| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,100,839 | Δ29,307 bp | IS5‑mediated | yggN–[yghO] | 26 genes yggN, yggL, trmB, mutY, yggX, mltC, nupG, speC, yqgH, yqgA, pheV, yghD, yghE, yqhJ, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, [yghO] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3100839 | 3131166–3130144 | 29306–30328 | 31 [0] | [5] 6 | yggN–[insH9] | yggN,yggL,trmB,mutY,yggX,mltC,nupG,speC,yqgH,yqgA,pheV,yghD,yghE,yqhJ,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,[insH9] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3100838 | 0 (0.000) | 31 (1.310) | 28/496 | 0.1 | 100% | intergenic (‑110/+66) | ansB/yggN | L‑asparaginase 2/DUF2884 domain‑containing protein YggN |
| ? | NC_000913 | 3130146 = | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
GTTAGATTTGGTTGCGGAGTCACCACCACCGGCAATGGTCCCGCCGGTTGCTAAAATGGTGATATTGGGTAATGCCAATGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCCTTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACGAAGAATTAAACGGCATAAAAAAGTATTATGCCGTCTTAAAATAGAGGATTATTTTAAATTCCCGACCAGGGCTTTGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGCCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCAC > NC_000913/3100591‑3101086 | gTTAGATTTGGTTGCGGAGTCACCACCACCGGCAATGGTCCCGCCGGTTGCTAAAATGGTGATATTGGGTAATGCCAATGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCCTTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGgg > 1:238323‑M1/1‑248 (MQ=255) ggTTGCGGAGTCACCACCACCGGCAATGGTCCCGCCGGTTGCTAAAATGGTGATATTGGGTAATGCCAATGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCACTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCCTTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGggaaggtgcga < 1:66214‑M1/250‑12 (MQ=255) cGGAGTCACCACCACAGGCAATGGTCCCGCCGGTTGATAAAATGGTGATATTGGGTAATGCCAATGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCCTTAGCTCTGTATGGGAAATTTGACGTTGAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGggaaggtgcgaacaagt > 2:235685‑M1/1‑234 (MQ=255) ggCAATGGTCCCGCCGGTTGCTAAAATGGTGATATTGGGTAATGCCAATGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCCTTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGggaaggtgcgaacaagtccctgatatgagatc > 2:155161‑M1/1‑218 (MQ=255) cTAAAATGGTGATATTGGGTAATGCCAATGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCCTTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat > 2:237701‑M1/1‑198 (MQ=255) gggTAATGCCAATGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCAAGTTACGTGAACGCTACGCCTTATCCCTTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatc > 1:223898‑M1/1‑182 (MQ=255) ggtcatgacaatgatgcACCACTCAACCCCCTAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGATACGTGAACGCTACGCATTATACCTTAGCTCTGAATGGGAACTTTGACGTTAACCAATTTACAACGTGAATCTATTTTGGAGATCTACAAAGTTAAggaagatgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcat > 2:147665‑M1/9‑181 (MQ=255) tGCCAATGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGCGCCGTCTTTTTCAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCCTTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgaggccatagaacagggttcatcatgcgtc > 2:206875‑M1/1‑176 (MQ=255) ccAATGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCCTTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGggaaggtgcgaacaagtccctgatatgatatcatgtttgtcatctggagccatagaacagggttcatcatgagtcat < 1:111707‑M1/251‑78 (MQ=255) gctgcACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCCTTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaact < 2:172210‑M1/251‑83 (MQ=255) cacTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCCTTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttc < 1:42324‑M1/251‑90 (MQ=255) aaaaCCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCCTTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGggaaggtgctaacaagtccctgatatgagatcatgtttttcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccg < 1:143065‑M1/251‑94 (MQ=255) tGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCCTTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagacc > 2:167434‑M1/1‑123 (MQ=255) tcctccagccacatgcccgctacgcattatcccctACATCTGTATGGGAAATCAGACGTTAAACAATTTACCACGAAAATATATTTTGGAGATATACAAAGTTACggaaggtgcgaacaagtccctgatatgagatcctgtttgtcatctggagccatagaccagggctcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcc > 2:121581‑M1/18‑105 (MQ=255) cAGTTACGTGAACGCTACGCATTATCCCTTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcat < 1:45230‑M1/251‑152 (MQ=255) aCGTGAACGCTACGCATTATCCCTTAGCTCTGTATGGGAAATTTGACGTGAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGggaaggtgcgaacaagtccctgatatgagagcatttttgtcatctggagccatagaacagggttcatcaggagtcatcaacgtaccttcgccgacagtgaagtcagcagtaagcgccgccaggccagaaaagagattttcttgtcccgcatggagc < 1:154706‑M1/251‑157 (MQ=255) tACGCATTATCCCTTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgcc > 1:92237‑M1/1‑85 (MQ=255) aTTATCCCTTAGCTCTGTATTGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggatccatagaacagggttcatcatgaggcatcaacttaccttcgccgacagtgaattcatcagtaagcgccgtgagatgagaaaagagatggtcttgtcccgcatggagcagattctgccatggc < 1:101744‑M1/251‑172 (MQ=255) gTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATAGTTTGGAGATCTACAAAGGTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacgtaccttctccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattgtcttgtcccgcatggagcagattctgccatggcaaaacttgggggaagt < 2:226194‑M1/251‑188 (MQ=255) gTATGGGAAATTGGACGTTAAACAAGTTACAACGTGAATATATTTTGGAGATCTACAAAGTTTGggaaggtgcgaacaaggccctgatatgggagcatgtttgtcatctggagccataggacagggttcatcatgagtcatcaacttacgttcgccgacagggaattcagcagtaagctccgtcataccagaaaagagatttgcttgtcccgcatggagcagattcttccatggcaaaacaggttggaagg < 2:134031‑M1/251‑188 (MQ=255) gACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttt > 1:161795‑M1/1‑51 (MQ=255) cAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGggaaggtgcgaacacgtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagacc > 2:26608‑M1/1‑42 (MQ=255) cAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacgtatcttcgccgacagtgaattcagcagtaagcgccgtcagacc < 1:26608‑M1/167‑126 (MQ=255) aaCGTGAATATATTTTGGAGATCTACAAAGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggctggtaa < 2:17796‑M1/251‑218 (MQ=255) aaCGTGAATATATTTTGGAGATCTACAAAGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggctggta > 1:162936‑M1/1‑34 (MQ=255) atatTTTGGAGATCTACAAAGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggctggtaatggccggc < 2:144172‑M1/250‑226 (MQ=255) tttGGAGATCTACAAAGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggctggtaatggccggcgacct > 2:182510‑M1/1‑21 (MQ=255) gagaTCTACAAAGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggctggtaatggccggcgaccttatc > 2:8113‑M1/1‑17 (MQ=255) cTACAAAGTTAGggaaggggcgaacaagtccctgatatgagctcatgtttgtcatctggtgccatagaacagggtccctcatgcgtcatcaactcaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaacacatggtcgaagtcatcgagccgttttaccccaagactggcaatggcaggcgaccttatccgctg > 1:99644‑M1/1‑12 (MQ=255) aaGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggctggtaatggccggcgaccttatccgctggaaac > 2:184914‑M1/1‑7 (MQ=255) tAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggctggtaatggccggcgaccttatccgctggaacccatg > 1:170518‑M1/1‑3 (MQ=255) | GTTAGATTTGGTTGCGGAGTCACCACCACCGGCAATGGTCCCGCCGGTTGCTAAAATGGTGATATTGGGTAATGCCAATGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCCTTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACGAAGAATTAAACGGCATAAAAAAGTATTATGCCGTCTTAAAATAGAGGATTATTTTAAATTCCCGACCAGGGCTTTGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGCCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCAC > NC_000913/3100591‑3101086 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |