCGCAGCTACGGGCGCAGTTTGGTGGTTCGCTGGCGCAGAAAGTGATCGACGCGACAGGTAATCAACATGCGATGAATAACACCGTGAATTTGATTCGTCACGGCGGCACGGTGGTATTTGTCGGCCTGTTTAAAGGTGAGTTGCAGTTCTCCG > NC_000913/4596349‑4596800 | tAGTGAGTATTTGAGCGTGCCGGTGGCGAACATTTTGCCCGCAGACGGTATTGACCCGCAGGCGGCAGCATTGATTGAACCTTTCGCTATTAGCGCTCATGCGGTGCGTCGCGCAGCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTCGGGGCGGGGCCAATCGGTCTGGGCGCGGCGGCAATCGCTAAAGCCGATGGCGCACAGGTGGTGGTGGCGGATACCAGTCCGGAGCGCCGTGAACATGTGGCa < 2:90090/250‑1 (MQ=255) tttGAGCGTGCCGGTGGCGAACATTTTGCCCGCAGACGGTATTGACCCGCAGGCGGCAGCATTGATTGAACCTTTCGCTATTAGCGCTCATGCGGTGCGTCGCGCAGCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTCGGGGCGGGGCCCATCGGTCTGGGCGCGGCGGCAATCGCTAAAGCCGATGGCGCACAGGGGGGGGGGGCGGATACCAGGCCGGAGCGCCGTGCACATGGGGCAACGCGTCTgg > 1:220465/1‑251 (MQ=255) gAACATTTTGCCCGAAGACGGTATTGACCCGCAGGCGGCAGCATTGATTGAACCTTTCGCTATTAGCGCTCATGCGGTGCGTCGCGCAGCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTCGGGGCGGGGCCAATCGGTCTGGGCGCGGCGGCAATCGCTAAAGCCGATGGCGCACCGGGGGGGGGGGCGGATACCAGTCCGGAGCGCCGTGAACAAGTGGGAACGCGTCTTGAATTAACCTTACTGGAcc > 1:178199/1‑251 (MQ=255) aaCATTTTGCCCGCAGACGGTATTGACCCGCAGGCGGCAGCATTGATTGAACCTTTCGCTATTAGCGCTCATGCGGTGCGTCGCGCAGCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTCGGGGCGGGGCCAATCGGACTGGGCGCGGCGGCAATCGACAAAGCCGATGGCGGACAGGGGGGGGGGGGGGGTACCAGTCCGGAGCGCCGGGAACCTGTGGCAACGCGTCTGGAATTACCTTTACTGGAccc > 1:79080/1‑251 (MQ=255) gCCCGCAGACGGTATTGACCCGCAGGCGGCAGCATTGATTGAACCTTTCGCTATTAGCGCTCATGCGGTGCGTCGCGCAGCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTCGGGGCGGGGCCAAACGGTCTGGGCGCGGCGGCAATCGCTAAAGCCCAGGGCGCACACGGGGGGGTGGCGGGTAACCGGCCCGAGGGCCGGGGACCTGTGGCAACGCGTCTGGGATTACCCTTTCTGGGCCCGCCAGccc > 2:67106/1‑250 (MQ=255) gACGGTATTGACCCGCAGGCGGCAGCATTGATTGAACCTTTCGCTATTAGCGCTCATGCGGTGCGTCGCGCAGCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTCGGGGCGGGGCCAATCGGTCTGGGCGCGGCGGCAATCGCTAAAGCCGATGGCGCACAGGTGGTGGTGGCGGATACCAGTCCGGAGCGCCGTGAACATGTGGCAACGCGTCTGGAATTACCTTTACTGGACCCGTCAGCCGAAGAttt < 1:158096/251‑1 (MQ=255) cAGGCGGCAGCATTGATTGAACCTTTCGCTATTAGCGCTCATGCGGTGCGTCGCGCAGCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTCGGGGCGGGGCCAATCGGTCTGGGCGCGGCGGCAAACGCTAAAGCCGATGGCGCACAGGGGGGGGTGGCGGGGACCAGGCCGGGGCGCCGGGGACATGGGGCAACGCGTCTGGAATTACCTTTTCTGGACCCCGCAGCCGAAGATTTTGGCGCGCAGCTACg > 2:194800/1‑251 (MQ=255) tgaACCTTTCGCTATTAGCGCTCATGCGGTGCGTCGCGCAGCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTCGGGGCGGGGCCAATCGGTCTGGGCGCGGCGGCAATCGCTAAAGCCGATGGCGCACAGGTGGTGGTGGCGGATACCAGTCCGGAGCGCCGTGAACATGTGGCAACGCGTCTGGAATTACCTTTACTGGACCCGTCAGCCGAAGATTTTGACGCGCAGCTACGGGCGCAGTTTggtggt < 1:12417/250‑1 (MQ=255) gaACCTTTCGCTATTAGCGCTCATGCGGTGCGTCGCGCAGCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTCGGGGCGGGGCCAATCGGTCTGGGCGCGGCGGCAATCGCTAAAGCCGATGGCGCACAGGTGGTGGTGGCGGATACCAGTCCGGAGCGCCGTGAACATGTGGCAACGCGTCTGGAATTACCTTTACTGGACCCGTCAGCCGAAGATTTTGACGCGCAGCTACGGGCGCAGTTTGGTGGtt < 2:154973/250‑1 (MQ=255) aTTAGCGCTCATGCGGTGCGTCGCGCAGCCATTGCTCCCGGCGAGCAGGAGCTGGTGGTCGGGGCGGCGCCAATCCGTCTGGGCGCGGCGGCGATTGCTACAGCCGGGGGCGCGCAGGTGGGGGTGGCGGATACCAGTCCGGAGCGCCGTGAACATGTGGGAACGCGGCTGGAATTACCTTTACTGGACCCGTCCGCCCAAGATTTTGACGCCCAGCCAACGGCGCAGGTtggggggttgccggcgccgg > 2:101768/1‑233 (MQ=255) tAGCGCTCAGGCGGTGCGTCGCGCAGCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTCGGGGCGGGGCCAATCGGTCTGGGCGCGGCGGCAATCGCTAAAGCCGATGGCGCACAGGTGGTGGTGGCGGATACCAGTCCGGAGCGCCGTGAACATGTGGCAACGCGTCTGGAATTACCTTTACTGGACCCGTCAGCCGAAGATTTTGACGCGCAGCTACGGGCGCAGTTTGGTGGTTCGCTGGCGCAGaaa < 1:101768/250‑1 (MQ=255) cgcTCATGCGGTGCGTCGCGCAGCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTCGGGGCGGGGCCAATCGGTCTGGGCGCGGCGGCAATCGCTAAAGCCGATGGCGCACAGGTGGTGGTGGCGGATACCAGTCCGGAGCGCCGTGAACATGTGGCAACGCGTCTGGAATTACCTTTACTGGACCCGTCAGCCGAAGATTTTGACGCGCAGCTACGGGCGCAGTTTGGTGGTTCGCTGGCGCAGAAAGTGa < 1:106997/251‑1 (MQ=255) ccGGCGAGCAGGTGCTGGTGGTCGGGGCGGGGCCAATCGGTCTGGGCGCGGCGGCAATCGCTAAAGCCGATGGCGCACAGGTGGTGGTGGCGGATACCAGTCCGGAGCGCCGTGAACATGTGGCAACGCGTCTGGAATTACCTTTACTGGACCCGTCAGCCGAAGATTTTGACGCGCAGCTACGGGCGCAGTTTGGTGGTTCGCTGGCGCAGAAAGTGATCGACGCGACAGGTAATCAACATGCGATGAAt < 1:118148/251‑1 (MQ=255) ggCGAGCAGGTGCTGGTGGTCGGGGCGGGGCCAATCGGTCTGGGCGCGGCGGCAATCGCTAAAGCCGATGGCGCACAGGTGGTGGTGGCGGATACCAGTCCGGAGCGCCGTGAACATGTGGCAACGCGTCTGGAATTACCTTTACTGGACCCGTCAGCCGAAGATTTTGACGCGCAGCTACGGGCGCAGTTTGGTGGTTCGCTGGCGCAGAAAGTGATCGACGCGACAGGTAATCAACATGCGATGAATaa < 1:100237/251‑1 (MQ=255) ggggcggggcCAATCGGTCTGGGCGCGGCGGCAATCGCTAAAGCCGATGGCGCACAGGTGGTGGTGGCGGATACCAGTCCGGAGCGCCGTGAACATGTGGCAACGCGTCTGGAATTACCTTTACTGGACCCGTCAGCCGAAGATTTTGACGCGCAGCTACGGGCGCAGTTTGGTGGTTCGTTGGCGCAGAAAGTGAGCGACGCGACAGGTAATCAACATGCGATGAATAACACCGTGAATTTGATTCGTCa < 1:94068/251‑1 (MQ=255) ggcggggcCAATCGGTCTGGGCGCGGCGGCAATCGCTAAAGCCGATGGCGCACAGGTGGTGGTGGCGGATACCAGTCCGGAGCGCCGTGAACATGTGGCAACGCGTCTGGAATTACCTTTACTGGACCCGTCAGCCGAAGATTTTGACGCGCAGCTACGGGCGCAGTTTGGTGGTTCGCTGGCGCAGAAAGTGATCGACGCGACAGGTAATCAACATGCGATGAATAACACCGTGAATTTGATTCGTCAcg > 2:202991/1‑251 (MQ=255) gggCGCGGCGGCAATCGCTAAAGCCGATGGCGCACAGGTGGTGGTGGCGGATACCAGTCCGGAGCGCCGTGAACATGTGGCAACGCGTCTGGAATTACCTTTACTGGACCCGTCAGCCGAAGATTTTGACGCGCAGCTACGGGCGCAGTTTGGTGGTTCGCTGGCGCAGAAAGTGATCGACGCGACAGGTAATCAACATGCGATGAATAACACCGTGAATTTGATTCGTCACGGCGGCACGGTGGTAtt < 1:117721/249‑1 (MQ=255) ggcggcAATCGCTAAAGCCGATGGCGCACAGGTGGTGGTGGCGGATACCAGTCCGGAGCGCCGTGAACATGTGGCAACGCGTCTGGAATTACCTTTACTGGACCCGTCAGCCGAAGATTTTGACGCGCAGCTACGGGCGCAGTTTGGTGGTTCGCTGGCGCAGAAAGTGATCGACGCGACAGGTAATCAACATGCGATGAATAACACCGTGAATTTGATTCGTCACGGCGGCACGGTGGTATTTGTCGGcc < 1:213299/251‑1 (MQ=255) aTGGCGCACAGGTGGTGGTGGCGGATACCAGTCCGGACCACCGTGAACATGTGGCAACGCGTCTGGAATTACCTTTACTGGACCCGTCAGCCGAAGATTTTGACGCGCAGCTACGGGCGCAGTTTGGTGGTTCGCTGGCGCAGAAAGTGATCGACGCGACAGGTAATCACCATGCGATGAATAACACCGAGAATTTGATTCGTCACGGCGGCACGGGGGAATTTGTCGGCCTGTTTAAAGGTGAGCTGccg > 2:213357/1‑249 (MQ=255) acaGGTGGTGGTGGCGGATACCAGTCCGGAGCGCCGGGAACATGTGGCAACGCGTCTGGAATTACCTTTACTGGACCCGTCAGCCGAAGATTTTGACGCGCAGCTACGGGCGCAGTTTGGTGGTTCACTGGCGCAGAAAGTGATCGACGCGACAGGTAATCAACATGCGATGAATAACACCGTGAATTTGATTCGTCACGGCGGCACGGTGGTATTTGTCGGCCTGTTTAAAGGTGAGTTGCAGTTCTCCg < 2:163306/251‑1 (MQ=255) | TAGTGAGTATTTGAGCGTGCCGGTGGCGAACATTTTGCCCGCAGACGGTATTGACCCGCAGGCGGCAGCATTGATTGAACCTTTCGCTATTAGCGCTCATGCGGTGCGTCGCGCAGCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTCGGGGCGGGGCCAATCGGTCTGGGCGCGGCGGCAATCGCTAAAGCCGATGGCGCACAGGTGGTGGTGGCGGATACCAGTCCGGCGCGCCGTGAACATGTGGCAACGCGTCTGGAATTACCTTTACTGGACCCGTCAGCCGAAGATTTTGACGCGCAGCTACGGGCGCAGTTTGGTGGTTCGCTGGCGCAGAAAGTGATCGACGCGACAGGTAATCAACATGCGATGAATAACACCGTGAATTTGATTCGTCACGGCGGCACGGTGGTATTTGTCGGCCTGTTTAAAGGTGAGTTGCAGTTCTCCG > NC_000913/4596349‑4596800 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |