| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,914,523 | 0 | C | T | 21.4% | 138.5 / 11.8 | 71 | V226V (GTG→GTA) | glmU | fused N‑acetylglucosamine‑1‑phosphate uridyltransferase and glucosamine‑1‑phosphate acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (13/42); new base T (15/0); total (28/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.19e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CAATCATCGCCAATCACGCTGTTTTTAATCACGCAACCGGTGCCAATTTTCACGCGATGACCGAGAGTCACGTTGCCCTCGATGATAACGTTAGTATCAATTTCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCC‑TTCCTGATAC‑GCCAGCGCAATAATGTC‑GGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGACGCTGCTCGTCGGTGGCATCTTTGTGCTCAACAATGCCGGTAACTTTGCCGTTTTCAC > NC_000913/3914281‑3914770 | caaacatcGCCAAGCACGCTGGTTTTAAGCACGCAACCGGTGCCAATTTTCACGCGATGACCGAGAGTCACGTTGCCCTCGATGATAACGTTAGTATCAATTTCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTc < 2:522436/247‑1 (MQ=255) tcatcGCCAATCACGCTGTTTTTAATCACGCAACCGGTGCCAATTTTCACGCGATGACCGCGAGTCACGTTGCCCTCGATGATAACGTTAGTATCAATTTCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTTTTTAC‑GCCctctcc > 1:354079/1‑249 (MQ=255) ccAATCACGCTGTTTTTAATCACGCAACCGGTGCCAATTTTCACGCGATGACCGAGAGTCACGTTGCCCTCGATGATAACGTTAGTATCAATTTCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTTAC‑GCCCTCTTC‑TTTGCt > 1:310337/1‑251 (MQ=255) aaTCCCGCTTTTTTTAATCACGCAACCGGTGCCAATTTTCCCGCGATGACCTAGAGTCACGTTGCCCTCGATGATAACGTTAGTATCAATTTCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGTGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCTCTTa < 2:480828/251‑1 (MQ=255) cACGCTGTTTTTAATCACGCAACCGGTGCCAATTTTCACGCGATGACCGAGAGTCACGTTGCCCTCGATGATAACGTTAGTATCAATTTCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAA‑TTTGCTTaaa > 1:385702/1‑250 (MQ=255) aCGCTGTTTTTAATCACGCAACCGGTGCCAATTTTCACGCGATGACCGAGAGTCACGTTGCCCTCGATGATAACGTTAGTATCAATTTCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTTACCGCCT‑CTCC‑TTCGCtttaa > 1:556806/1‑246 (MQ=255) aCGCTGTTTTTAATCACGCAACCGGTGCCAATTTTCACGCGATGACCGAGAGTCACGTTGCCCTCGATGATAACGTTAGTATCAATTTCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAACg < 1:464414/251‑1 (MQ=255) aCGCTGTTTTTAATCACGCAACCGGTGCCAATTTTCACGCGATGACCGAGAGTCACGTTGCCCTCGATGATAACGTTAGTATCAATTTCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAACg < 1:304303/251‑1 (MQ=255) cTGTTTTTAATCACGCAACCGGTGCCAATTTTCACGCGATGACCGAGAGTCACGTTGCCCTCGATGATAACGTTAGTATCAATTTCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTTTTCAC‑GCCCTCTAC‑CTCgttttaacagtt > 2:39909/1‑240 (MQ=255) aaTCACGCAACCGGTGCCAATTTTCACGCGATGACCGAGAGTCACGTTGCCCTCGATGATAACGTTAGTATCAATTTCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGATGaa < 1:483433/251‑1 (MQ=255) cAACCGGTGCCAATTTTCACGCGATGACCGAGAGTCACGTTGCCCTCGATGATAACGTTAGTATCAATTTCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTTAC‑GCCTTCTAC‑TTTCCTTAAACGTTGCGGGTGGACGGcgac > 1:407355/1‑251 (MQ=255) cccgcgATGACCGAGAGTCACGTTGCCCTCGATGATAACGTTAGTATCAATTTCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCC‑TTCCt < 2:310337/249‑1 (MQ=255) cACGCGATGACCGAGAGTCACGTTGCCCTCGATGATAACGTTAGTATCAATTTCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTTTTTTC‑GCCCTCTAC‑TTTGCTTAAACATTGCGGGGGAAAGGCGGCGGTTTCACACCC‑TTCCt > 2:368063/1‑251 (MQ=255) cgATGACCGAGAGTCACGTTGCCCTCGATGATAACGTTAGTATCAATTTCAACATCGCCCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCTC‑TTCCTGATa < 1:177749/251‑1 (MQ=255) gagaGTCACGTTGCCCTCGATGATAACGTTAGTATCAATTTCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTTTTTAC‑GCCTTCTAC‑TTCCCTTAAACGGTGCGGATGAACGGCGACGATTTTACGCCC‑TTCCTGATAC‑GCCcgcg > 1:449952/1‑251 (MQ=255) gagaGTCACGTTGCCCTCGATGATAACGTTAGTATCAATTTCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCC‑TTCCTGATAC‑GCCAgcg < 1:351459/251‑1 (MQ=255) aCGTTGCCCTCGATTATAACGTTAGTATCAATTTCAACATCGCGCCCGTGAGTTATCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCC‑TTCCTGATAC‑GCCAGCGCaataat < 2:339792/251‑1 (MQ=255) tGCCCTCGATGATAACGTTAGTATCAATTTCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACTCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGATGAACTGCGACGATGTCACGCCC‑TTCCTGATAC‑GCCAGCGCAATAATGTc < 2:577574/250‑1 (MQ=255) gCCCTCGATGATAACGTTAGTATCAATTTCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGAGCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCC‑TTCCTGATTC‑GCCAGCGCAATAATGTC‑g < 2:308691/250‑1 (MQ=255) ccTCGATGATAACGTTAGTATCAATTTCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTTAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGATGAACGGCGACGATTTTACGCCC‑TTTCTGCTTC‑GCCAGCGCAATAATGTC‑GGTg > 1:58893/1‑251 (MQ=255) ccTCGATGATAACGTTAGTATCAATTTCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGATTTTTAC‑TACTTCTTC‑TTCGCTTAAAACTTGCGGATGAAAGGCCACCATTTTCCGCCC‑TTCCTgtttatccagacgaatcatgtcggtg > 1:528809/1‑226 (MQ=255) cTCGATGATAACGTTAGTATCAATTTCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTTAC‑GCCCTCTAC‑TTTGCTTAAACATTTCGGAGGAACGGCGGCGATTTTCCACCC‑TTCCTGATaacccacccccaatatgttggggg > 2:334070/1‑228 (MQ=255) gatgatAACGTTAGTACCAATTTCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCC‑TTCCTGATAC‑GCCAGCGCAATAATGTC‑GGTGATgt < 1:275036/251‑1 (MQ=255) atgatAACGTTATTATCAATTTCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCC‑TTCCTGATAC‑GCCAGCGCAATAATGTC‑GGTGATgta < 1:105393/251‑1 (MQ=255) atAACGTTAGTATCAATTTCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑CCCTTCTAC‑TTTGCTTAAACGTTTCGGGTGAACCGCGACGAATTCACCCCC‑TTCCTGCTAA‑CCCAGCGCACTAATGTA‑GGTGgtgtt > 1:569796/1‑247 (MQ=255) aaCGTTAGTATCAATTTCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCC‑GTCCTGATAC‑GCCAGCGCAATAATGTC‑GGTGATGTAGTAt < 1:457324/250‑1 (MQ=255) aaCGTTAGTATCAATTTCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAAAGTTGCGGGTGAAAGGGGACGATTTCACGCCC‑TTCCTGCAAC‑GCCAGCGCAATAATGTC‑GGGGAGGTAGAAtt > 1:40492/1‑251 (MQ=255) cGTTAGTATCAATTTCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTTAC‑GCCATCTAA‑TTCTCTTAAACGTTGTGGATTAAAGGCGGAGCATTCACGCCC‑TTCCTGTTAC‑GCCAGCGCTATAATGTC‑GGTGAGGTAGGAtttc > 1:54596/1‑249 (MQ=255) cGTTAGTATCAATTTCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGGTATTTCC‑TCCTTCTAC‑TTCCCTTCAACGTTTGGGGTGAAAAGCGACGATTTTACGCCC‑TTCCTGGTAA‑GCCCGAGGAATAATGTT‑GGGGATGTGATATTCg > 1:37628/1‑251 (MQ=255) cGTTAGTATCAAATTCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGAGCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGTCGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCC‑TTCCTGATAC‑GCCAGCGCAATAATGTC‑GGTGATGTAGTATTCg < 1:290210/251‑1 (MQ=255) cAATTTCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTTAC‑GCCTTCTTC‑TTCGCTTAAACGTTGCGGATGAACGGCGACGATTTTACGCCC‑TTCCTGATAC‑GCCAGCGCCATAATTTC‑GGTGGTGTAGTATTTGCCCTTAGcc > 1:52117/1‑250 (MQ=255) ttCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTGTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCC‑TTCCTGATAC‑GCCAGCGCAATAATGTC‑GGTGATGTAGTATTCGCCCTGAGCatta < 2:243550/250‑1 (MQ=255) tCAACATCGAGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCC‑TTCCTGATAC‑GCCAGCGCAATAATGTC‑GGTGATGTAGTATTCGCCCTGAGCattat < 2:291428/250‑1 (MQ=255) aCATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCC‑TTCCTGATAC‑GCCAGCGCAATAATGTC‑GGTGATGTAGTATTCGCCCTGAGCATTAttgtt < 1:37255/251‑1 (MQ=255) aTCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAAAGTTGCGGGAGAACGGGGACGATTTTACCCCC‑TTCCTGATAC‑GCCAGCGCCATAATGTCCGGGGTTG‑AGTATTCGCCCTgggcctttttttttg > 1:490363/1‑237 (MQ=255) gctcccGTGAGTTAGCGTACCCCGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACAGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAA‑TTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCC‑TTCCTGAGAC‑GCCAGCGCAATAATGTC‑GGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCa < 2:446798/248‑1 (MQ=255) cgtgatgtcgCGTACCACTCAGATGCAAACGCGCTGTATCGCGCAACATAACGCCTGCTAATAGCAGTTTTTCAGCCTGTTCGTACGTATAAACACGTTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTCATCGTTGCGGATGATCGGCGAAGATTTCACGCCC‑TTCCTGATAC‑TCCAGCTCAATAATGGC‑GGTGAGGTAGTATTCGCCCTTAGCATTATTGTTGGTCTGCTTc < 2:580274/242‑1 (MQ=255) gAGTTAGCGTACCTCGCAGATCAAAACGCGCTGGAGCTGGCAGCAGAACGCCTGCTAACAGCAGTTTGTCATCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGATGCAGGCGGTTAATAAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGATGAATGGCGACGATTTCACGCCC‑TTGCTGATAC‑GCCTGCGCAATAATGTC‑GGTGATGTAGCATTCGCCCTATGCATTAGTGTCGGTCAGCATCgcc < 2:35760/251‑1 (MQ=255) cccGCAGATCAAAACGCGCTGGATCTCGCAGCATAACGCCTTCTAACAGCAGGTGTGCAGCCTGTTCGGACTGATAAACACTCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCGTAAACGTTGCGGATGAACGGCGACTATTTCACGCCC‑TTCCTGATAC‑GCCAGCGCAATAATTTC‑GGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTc < 2:549777/249‑1 (MQ=255) cGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCC‑TTCCTGATAC‑GCCAGCGCAATAATGTC‑GGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCat < 2:174590/251‑1 (MQ=255) cAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCC‑TTCCTGATAC‑GCCAGCGCAATAATGTC‑GGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCatat < 1:334070/251‑1 (MQ=255) cAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCC‑TTCCTGATAC‑GCCAGCGCAATAATGTC‑GGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCatat < 2:505039/251‑1 (MQ=255) gcTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTTATAAACACGCTCCAGACGTGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCC‑TTCCTGATAC‑GCCAGCGCAAGAATGTC‑GGTGATGTAGTATTCGCCCTGATCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGc < 1:28601/251‑1 (MQ=255) gcTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCC‑TTCCTGATAC‑GCCAGCGCAATAATGTC‑GGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGc < 1:419366/251‑1 (MQ=255) aTCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCCCTTAAACGGTGCGGGTGAACGGCGACGATTTTACGCCC‑TTCCTGATAA‑GCCAGCGCAATAATGTC‑GGGGATGGAGTATTTGCCCCGAGCATTTTTTTTTGTCAGCTTCGCCCGCCAGCGGTTTATATCTTCGcccgttgccatcc > 1:258268/1‑240 (MQ=255) tgcctatcaTAACGCCTGCTACCAGCAGTTTTGCAGCCTGTTCGGACTTATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TACGTTTAAACGTTGCGGATGAACGGCGACGATTTCGCGCCC‑TTCCTGATAC‑GCCAGCGCAATAATGTC‑GGTGATGTAGTATTCGCCCGGAGCATTATTGTTGGTCAGCTTCGCCCTCCAGCGTTTCATATCTGCGCCGTTGGCAATCAg < 2:366165/243‑1 (MQ=255) gcagcaTAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTTAAAGTTGCGGATGGACGGCGACGATTTCACGCCC‑TTTCTGATAC‑GCCAGCGCAATAATGTC‑GGGGATGTAGTATTCGCCCCGAGCCTTATTGTTGGTGAGCTTTGCCCGCCAGCGTTTCATATTTGCGCCGGTTGCAATCAGAATg > 1:481641/1‑251 (MQ=255) agaaTAACGCCTGCTAACAGCAGTTTGTCAGCCTGTTCGGACTGATAAACCCGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑GTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCC‑TTCCTGATAC‑GCCATCGCAATAATGTC‑GGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGGCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGcc < 2:354079/248‑1 (MQ=255) tAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCC‑TTCCTGATAC‑GCCAGCGCaa < 1:144326/153‑1 (MQ=255) aaCGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCC‑TTCCTGATAC‑GCCAGCGCAATAATGTC‑GGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGgtg < 2:407355/250‑1 (MQ=255) aCGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCC‑TTCCTGATAC‑GCCAGCGCAATAATGTC‑GGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGtt < 1:134260/251‑1 (MQ=255) cGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCC‑TTCCTGATAC‑GCCAGCGCAATAATGTC‑GGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTg < 2:449952/251‑1 (MQ=255) gCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTTAC‑GCCCTCTTC‑TTCCCTTAAAAGTTGAGGGTGAACGGCGACGATTTCACGCCC‑CTCCTGGTAC‑GCCCGCGCCATAATGTA‑GGTGTGGTAGGTTTCGCCCCGAGCATTATTGTTGGTTCGCTTCGCCCGCCCGCGGTTTATTTCTGCGCCGGTGGCAATCAGAAtacaggggttgt > 1:249280/1‑240 (MQ=255) cTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCCTCTAC‑TTCGCTTGAACAGTGCGGATGAAAGGCGACGATTTCACGCCC‑CTACTGGTCCCGCC‑GCGCAATAATGAC‑GGTGGTGTAAAATTCGCCCCGGGCATTATTGTTTGTCAACTTCGCCACACCGCGATTCATATTTACGCCGCTGGCAATCAAAATGGCGGGGTTGAtc > 1:551462/1‑251 (MQ=255) cTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCCTCTAC‑TTCCCTTAAACGTTGCGGATGAAAGGCGAAGATTTTAAGCCC‑TTTCTGATAC‑ACCCACGCAATAAAGTC‑GGTAATGTAGGATTCGCCCTGGGCCTTATTGTTTGGCAGCTATGCCAGCCAGCGGTTCATATATTCCCCGGTGGGAATTAGAATCCCGGTGTTgttc > 1:353064/1‑248 (MQ=255) agcagTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAACGTGGCGGATGAACGGCGACGATTTCACGCCC‑TTCCTGATAC‑GCCAGCGCAATAATGTC‑GGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAAt < 2:58893/251‑1 (MQ=255) ttttCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCC‑TTCCTGATAC‑GCCAGCGCAATAATGTC‑GGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGAc < 1:198075/250‑1 (MQ=255) aGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTTAC‑CCCCTCTACCTTGCCTTAAAC‑TTTCAGAAGGACGGGGACGATTTAACCCCCCTTCC‑GGTAC‑GCCAGCGCAATAAATTC‑GGTGATGGAGGATTAGCCCAGCGCAATATTTTTTGTCAACTTCTCCCGCCCGCGTTTCCAATCTGCGCCGTTTGCAAACAGAAAGGCGGGGTTGGTCTCCttcattatagccctcc > 1:542287/1‑236 (MQ=255) gCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTTAC‑GCCTTCTAC‑TTCGCTTTAACGTTGCGGGTGAAAGGCGACGGTTTCACGCCC‑TTCCTGATAC‑GCCAGCGCAATAATGTC‑GGGGGTGTAGTATTTGCCCCGAGCCTTATTTTTTGTCAGCTTCGCCCGCCAGCGGTTCTTATCTTCGCCGTTTGCGAACAAAATGCCCGGGTTGATCTCCTGAATTTGACGCTGCtc > 1:553410/1‑251 (MQ=255) gCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTTC‑TTCGCTTTAAAGTTGCGGATGGACGGCGACGATTTCACGCCC‑TTCCTGATAC‑CCCCGCGCCATAATGTC‑GGGGATGTAGTATTCGCCCTTAGCATTATTTTTTGTCAACTTCGCCCGCCAGCGGTTCTTATCTGCGCCGTTGGCAATTAGAATACCGGGGTTGGTCTCCTTGATCTGGCGCTGCtc > 1:38341/1‑251 (MQ=255) tCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCC‑TTCCTGATAC‑GCCAGCGCAATAATGTC‑GGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGACGCTGCTCGTCgg < 2:52117/250‑1 (MQ=255) cccAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCC‑TTCCTGATAC‑GCCAGCGCAATAATGTC‑GGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGACGCTGCTCGTCGGTGGCATCTTTGTGCTcaac < 2:129923/250‑1 (MQ=255) ccAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCC‑TTCCTGATAC‑GCCAGCGCAATAATGTC‑GGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGACGCTGCTCGTCGGTGGCATCTTTGTGCTcaac < 1:368063/250‑1 (MQ=255) gACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCC‑TTCCTGATAC‑GCCAGCGCAATAATGTC‑GGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGACGCTGCTCGTCGGTGGCATCTTTGTGCTCAACAATg < 1:39909/251‑1 (MQ=255) tGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCC‑TTCCTGATAC‑GCCAGCGCAATAATGTC‑GGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGACGCTGCTCGTCGGTGGCATCTTTGTGCTCAACAATGCCGGTAACtt < 1:121672/250‑1 (MQ=255) gCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAACCGTTGCGGATGAACGGCGACGATTTCACGCCC‑TTCCTGATAC‑GCCAGCGCAATAATGTC‑GGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGACGCTGCTCGTCGGTGGCATCGTTGTGCTCATCAATGCCGGTAACTTTg < 2:376287/251‑1 (MQ=255) aGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCC‑TTCCTGATAC‑GCCAGCGCAATAATGTC‑GGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGACGCTGCTCGTCGGTGGCATCTTTGTGCTCAACAATGCCGGTAACTTTGcc > 1:82734/1‑251 (MQ=255) gCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCC‑TTCCTGATAC‑GCCAGCGCAATAATGTC‑GGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGACGCTGCTCGTCGGTGGCATCTTTGTGCTCAACAATGCCGGTAACTTTGCCGt < 1:548600/251‑1 (MQ=255) ggTTATTCAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCC‑TTCCTGATAC‑GCCAGCGCAATAATGTC‑GGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGACGCTGCTCGTCGGTGGCATCTTTGTGCTCAACAATGCCGGTAACTTTGCCGttt > 2:176540/1‑251 (MQ=255) tgtATTCAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGAGGAACGGCGACGATTTCACTCCC‑TTCCTGATAC‑GCCAGCGCAATAATGTC‑GGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGACGCTGCTCGTCGGTGGCATCTTTGTGCTCAACAATGCCGGTAACTTTGCCGttt < 2:474603/248‑1 (MQ=255) aTTCAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCC‑TTCCTGATAC‑GCCAGCGCAATAATGTC‑GGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGACGCTGCTCGTCGGTGGCATCTTTGTGCTCAACAATGCCGGTAACTTTGCCGTTTTCAc > 1:87940/1‑251 (MQ=255) | CAATCATCGCCAATCACGCTGTTTTTAATCACGCAACCGGTGCCAATTTTCACGCGATGACCGAGAGTCACGTTGCCCTCGATGATAACGTTAGTATCAATTTCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCAC‑GCCTTCTAC‑TTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCC‑TTCCTGATAC‑GCCAGCGCAATAATGTC‑GGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGACGCTGCTCGTCGGTGGCATCTTTGTGCTCAACAATGCCGGTAACTTTGCCGTTTTCAC > NC_000913/3914281‑3914770 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |