| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,126,210 | 0 | T | G | 35.3% | 100.6 / 12.9 | 68 | T201P (ACC→CCC) | priA | primosomal protein N' |
| Reads supporting (aligned to +/- strand): ref base T (19/25); new base G (24/0); total (43/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.50e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GTCGTTCAGGCCGGAATGCAGAACTTCCACGGGGGCATTAAAACGTTCACGAAAACGGGCGATAGTTTGCGGTGTCAGGCCGATTTCCGGCACCATCACCAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTCGGTATTCAATCGCAACCGCTCACC‑AG‑AAACGG‑CATAGTTCGTTCGCCAGT‑CGCTAAACTCTGGTGTTTCACTTGCTAAATCACACAGA‑CCTTTTTTGCGTAGCGCCTGCAACGCGGCATCATTAAATTCGAGCGTGGCGACCTGGTCGCGCCAGATTTTG‑CCTTGCCGTAACGCCGCCAGCGCCTGTTGTTGCTTGGGGGAGCGTTTCAGGCTGTTCAGATCCACCGCCTGGCCTTGTTCAGTGGCAAACC > NC_000913/4125965‑4126458 | gTCGTTCAGGCCGGAATGCAGAACTTCCACGGGGGCATTAAAACGTTCACGAAAACGGGCGATAGTTTGCGGTGTCAGGCCGATTTCCGGCACCATCACCAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGGCTGTTTGGTATTcc > 1:218485/1‑250 (MQ=255) aagaccTTCCACGGGGGCATTAAAACGTTCCGGAAAACGGGGGATAGTTTGCGGTGCCAGGCCGATTTCCGGCACCATCACCAGCGCCTGTTTGCCCTGAGCGAGCACGGTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTCGGTATTCAATCGCAACCGCTCACC‑Ag < 2:373016/246‑1 (MQ=255) ttCCACGGGGGCATTAAAACGTTCACGAAAACGGGCGATAGTTTGCGGTGTCAGGCCGATTTCCGGCACCATCACCAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGACTTGCGCCAACGGCGGC‑GGACTGTTCGGTATTTCATTGCAAACGCTCACC‑AG‑CAACgg > 1:178034/1‑251 (MQ=255) tCCACGGGGGCATTAAAACGTCCACGAAAACGGGCGATAGTTTGCGGTGTCAGGCCGATTTCCGGCACCATCACCAGCGCCTGTTTGCCCTGGGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTCGGTATTCAATCGCAACCGCTCACC‑AG‑AAACg < 1:439/249‑1 (MQ=255) aCGGGGGCATTAACACGTTCACGAAAACGGGCGATAGTTTGCGGTGTCAGGCCGATTTCCGGCACCATCACCAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTCGGTATTCAATCGCAACCGCCCACC‑CG‑AAACGG‑CAt > 2:336050/1‑250 (MQ=255) gggggCATTAAAACGTTCACGAAAACGGGCGATAGTTTGCGGTGTCAGGCCGATTTCCGGCACCATCACCAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTCGGTATTCAATCGCAACCGCTCACC‑AG‑AAACGG‑CATAgt < 2:150362/251‑1 (MQ=255) gCATTAAAACGTTCACGAAAACGGGCGATAGTTTGCGGTGTCAGGCCGATTTCCGGCACCATCACCAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTCGGTATTCAATCGCAACCGCTCACC‑AG‑AAACGG‑CATAgttcgt < 1:319522/251‑1 (MQ=255) gCATTAAAACGTTCACGAAAACGGGCGATAGTTTGCGGTGTCAGGCCGATTTCCGGCACCATCACCAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTCGGGATTCCACCGCAACCGCTCCCC‑CG‑AAACAG‑CAttggtgcg > 2:17063/1‑244 (MQ=255) tCACGAAAACGGGCGATAGTTTGCGGTGTCAGGCCGATTTCCGGCACCATCACCAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCCGGTCGGGATTCAATCGCAACCGCTCACC‑AG‑AAACGG‑CATAggtcgtatgcccgtcgcc > 1:231154/1‑239 (MQ=255) aCGAAAACGGGCGATAGTTTGCGGTGTCAGGCCGATTTCCGGCACCATCACCAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTCGGGATTCAATCGCAACCCCCCCCC‑AG‑AAAACG‑CATAGTTCGTTCCCCAGT‑CGcga > 1:487950/1‑248 (MQ=255) aaaCGGGCGATAGTTTGCGGTGTCAGGCCGATTTCCGGCACCATCACCAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGACAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGGCTGTTTGGGATTCAATATCAACCGCCCCCC‑AC‑AAACGGGCA‑AATTCCTTCCCCAGT‑CCCTAAActc > 2:103451/1‑251 (MQ=255) cGGGCGATAGTTTGCGGTGTCAGGCCGATTTCCGGCACCATCACCAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTCGGGATTCAATCTCAACCGCTCACC‑AG‑AAACGG‑CATAGTTCGTTCCCCCAT‑CGCTAAACTCTgg > 1:317920/1‑251 (MQ=255) cGATAGTTGGCGGTGTCAGGCCGATTTCCGGCACCATCACCAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTCGGTATTCAATCGCAACCGCTCACC‑AG‑AAACGG‑CATAGTTCGTTCGCCAGT‑CGCTAAACTCTGGTGtt < 1:112300/251‑1 (MQ=255) gATAGTTTGCGGTGTCAGGCCGATTTCCGGCACCATCACCAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTCGGTATTCAATCGCAACCGCTCACC‑AG‑AAACGG‑CATAGTTCGTTCGCCAGT‑CGCTAAACTCTGGTGttt < 1:458910/251‑1 (MQ=255) ttGCGGTGTCAGGCCGATTTCCGGCACCATCACCAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAACCCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTCGGTATTCAATCGCAACCGCTCACC‑AG‑AAACGG‑CATAGTTCGTTCGCCAGT‑CGCTAAACTCTGGTGTTTCACtt < 1:232647/250‑1 (MQ=255) tGCGGTGTCAGGCCGATTTCCGGCACCATCACCAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGGCCGTTCGGTATTCAATCGCAACCGCCCCCC‑AC‑AAACGG‑CATAGGTCGTTCCCCCGT‑CGCTAACCTCTGGCGTTTCCCTTGc > 2:53615/1‑251 (MQ=255) ggTGTCAGGCCGATTTCCGGCACCATCACCAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGG‑GGCCTGTTCGGTATTCAATCGCAACCCCTCCCC‑CG‑AAACCG‑CATAATTCGTTCGCCAGT‑CGCTAAAACCTGGGGTTTCACTTTCTa > 2:412200/1‑250 (MQ=255) gtgtCAGGCCGATTTCCGGCACCATCACCAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTCGGTATTCAATCGCAACCGCTCACC‑AG‑AAACGG‑CATAGTTCGTTCGCCAGT‑CGCTAAACTCTGGTGTTTCACTTGCTaaa < 1:218275/251‑1 (MQ=255) cGATTTCCGGCACCATCACCAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGGCCGTTTGGTGTTCTATCCCAAACGCGCACC‑CG‑AAACTG‑GATAGTTCGTTCGCCCGT‑CGCTCACCTCTGGTGTTTTTCTTGCTTAATcacacac > 2:185780/1‑249 (MQ=255) ttCCGGCACAATCACCAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTCCCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTCGGTATTCAATCGCAACCGCTCACC‑AG‑AAACGG‑CATAGTTCGTTCGCCAGT‑CGCTAAACTCTGGTGTTTCACTTGCTAAATCACACAGA‑CCt < 2:436542/250‑1 (MQ=255) tCCGGCACCATCACCAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTCGGGATTCAATCGCAACCCCTCACC‑AG‑AAACGG‑CATAGATCGTTCGCCAGT‑CGCTAAACTCTGGGGTTTCACTTTCTAAATCACACAGA‑CCttt > 1:490474/1‑251 (MQ=255) ccGGCACCATCACCAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTCGGGATTCAATCGCAACCGCTCACC‑AG‑AAACGG‑CATAGTTCGTTCCCCAGT‑CGCTAAACTCTGGTGTTTCCCTTTCTAAATCACACAGA‑CCtttt > 1:126365/1‑251 (MQ=255) ggCACCATCACCAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTCGGGATTCAATCGCAACCCCTCACC‑CG‑AAAAGG‑CATAGTTTTTTTCCCAGT‑CGCCAAACTCTGGTGGTTCCCTTGCTAAATCCCACAAA‑CCtttttt > 1:132621/1‑251 (MQ=255) cACCATCACCAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGATGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGG‑GGCCTGGTTGGGATTCAATCGCAAAAGCTCAAC‑AGGAAACGG‑C‑TAGTTCGTTTTCCACT‑CGCTAAAATCTGGTGGTTCAACTGCTAAATCACACAGA‑CCtttttttt > 1:368681/1‑249 (MQ=255) aTCACCAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCCGTTCGGGCTTTAATCGCAACCGCTCACC‑AG‑CAACGG‑CATAGTTCGTTCGCCACT‑CGCTAAACTCTTGTGTTTCACTTTCTAAAACAAACAGA‑CCCTTTTTGCGt > 2:107829/1‑249 (MQ=255) aTCACCAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAACTGCGCCAACGGCGGT‑GGCCCGTTCGGGATTCAAACGCAAACCCTCACC‑AG‑CAAAGG‑CATAGTTCGTTCGCCACG‑CGCTAAACCCTGGTGGTTCACTTTCTCAATCACACAAAACCttttttcgc > 2:397679/1‑246 (MQ=255) cACCAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCGGAGATAAACCTCCGTTTTACCGGAGCCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTCGGTATTCAATCGCAACCGCTCACC‑AG‑AAACTG‑CATAGTTCGTTCGCCAGT‑CGCTAAACTCTGGTGTTTCACTTGCTAAATCACACAGA‑CCTTTTTTGCGTAgcg < 1:74724/251‑1 (MQ=255) ccAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCCGGTCGGTATTCAATCGCAACCGCTCACC‑AG‑GAACGG‑CATAGTTTGTTCGCCAATACCCTAA‑CACTGGTGGTTCACTTGCTAAAACACAAAGA‑ACTTTTTTGCGGAGCGcc > 2:486356/1‑251 (MQ=255) tGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTCGGTATTCAATCGCAACCGCTCACC‑AG‑AAACGG‑CATAGTTCGTTCGCCAGT‑CGCTAAACTCTGGTGTTTCACTTGCTAAATCACACAGA‑CCTTTTTTGCGTAGCGCCTGCAACGCGGc < 1:296342/250‑1 (MQ=255) ccTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTCGGTATTCAATCGCAACCGCTCCCC‑AG‑AAACGG‑CATAGTTCGTTCGCCAGG‑CGCTAAACTCTGGTGTTTTACTTGCTAAATCACACAGA‑CCTTTTTTGCGTAGCGCCTGCAACGCGGcctc > 1:491881/1‑247 (MQ=255) cTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTCGGTATTCAATCGCAACCGCTCACC‑AG‑AAACGG‑CCTAGTTCGTTCGCCAGG‑CGCTAAACTCTGGTGTTTCACTTTCTAAATCACACAGA‑CCTTTTTTTCGTAGCGCCTGCAACGCGGcatcat > 1:185209/1‑251 (MQ=255) tGAGCGAGCAAGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTCGGGATTCAATCCCAACCCCCCACC‑AC‑AAACGG‑CATAGTTCGTTCGCCAGT‑CGCTAAACTCTGGTGGTTCACTTGCTAAATCAAACAGA‑CCTTTTTTTCGTAGCGCCTGCAACGCGGCATCAtt > 1:178753/1‑251 (MQ=255) gagcgagcACGTTTTCCAGTACGCTGAGATAACCCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTCGGTATTCAATCGCAACCGCTCACC‑AG‑AAACGG‑CATAGTTCGTTCGCCAGT‑CGCTAAACTCTGGTGTTTCACTTGCTAAATCACACAGA‑CCTTTTTTGCGTAGCGCCTGCAACGCGGcatcat < 2:255433/249‑1 (MQ=255) gcACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTCGGTATTCAATCGCAACCGCTCACC‑AG‑AAACGG‑CATAGTTCGTTCGCCAGT‑CGCTAAACTCTGGTGTTTCACTTGCTAAATCACACAGA‑CCTTTTTTGCGTAGCGCCTGCAACGCGGCATCATTAAATTCg < 1:170244/251‑1 (MQ=255) aCGTTTTCAAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTCGGTATTCAATCGCAACCGCTCACC‑AG‑AAACGG‑CATAGTTCGTTCGCCAGT‑CGCTAAACTCTGGTGTTTCACTTGCTAAATCACACAGA‑CCTTTTTTGCGTAGCGCCTGCAACGCGGCATCATTAAATTCGAg < 2:437205/251‑1 (MQ=255) cGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTTGGGATTCAATCGCAACCGCTCACC‑AG‑AAACGG‑CATAGTTCGTTCCCCAGT‑CGCTAAAATCTGGTGTTTCACTTGCTAAATCACACAGA‑CCTTTTTTTCGTAGCGCCTGCAACGCGGCATCATTAAATTCGAGc > 1:79622/1‑251 (MQ=255) ttCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTCGGGATTCCATCGCAAACGCTCACC‑AG‑AAACGG‑CATAGTTCGTTCCCCCGT‑CGCTAAACTCTTGTGGTTCACTTGCTAAATCACACAGA‑CCTTTTTTTCGTAGCGCCTGCAACGCGGCATCATTAAATTCGATCGTgg > 2:198072/1‑251 (MQ=255) tCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTCGGTATTCAATCGCAACCGCTCACC‑AG‑AAACGG‑CATAGTTCGTTCGCCAGT‑CGCTAAACTCTGGTGTTTCACTTGCTAAATCACACAGA‑CCTTTTTTGCGTAGCGCCTGCAACGCGGCATCATTAAATTCGAGCGTgg < 1:121127/250‑1 (MQ=255) ccAGTACGCTGAGATAACCCTCCGTTTTCCCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTCGGTATTCAATCGCAACCGCTCACC‑AG‑AAACGG‑CATAGTTCGTTCGCCAGT‑CGCTAAACTCTGGTGTTTCACTTGCTAAATCACACAGA‑CCTTTTTTGCGTAGCGCCTGCAACGCGGCATCATTAAATTCGAGCGTGGCg < 2:341665/251‑1 (MQ=255) aTAAACCTACGATTTACCGGAACCGGTAACGCCAGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTACGCCAACGGCGGTTGGCC‑GGTCGGTATTCAATCGCAACCCCTCACC‑AG‑AAACGC‑CATAGATCGTTCGCCCTT‑CGCTAAACTCTTGTGTTTCACTTGCTACATACCACACA‑CCTTTTTTGCTGAGTCCCTGCAACTCGGCCACATTAAATTAGAGCCTGGCgcaccgggcgcgcc > 2:294269/1‑238 (MQ=255) aaCCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTTGGGATTCAATCGCAACCGCTCACC‑CG‑AAAAGG‑CATAGTTCGTTCGCCCGT‑CTCTAAACTCTGGGGTTTTACCTGCTAAATCACAAAGA‑CCTTTTTTGCGTAGCGCCTTCAACGGTGCATCATTAAATTCGAGCGTGGCGAACTGGTCGCGcccg > 2:583400/1‑248 (MQ=255) aCCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCCGTTCGGGATTCAAACGCCAACGCCCACC‑AG‑AAACGG‑CAAAGTTCGTTCGCCCGG‑CCCTAAAATCTTGGGTTTCACTTGCTTAATTACCCAGA‑CCTTTTTTTCGTAGGGGCCGCCAAACCGCGACATTAAATTCGAGCGTGGCGACCTGGTCGCGcccgct > 2:47444/1‑247 (MQ=255) ccTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGG‑GGCCTGTTCGGTATTCAATCGCAACCGCTCACC‑AG‑AAACGG‑CCTAGTTCGTTCCCCAGT‑CGCTCAACCCTGGTGTTTCACTTGCTAAATCCCACAGA‑CCTTTTTTGCGTAACGCCCGCAAAGCGGCATCCTTAAATTTGAGCGTGGGGACCTGGGAGCGCCAGAtt > 1:281317/1‑251 (MQ=255) cccGTTTTACCGGACCCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTCGGTATTCAATCGCAACCGCTCACC‑AG‑AAACGG‑CATAGTTCGTTCGCCAGT‑CGCTAAACTCTGGTGTTTCACTTGCTAAATCACACAGA‑CCTTTTTTGCGTAGCGCCTGCAACGCGGCATCATTAAATTCGAGCGTGGCGACCTGGTCGCGCCAGAtttt < 2:470086/250‑1 (MQ=255) ccGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTCGGGATTTAATCGCAACCGCTCCCC‑AG‑AAACGG‑CCTAGTTCTTTCCCCCGT‑CGCTAAACTCTGGTGTTTTACTTGCTAAATCACACCAA‑CCTTTTTTTCGTCGCGCCTGCAACGCGGCACCATTAAATTCGCGCGGGGCGGCCTGGTCGCGCCAGATTttt‑cctttccc > 2:155947/1‑247 (MQ=255) cGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCCGTTCGGTTTTCAATCGCAACCGCCCACC‑AG‑AAACGG‑CATAGTTCGTTCTCCAGT‑CGCTTAACTCTGGGGTTTTACTTGCTAAATCACACAGA‑CCTTTTTTGCGTAGCGCCTGCAACGCGGCATCATTAAATTCGAGCGTGGCGACCTGGTCGCGCCCGATTTTG‑CCTTGCCgg > 1:300565/1‑250 (MQ=255) aaCCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTCGGTATTCAATCGCAACCGCTCACC‑AG‑AAACGG‑CATAGTTCGTTCGCCAGT‑CGCTAAACTCTGGTGTTTCACTTGCTAAATCACACAGA‑CCTTTTTTTCGTAGCGCCTGCAACGCGGCATCATTAAATTCGAGCGTGGCGACCTGGTCGCGCCCGATTTTG‑CCTTGCCGTAAc > 1:293909/1‑251 (MQ=255) cGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGACTGTTCGGGATTCAATCGCAACCGCTCACC‑AG‑AAACGG‑CATAGTTCGTTCGCCAGT‑CGCTAAACTCTGGGGTTTCCCTTGCTAAAACACACAAA‑CCTTTTTTGCGTAGCGCCTGCAACTCGGCATCATTAAATTCGAGCGTGTGGACCTGGGGGCGCAAGAGTTTT‑CCTTTCAGTAAcggc > 1:170642/1‑249 (MQ=255) aaCGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGGTCGGTATTTAATCGCAAACGCTCACC‑AG‑AAACGG‑CATCGGTCGTTCGCCAGT‑CGCTAAACTCTGGGGTTTCACTTGCTTAATCTCACACA‑CCCTTTTTGCGGAGCGCCCGCAACGCGGCATCATTACATTCGAGCGTGGCGACCTGTTCGCTCCAGATTTTG‑CCTTGCCCTAACgccgcc > 2:455604/1‑250 (MQ=255) gcccgccAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACCGCGGC‑GGACAGATCGGGCTTTAATCGCAACCGCTCCCCCGG‑CAACG‑‑CCTAGTTCTTTTTCCCGC‑CGCCAAACTCTGCTGTTTTCCTTTCTAAATCACACACA‑CCTTTTTTTCGTTGCGCCTTCCCCTCCGCATCATTTAATTTGAGCGTTGCGACCTCGCCCCGCCCGCTTTTG‑CCTTTCCTTTACgccgcccgcc > 1:56982/1‑247 (MQ=255) ccgccAGCAGCCAGGCAGAACAAGGATCTGCCGCGCTATGAATTGCGCCAACGGCGGG‑TGCCTTTTCGGGATTCACTCGCCACCGCTCACC‑AG‑AAACGC‑CGTAGTTTGTTTGCCCGC‑CGCCTCACCCTTGTGTTTCACCTCCTAAATCACACAGA‑ACTTTTTTGCGTAGCGCCCGCAACGCGGCACCATTAAATTCGCGCGTGGCGACCTTGTCGCGCCCGATTTTT‑CCTTGCCGTAACACCCCCAGCGcc > 2:450742/1‑251 (MQ=255) gccAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTCGGTATTCAATCGCAACCGCTCACC‑AG‑AAACGG‑CATAGTTCGTTCGCCAGT‑CGCTAAACTCTGGTGTTTCACTTGCTAAATCACACAGA‑CCTTTTTTGCGTAGCGCCTGCAACGCGGCATCATTAAATTCGAGCGTGGCGACCTGGTCGCGCCAGATTTTG‑CCTTGCCGTAACGCCGCCAGCGCCtg < 2:126365/251‑1 (MQ=255) cagcCAGGCAGAAAAAGTATCTGCCGCGCTATGCATTGCGCCAACGGCGGT‑GGCCCGTTCGGTATTCCATCGCAACCGCCCCCC‑AG‑AAACGG‑CATAGTTCGTTCGCCCGG‑CGCTAAACTCCGGTGGTTCACTTGCTAAATCAACCACA‑CCTTTTTTTCGTAGCGCCTGCCACGCGGCATCATTAAATTCGAGCGTGGCGACCTGGTCGCGCCAGATTTTG‑CCTTGCCGTAACGCCGCCACCGCCTgttgtt > 2:526717/1‑251 (MQ=255) gAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTCGGGATTCAATCGCAACCGCCCACC‑AG‑AAACGG‑CATAGTTCGTTCGCCAGT‑CGCTAAACTCTGGTGTTTCACTTGCTAAATCACACAGA‑CCTTTTTTGCGTAGCGCCTGCAACGCGGCATCATTAAATTCGAGCGGGGCGACCTGGTCGCGCCAGATTTTG‑CCTTGCCGTAACGCCGCCAGCGCCCGTTGTTGCTTtggggg > 1:151661/1‑250 (MQ=255) aaaaaGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGGCCGTTCGGTATTCCATCCCCAACGCTCACC‑CG‑CAAAGG‑CAGAGTTCGTTCGCCAGG‑CGCTAAACTCTGGTGTTTCACCTTCTAAATCACACCGA‑CCTTTTTTGCGTCGCGCCCGCAACGCGGCATCCTTAAATTCGAGGGGGGCGACCTGGTCCCGCCCGATTTTGGCCTGGCCTTAA‑GACGCCCCCGCCCGGTGTTGCTTggggg > 2:135144/1‑249 (MQ=255) aaaaaGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTCGGTATTCAATCGCAACCGCTCACC‑AG‑AAACGG‑CATAGTTCGTTCGCCAGT‑CGCTAAACTCTGGTGTTTCACTTGCTAAATCACACAGA‑CCTTTTTTGCGTAGCGCCTGCAACGCGGCATCATTAAATTCGAGCGTGGCGACCTGGTCGCGCCAGAtt < 2:378828/206‑1 (MQ=255) aaaaaGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTCGGTATTCAATCGCAACCGCTCACC‑AG‑AAACGG‑CATAGTTCGTTCGCCAGT‑CGCTAAACTCTGGTGTTTCACTTGCTAAATCACACAGA‑CCTTTTTTGCGTAGCGCCTGCAACGCGGCATCATTAAATTCGAGCGTGGCGACCTGGTCGCGCCAGATTTTG‑CCTTGCCGTAACGCCGCCAGCGCCTGTTGTTGCTTggggg > 1:114219/1‑249 (MQ=255) aaaaaGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTCGGTATTCAATCGCAACCGCTCACC‑AG‑AAAAGG‑CATAGTTCGTTCCCCCGT‑CGCTAAACTCTGGTGTTTCACTTGCTAAATCACACAAA‑CCTTTTTTGCGTAGCGCCTGCAACGCGGCACCATTAAATTCGCGCGTGGCGACCTGGTCGCGCCAGAtt > 1:378828/1‑206 (MQ=255) gTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCCGTTCGGGATTCAAACGCAACCGCTCACC‑CG‑AAACGG‑CATAGTTTGTTCGCCAGT‑CGCTAAACTCTGGTGTTTCACTTGCTAAATCACCCAGA‑CCTTTTTTTCGTTGCGCCTGCAACGCGGCATCATTAAATTCCAGCGGGGCGACCTGGTCGCGCCCGATTTTG‑TCTTGCCGTAACGCCGCCCGCGCCTGTTGGTTCCTGGGGGAGCGttt > 2:474914/1‑251 (MQ=255) cTATGAATTGCGCCAACGGCGGT‑GGCCCGTTCGGGATTTAATCGCAACCGCTCACC‑AG‑AAACGG‑CATAGTTCGGTCGCCCGT‑CGCTAAACTCTGGTGTTTTCCTTGCTAAATCACACAGA‑CCTTTTTTGCGTAGCGCCCGCAACGCGGCATCATTAAATTCGAGCGTGGCGACCTGGTCGCGCCAGATTTTG‑CCTTTCCGTCACGCCGCCAGCGCCCGTTTTTGCTTGGGGGGGCGGTTCAGGCTGTTc > 2:269785/1‑249 (MQ=255) gAATTGCGCCAACGGCGGT‑GGCCTGTTCGGGATTCAATCGCAACCGCTCACC‑AG‑CAACGG‑GATAGTTCGTTAGCCAGT‑CGCTAAACTCTGGTGTTTCACTTGCTAAATCACACAGA‑CCTTTTTTGCGTAGCGCCTGCAACGCGGCATCATTAAATTCGAGCGTGGCGACCTGGTCGCGCCAGATTTTT‑CCTTTCCGTAACGCCGCCCGCGCCTGGTGTTGCTTGGGGGAGCGGTTCAGGCTGTTCAGATcc > 1:362109/1‑251 (MQ=255) ggcgcCAACGGCGGT‑GGCCTGTTCGGTATTCAATCGCAACCGCTCACC‑AG‑AAACGG‑CATAGTTCGTTCGCCAGT‑CGCTAAACTCTGGTGTTTCACTTGCTAAATCACACAGA‑CCTTTTTTGCGTAGCGCCTGCAACGCGGCATCATTAAATTCGAGCGTGGCGACCTGGTCGCGCCAGATTTTG‑CCTTGCCGTAACGCCGCCAGCGCCTGTTGTTGCTTGGGGGAGCGTTTCAGGCTGTTCAGATCCACCg < 2:182879/250‑1 (MQ=255) gcgcCAACGGCGGT‑GGCCTGTTCGGTATTCAATCGCAACCGCTCACC‑AG‑AAACGG‑CATAGTTCGTTCGCCAGT‑CGCTAAACTCTGGTGTTTCACTTGCTAAATCACACAGA‑CCTTTTTTGCGTAGCGCCTGCAACGCGGCATCATTAAATTCGAGCGTGGCGACCTGGTCGCGCCAGATTTTG‑CCTTGCCGTAACGCCGCCAGCGCCTGTTGTTGCTTGGGGGAGCGTTTCAGGCTGTTCAGATCCACCGc < 1:412200/251‑1 (MQ=255) gcgcCAACGGCGGT‑GGCCTGTTCGGTATTCAATCGCAACCGCTCACC‑AG‑AAACGG‑CATAGTTCGTTCGCCAGT‑CGCTAAACTCTGGTGTTTCACTTGCTAAATCACACAGA‑CCTTTTTTGCGTAGCGCCTGCAACGCGGCATCATTAAATTCGAGCGTGGCGACCTGGTCGCGCCAGATTTTG‑CCTTGCCGTAACGCCGCCAGCGCCTGTTGTTGCTTGGGGGAGCGTTTCAGGCTGTTCAGATCCACCGc < 1:572590/251‑1 (MQ=255) ggcggT‑GGCCTGTTCGTTATTCAATCGCAACCGCTCACC‑AG‑AAACGG‑CATAGTTCGTTCGCCAGT‑CGCTAAACTCTGGTGTTTCACTTGCTAAATCACACAGA‑CCTTTTTTGCGTAGCGCCTGCAACGCGGCATCATTAAATTCGAGCGTGGCGACCTGGTCGCGCCAGATTTTG‑CCTTGCCGTAACGCCGCCAGCGCCTGTTGTTGCTTGGGGGAGCGTTTCAGGCTGTTCAGATCCACCGCCTGGCCtt < 2:300160/251‑1 (MQ=255) ggcggT‑GGCCTGTTCGGTATTCAATCGCAACCGCTCACC‑AG‑AAACGG‑CATAGTTCGTTCGCCAGT‑CGCTAAACTCTGGTGTTTCACTTGCTAAATCACACAGA‑CCTTTTTTGCGTAGCGCCTGCAACGCGGCATCATTAAATTCGAGCGTGGCGACCTGGTCGCGCCAGATTTTG‑CCTTGCCGTAACGCCGCCAGCGCCTGTTGTTGCTTGGGGGAGCGTTTCAGGCTGTTCAGATCCACCGCCTGGCCtt < 2:406349/251‑1 (MQ=255) ggaggT‑GGCCTGTTCGGTATGCAATCGCACCCGCGCACC‑AG‑AAACGG‑CATAGTTCGTTCGCCAGT‑CGCTAAACTCTGGTGTTTCACTTGCTAAATCACACAGA‑CCTTTTTTGCGTAGCGCCTGCAACGCGGCATCATTAAATTCGAGCGTGGCGACCTGGTCGCGCCAGATTTTG‑CCTTGCCGTAACGCCGCCAGCGCCTGTTGTTGCTTGGGGGAGCGTTTCAGGCTGTTCAGATCCACCGCCTGGCCtt < 2:500617/248‑1 (MQ=255) ggTATTCAATCGCAACCGCTCACC‑AG‑AAACGG‑CATAGTTCGTTCGCCAGT‑CGCTAAACTCTGGTGTTTCACTTGCTAAATCACACAGA‑CCTTTTTTGCGTAGCGCCTGCAACGCGGCATCATTAAATTCGAGCGTGGCGACCTGGTCGCGCCAGATTTTG‑CCTTGCCGTAACGCCGCCAGCGCCTGTTGTTGCTTGGGGGAGCGTTTCAGGCTGTTCAGATCCACCGCCTGGCCTTGTTCAGTGGCAAAcc > 2:574614/1‑251 (MQ=255) | GTCGTTCAGGCCGGAATGCAGAACTTCCACGGGGGCATTAAAACGTTCACGAAAACGGGCGATAGTTTGCGGTGTCAGGCCGATTTCCGGCACCATCACCAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGT‑GGCCTGTTCGGTATTCAATCGCAACCGCTCACC‑AG‑AAACGG‑CATAGTTCGTTCGCCAGT‑CGCTAAACTCTGGTGTTTCACTTGCTAAATCACACAGA‑CCTTTTTTGCGTAGCGCCTGCAACGCGGCATCATTAAATTCGAGCGTGGCGACCTGGTCGCGCCAGATTTTG‑CCTTGCCGTAACGCCGCCAGCGCCTGTTGTTGCTTGGGGGAGCGTTTCAGGCTGTTCAGATCCACCGCCTGGCCTTGTTCAGTGGCAAACC > NC_000913/4125965‑4126458 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |