| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,560,455 | 1 | . | G | 96.3% | 94.5 / ‑4.0 | 27 | intergenic (+589/+167) | rtcR/glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base G (13/13); total (14/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 | |||||||||||
CTTCTTTTACCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCG‑TCG‑AGCCATTGGGG‑ATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCC‑GCACCGCCATGA‑TGGC‑CAGGATCAGGTTTTGCTCC‑GCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGCGATGTGTGCTCC > NC_000913/3560207‑3560699 | cttcttTTACCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCG‑TCG‑AGCCATTGGGG‑ATTTG‑CTCCGCCACTTTGCGGACGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCC‑GCACCGCCATGA‑TGGcgc > 1:231790/1‑249 (MQ=255) tACCATCAACGTGTTAGCAACGTGGAGATTGTTGGTGACAATGCGCAAATTGCTGGGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCG‑TCG‑AGCCATTGGGG‑ATTTG‑CTCCGCCACTTTGCGGACGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACGGGAAGGCAGCGCC‑GCACCGCCATGA‑TGGCGCAGGATc < 1:105538/250‑1 (MQ=255) ccATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCG‑TCG‑AGCCATTGGGG‑ATTTG‑CTCCGCCACTTTGCGGACGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCC‑GCACCGCCATGA‑TGGCGCAGGATCAgg > 1:8961/1‑251 (MQ=255) catcacagggttaaaaccGTTGGGATTTTTGGTAACAATGAGAAAATTGCGGTGATGGAGCAGGGCGGCCCCTCCCGCTTCCGGCGGGGGGCCGATATCGAAAAACGGCG‑GCG‑‑GCCCTTGGGGGATTGC‑CTCCGCCACTTTGCGGCCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACGGGAAGGCAGCGCC‑GCACCGCCATGA‑TGGCGCAGGATCAGGt < 2:75836/234‑1 (MQ=255) ggTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCG‑TCG‑AGCCATTGGGG‑ATTTG‑CTCCGCCACTTTGCGGACGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCC‑GCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCC‑GCCCGCTCATTGAGGTCgcggc > 1:68273/1‑251 (MQ=255) aaaTTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCG‑TCG‑AGCCATTGGGG‑ATTTG‑CTCCGCCACTTTGCGGACGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCC‑GCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCC‑GCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCgg > 1:101408/1‑251 (MQ=255) aaTTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCG‑TCG‑AGCCATTGGGG‑ATTTG‑CTCCGCCACTTTGCGGACGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCC‑GCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCC‑GCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCggg > 1:20136/1‑251 (MQ=255) ttGAGCAGGGCGTGCGCTCCCGCTTCCGTCGTGGTGCCCATATCGATAAACAGCG‑TCG‑AGCCATTGGGG‑ATTTG‑CTCCGCCACTTTGCGGACGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCATCGCC‑GCACCGCCATGA‑TCGCGCAGGATCAGGCTTTGCGCC‑GCCAGCTCATTGAGGTCgcgggtaatcacctgcggggtgccgggga > 2:6209/1‑225 (MQ=255) gcgtccgCTCCCGCTTCCGGCGGGGTGCCGATTTCTA‑AAACCGGGCTCG‑CGCCATGGGGG‑TTTTC‑CTCCGCCACTTGGCGGACTATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACGGGAAGGCAGCCCC‑GCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCC‑GCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTAc < 2:151143/251‑1 (MQ=255) gtggcgttACCGCTTCCGGCGTGGTGCTGATTTCGAAAACCTGC‑‑TCGGACCTATTGGGG‑‑TTTGTCTCCGCCACTTTGCGGACTATGCGCTCTGTTGCTCCGGTCTGGGGGGCTTTGCGATCGTGCAACGGCGTTTTAACAGACCTGGAAGCCAGCGCC‑GCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCC‑GCCAGCTCATTGAGGCCGCGTCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTAc < 2:151130/243‑1 (MQ=255) cGTGGTGCCGATATCGATAAACAGCG‑TCG‑AGCCATTGGGG‑ATTTG‑CTCCGCCACTTTGCGGACGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCC‑GCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCC‑GCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACAt > 1:235030/1‑251 (MQ=255) cctatatAGATAAACAGGG‑TCG‑GGCAATTGGGT‑ATTTC‑CCCCGCCACTTTGCGGACGATGCGCTCGTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGGGGGTTAACCGAACTGGAAGGCAGCGCC‑GCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCC‑GCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCctg < 2:235030/248‑1 (MQ=255) g‑AGCCATTGGGG‑ATTTG‑CTCCGCCACTTTGCGGACGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCC‑GCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCC‑GCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGataa > 2:165923/1‑250 (MQ=255) ccTCCGCCACTTTGCGGCCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCC‑GCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCC‑GCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTtgt < 1:229122/250‑1 (MQ=255) ttggCGGACGATGCCTTCTTTTTCTTGGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACGGAAAGGCGGCGCC‑GCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCC‑GCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTc < 2:180736/247‑1 (MQ=255) acggtGCGCTTTTTTTCTGCGGTCGGGGGGGCCGTGCGAGCGTGCCACGGCGTGTTAACCGAACGGGAAGGCAGCGCC‑GCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCC‑GCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATaa < 2:98799/247‑1 (MQ=255) gcTCTTTTTCTTCGGTCTGGGTGGCATTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCC‑GCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCC‑GCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTg < 1:59220/251‑1 (MQ=255) ctTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTACCAAGAAGTCTTAACCGAAATGGCAGGCAGCGCC‑CCACCGCCACGC‑CGGCGCACGATCACGCTTTGCCCC‑GCCAGCTCATTGAAGACCCGGCGAATAATCTGCAGGCCGACGGAGAAATACTCTACCAGCTCTTCGGTACTGACATAACCCAGATATTTAACCAGTTCGACAATACCGTTGTGACGTTGCGCTTGTTTCATTTATAAATCCCTGGa > 1:116176/1‑250 (MQ=255) cTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCC‑GCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCC‑GCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTAttttcgtttt > 2:17418/1‑251 (MQ=255) ggggTGGCCTGGCGAGCTGGCCACGGCGTGTTAACCGACCTGTAAGGC‑GCGCCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCC‑GCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTAttttcgttttc < 2:223594/250‑1 (MQ=255) ttGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCC‑GCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCC‑GCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTg > 1:199763/1‑250 (MQ=255) cGTGTTAACCGAACTGGAAGGCAGCGCC‑GCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCC‑GCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTGCGCGCATTGAGCGAATCAACAAAAGcc < 1:182426/251‑1 (MQ=255) gtTAACCGAACTGGAAGGCAGCGCC‑GCACCGCCATGACAGAA‑AAGGATTACGTCTTGCCCCCACCA‑CTCATTGAGGTAGCCACGAATACTCTGCGGGCTGAAGGACAAATCCTCTACCAGCCCTTCAGCCCTGACATCACACTGCTGTTTAACCAGTTCGATAATACCGTTGTACCGTTGTGTTTGTTTCCTTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGCGCGAATCCACAAAACCCATc > 1:109251/1‑251 (MQ=255) gtTAACCGAACTGGAAGGCAGCGCC‑GCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCC‑GCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATc > 1:210652/1‑251 (MQ=255) ggAAGGCAGCGCC‑GCACCGCTATGA‑TGGCGCAGGATCAGGTTTTGCTCC‑GCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCTATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCAc < 1:152884/250‑1 (MQ=255) aaGGCAGCGCC‑GCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCC‑GCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGc > 1:132162/1‑251 (MQ=255) gcACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCC‑GCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGCg > 2:29840/1‑250 (MQ=255) ga‑tgGCGCAGGATCAGGTTTTGCTCC‑GCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGCGATGTGTGCTcc < 2:31348/251‑1 (MQ=255) | CTTCTTTTACCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCG‑TCG‑AGCCATTGGGG‑ATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCC‑GCACCGCCATGA‑TGGC‑CAGGATCAGGTTTTGCTCC‑GCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGCGATGTGTGCTCC > NC_000913/3560207‑3560699 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |