| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,704,350 | Δ390 bp | blr | blr | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1704350 | 1704739 | 390 | 28 [0] | [0] 27 | blr | blr |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1704349 | 0 (0.000) | 27 (0.780) | 27/486 | 0.4 | 100% | intergenic (‑41/‑202) | ydgJ/blr | putative oxidoreductase YdgJ/beta‑lactam resistance protein |
| ? | NC_000913 | 1704740 = | 0 (0.000) | intergenic (+64/‑209) | blr/cnu | beta‑lactam resistance protein/H‑NS‑ and StpA‑binding protein | |||||
AATGACAATCAGGTCTATGTTGGGATCGTTAAACAGATGCTTCGGCTCAGAGACAACCGTAACCGTTGGCCAGTCGGCTTTTACTTTTGTTTCATCACTGCTGGAGATTACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTATCCTTTACCCACGCTCAACAGTTTAATAACCTGCCAGCAATAAGGGATGTTGTTTAACTTAAGTCAAAAAAATAGCGAATTTTCCAACGACAAAAGCTAAATATCGCAAAAACCTCAGTAAAAATCTTGCTGGAGCTATTATTGCTAAGTAACATTTACCCCCTGAAGTTAATGGATCAATCAAGAGAGATGTGGGCTGTAATGAATCGTCTTATTGAATTAACAGGTTGGATCGTTCTTGTCG > NC_000913/1704099‑1704593 | aaTGACAATCAGGTCTAGTTTGGGATCGTTAAACAGATGCTTCGGCTCAGAGACACCCGTAACCGTTGGCCAGTCGGCTTTTACTTTTGTTTCATCACTGCTGGAGATTACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTa < 2:123022/251‑1 (MQ=255) gTTGGGATCGTTAAACAGATGCTTCGGCTCAGAGACAACCGTAACCGTTGGCCAGTCGGCTTTTACTTTTGTTTCATCACTGCTGGAGATTACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTAaaccaggaatttattatc < 1:176887‑M1/251‑19 (MQ=255) ttGGGATCGTTAAACAGACGCTTCGGCTCAGAGACAACCGTAACCGTTGGCCAGTCGGCTTTTACTTTTGTTTCATCACTGCTGGAGATTACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTAaaccaggaatttattatct > 2:54182‑M1/1‑232 (MQ=255) gATCGTTAAACAGATGCTTCGGCTCAGAGACAACCGTAACCGTTGGCCAGTCGGCTTTTACTTTTGTTTCATCACTGCTGGAGATTACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTAaaccaggaatttattatcttgtt > 1:129479‑M1/1‑228 (MQ=255) cGTTAAACAGATGCTTCGGCTCAGAGACAACCGTAACCGTTGGCCAGTCGGTTTTTACTTTTGTTTCATCACTGCTGGAGATTACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTAaaccaggaatttattagcttgttcg < 1:289477‑M1/250‑26 (MQ=255) aGATGCTTCGGCTCAGAGACAACCGTAACCGTTGGCCAGTCGGCTTTTACTTTTGTTTCATCACTGCTGGAGATTACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTAaaccaggaatttattatcttgttcgatgttgttg > 1:671‑M1/1‑217 (MQ=255) aTGCTGCGTCTCAGAGACAACCGTAACCGTTGGCCAGTCGGCTTTTACTTTTGTTTCATCACGGCTGTAGACTACCGCCAGTTCCTGCCCGGGCGCGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCTAACACGGATGTTGTCGCTCATGTCATTGCCTCTCACTGAAGTATGATGGCTATTTGACCCTAaaccaggaatttagtatcttgttcgatgttgttggt < 1:274787‑M1/251‑37 (MQ=255) gggcTCAGAGACACCCGTAACCGTTGGCCAGTCGGCTTTTACTTTTGTTTCATCACTGCTGGAGATTACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTAaaccaggaatttattatcttgttcgatgttgttggtgattgt < 1:33871‑M1/250‑43 (MQ=255) agagACAACCGTAACCGTTGGACAGTCGGCTTTTCCTTTTGTTTCATCACTGCTGGAGATTACCGCCAGTTCCTGCCCGGGCGTACCCGCAATCAGGGGCGCATGGCAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTAaaccaggaatttattatcttgttcgatgttgttggtgagtgtcaggg > 2:161384‑M1/1‑203 (MQ=255) gtTGGCCAGTCGGCTTTTACTTTTGTTTCATCACTGCTGGAGATTACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCTAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttac > 2:248882‑M1/1‑187 (MQ=255) cGGCTTTTGCTTTGTTTTCATCACTGCTGGTGATTTCCGCCAGTTCCTGCCCGGGCGTGCCCGCAAGCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggataggaaagcgcgttgctcttttcaga < 2:43536‑M1/251‑75 (MQ=255) gCTTTTACTTTTGTTTCCTCATCGTGGGAGATTTCCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGTGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTAGTTGACACTAaaccaggaatttattatcttgttcgatgttgttggtgtttgtcagggatagtaaagcgggttactcttttcagagc < 2:239976‑M1/251‑77 (MQ=255) ttCATCACTGCTGGAGATTACCGCCAGTTCCTGCCCGGGCGCGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccc < 2:117226‑M1/250‑90 (MQ=255) gagaTTACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttacgcttttcagagcagtttttcatccctgaatatttgccat < 1:54475‑M1/251‑104 (MQ=255) ccGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCAGTGAAGTATGATGGCTATTTGACACTAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgca < 2:297545‑M1/251‑111 (MQ=255) aGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattctt < 1:325788‑M1/251‑116 (MQ=255) cccGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgt < 1:20558‑M1/251‑124 (MQ=255) aGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcat > 2:353530‑M1/1‑109 (MQ=255) aGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcat < 1:353530‑M1/220‑112 (MQ=255) gggCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgtaataacacaagcgttcacttt < 1:4816‑M1/251‑145 (MQ=255) aaCCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTAaaccaggcatttattatcttgttcgatgttgttggtgattgtctgggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgccttcttattattgtaataacacaatcgttcacttttggtgaaattttatcatcactaata > 2:242058‑M1/1‑81 (MQ=255) aCCCAACACGGATGTTGTCGCTCATGACATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgtaataacacaagcgttcacttttggtgaaattttatcatcactaataatacctacccctttgg > 2:311289‑M1/1‑66 (MQ=255) tgtCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgtaataacacaagcgttcacttttggtgaaattttatcatcactaataatacctacccctttggtattaattattttat > 2:302704‑M1/1‑51 (MQ=255) cGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcatagcagtttttcatccctgaatatttgccatcagcgcattcttattattgtaataacacaagcgttcacttttggtgaaattttatcatcactaataatacttaccccgttggtattaatgattttatgg < 1:113890‑M1/250‑203 (MQ=255) gCCTCTCATTGAAGTATGATGGCTATTTGACACTAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgtaataacacaagcgttcacttttggtgaaattttatcatcactaataatacctacccctttggtattaattattttatggaccttttatgactg > 1:39499‑M1/1‑35 (MQ=255) tctcATTGAAGTATGATGGCTATTTGACACTAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgtaataacacaagcgttcacttttggtgaaattttatcatcactaataatacctacccctttggtattaattattttatggaccttttatgactgttc > 2:308639‑M1/1‑32 (MQ=255) tGAAGTATGATGGCTATTTGACACTAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgtaataacacaagcgttcacttttggtgaaattttatcatcactaataatacctacccctttggtattaattattttatggaccttttatgactgttcaggact > 1:125789‑M1/1‑26 (MQ=255) acacTAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgtaataacacaagcgttcacttttggtgaaattttatcatcactaataatacctacccctttggtattaattattttatggaccttttatgactgttcaggactacttattaaaatttcgcaa > 1:179832‑M1/1‑6 (MQ=255) | AATGACAATCAGGTCTATGTTGGGATCGTTAAACAGATGCTTCGGCTCAGAGACAACCGTAACCGTTGGCCAGTCGGCTTTTACTTTTGTTTCATCACTGCTGGAGATTACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTATCCTTTACCCACGCTCAACAGTTTAATAACCTGCCAGCAATAAGGGATGTTGTTTAACTTAAGTCAAAAAAATAGCGAATTTTCCAACGACAAAAGCTAAATATCGCAAAAACCTCAGTAAAAATCTTGCTGGAGCTATTATTGCTAAGTAACATTTACCCCCTGAAGTTAATGGATCAATCAAGAGAGATGTGGGCTGTAATGAATCGTCTTATTGAATTAACAGGTTGGATCGTTCTTGTCG > NC_000913/1704099‑1704593 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |