| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,393,679 | 0 | A | T | 24.0% | 96.7 / 10.2 | 50 | S860R (AGT→AGA) | yhdP | phospholipid transport factor YhdP |
| Reads supporting (aligned to +/- strand): ref base A (4/34); new base T (12/0); total (16/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.50e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GATTTCACGCCCTTGCGCTTCAACCAGGGTGCCATTTGCCGTCGGTTGCGAAACAATACTCAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGT‑ACGTAACGTTATGTGTTGTGGGAA‑A‑CTCGCTGCACCACCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCG‑TTTTACTGTCTGCCGCCCAAATAGCACGATCGAGCGTCAGCTTTT‑GACCGAGCAACCAGCGGCTATTGAAATGATTATCCGCACCAGCCTGT‑CCGGTTAATT‑CAAAGCTGTTGAGATTGCCATC‑AACCTTAACGTTTACCGCTAGTGGTTCACCCGCAGGTTTGGCTAA‑CGGTGAAGGTAAGTGACTGCTCACATTCTTTAGATCGCCGTTCAGCTCTATGTTATAGGTCGCACCAGCATGATA > NC_000913/3393430‑3393918 | gATTTCACGCCCTTGCGCTTCAACCAGGGTGCCATTTGCCGTCGGTTGCGAAACAATACTCAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGT‑ACGTAACGTTATGTGTTGGGGGAA‑A‑CTCGCTGCCCCACCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCG‑TTTTa < 2:235867/250‑1 (MQ=255) cAGGGTGCCATTTGCCGTCGGTTGCGAAACAATCCTCAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGT‑ACGTAACGTTATGGGTTGTGGGAA‑A‑CTCGCTGCACCACCGACACTCTCCGCAGCGCTTTTCGGGAACAGTGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCG‑TTTTACTGTCTGCCGCCCAAATAGCACGAt < 1:80554/251‑1 (MQ=255) gggTGCCATTTGCCGTCTGTTGCGAAACAATACTCAGGTTATTCCATTGCTGATTGCCCAGTGACAACATAGGCGT‑CCGTAACGTTATGGGTTGTGGGAA‑A‑CTCGCTGCACCACCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCG‑TTTTACTGTCTGCCGCCCAAATAGCACGATCg < 1:332826/251‑1 (MQ=255) gCCGTCGGTTGCGAAACAATACTCAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGT‑ACGTAACGTTATGTGTTGTGGGAA‑A‑CTCGCTGCACCACCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCG‑TTTTACTGTCTGCCGCCCAAATAGCACGATCGAGCGTCAGCtt < 1:404167/251‑1 (MQ=255) tCGGTTGCGAAACAATACTCAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGT‑ACGTAACGTTATGTGTTGTGGGAA‑A‑CTCGCTGCACCACCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCG‑TTTTTATTTCTGCCGCCCAAAAAACACGATCGAGCGGCAGCtttttt > 1:158425/1‑249 (MQ=255) ggTTGCGAACCAATACTCAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGT‑ACGTAACGTTATGTGTTGTGGGAA‑A‑CTCGCTGCACCACCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGGGCG‑GTTTACTGTATACCGCCCCAATAGGACGATCGAGCGGCAACTTTT‑gtcc > 1:574683/1‑248 (MQ=255) ggTTGCGAAACATTACTCAGGTTATTCCATTGCTGAGTTCCCTGTGACAACATAGGCGT‑ACGTAACGTTATGTGTTGTGGTAA‑T‑CCCTCTGGCCCACCGACCCTCTCCGCAGCGCCTTTCTGGTACAGGGCCAGCCACTCGGCGCCATTCATCGGCGGTATATTGAGTTCAACTCCCTTTTGTTCCGGCAACGGCGGGAGCG‑TTTTACTGTCTGCCGCCCAAATAGCACGATTGAGCGTCAGCTTTT‑GAcc < 1:215049/251‑1 (MQ=255) tGCGAAACAATACTCAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGT‑ACGTAACGTTATGTGTTGTGGGAA‑A‑CTCGCTGCACCACCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCG‑GTTTTCTTTCTTCCCCCCAAAAAGCACGATCGAGCGTCAGCGTTT‑GTCCgcg > 1:579286/1‑249 (MQ=255) aaaCAATACTCAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGT‑ACGTAACGTTATGTGTTGTGGGAA‑A‑CTCGCTGCACCACCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCG‑GTTTTCTGTCTGCCGCCCAAATAACACGAACGAGCGGCAGCGTTT‑TACCGCGCAAc > 1:246427/1‑251 (MQ=255) aCAATACTCAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGT‑ACGTAACGTTATGTGTTGTGGGAA‑A‑CTCGCTGCACCACCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCG‑TTTTACTGTCTGCCGCCCAAATAGCACGATCGAGCGTCAGCTTTT‑GACCGAGCAACCa < 1:182001/251‑1 (MQ=255) atccTCAGGTCATTCCAGTGCTGATTACCCAGTGACACCATAGGCTT‑CCTTACCGTTATTTGTTGTGGGAA‑T‑CTCGCGGCCCCCCCGACACTCCCCGCATCGCCTTTCGGGTACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCG‑TTTTACTGTCTGCCGCCCAAATAGCACGATCGAGCGTCAGCTTTT‑GACCGAGCAACCAGct < 2:297300/248‑2 (MQ=255) aTACTCAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGT‑ACGTAACGTTATGTGTGGTGGGAA‑A‑CTCGCTGCACCACCGACACTCTCCGCAGTGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCG‑TTTTACTGTCTGCCGCCCAAAGAGCACGATCGAGCGTCAGCTTTT‑GACCGAGCAACCAGCg < 1:501658/251‑1 (MQ=255) aCTCAGGTTATTCCATTGCGGATTCCCAAGTGACAACATAGGCGT‑ACGTAACTTTATGGGTGGGGGGAA‑A‑CCCGCTGCCCCCCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCG‑TTTTACTGTCTGCCGCCCAAATAGCACGATCGAGCGTCAGCTTTT‑GACCGAGCAACCAGCgg < 2:263318/250‑1 (MQ=255) aGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGT‑ACGTAACGTTATGTGTTGTGGGAA‑A‑CTCGCTGCACCACCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGGGCG‑TTTTTCTGCCTGCCCCCCCAACAGCACGCACGAGCGGCCGCTTTT‑GACCCAGCAACCACCgggcatt > 1:414818/1‑246 (MQ=255) tcctgtgtcgATTCCCCAGTGACAACATAG‑CGTTACGTACCTTTATGGGTTG‑GGGAACA‑CTCGCTTCACCACCGACACTCCCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCG‑TTTTACTGTCTGCCGCCCAAATAGCACGATCGAGCGTCAGCTTTT‑GACCGAGCAACCAGCGGCTATTGAAATg < 2:10545/241‑1 (MQ=255) cctttGCTGATTCCCAAGTGACAAAATAGGCGT‑ACGTACCGTTATGTGTGGGGGGAA‑A‑CTCCCCGCCCCCCCGCCACCCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCG‑TTTTACTGTCTGCCGCCCAAATAGCACGATCGAGCGTCAGCTTTT‑GACCGAGCAACCAGCGGCTATTGAAATGAt < 2:447490/248‑1 (MQ=255) tttcTGATTTCCCAGTGACAACATGGGCGT‑ACGTAACGTTATGTGTTGTGGGAA‑A‑CTCGCTGCACCACCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCG‑TTTTACTGTCTGCCGCCCAAATAGCACGATCGAGCGTCAGCTTTT‑GACCGAGCAACCAGCGGCTATTGAAATGAtt < 1:380163/246‑1 (MQ=255) gTGACAACATAGGCGT‑ACGTAACGTTATGTGTTGTGGGAA‑A‑CTCGCTGCACCACCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGGGGG‑GTTTTCTATCTGCCGCCCCAATAGCACGATCGCGCGTCAGCGTTT‑GAACGGGCAACCCACGGCCATTTAAATGAtttttccacccaacctgt > 2:62124/1‑235 (MQ=255) aaaaatgggtgtccgtaACTTTATGTGTGGGGGAAA‑A‑CCCTCTGCCCCCCCGACACGCCCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCG‑TTTTACTGTCTGCCGCCCAAATAGCACGATCGAGCGTCAGCTTTT‑GACCGAGCAACCAGCGGCTATTGAAATGATTATCCGCACCAGCCTGT‑CCgg < 2:545049/238‑1 (MQ=255) gtaacttgttgtgtgtgGGAA‑AACCCGCTCCACCACCGACACCCCCCGAAGCCCCTTTCTGGAACAGGTCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCG‑TTTTACTTTCTGCCGCCCAAATAGAACGATCGAGCGGCAGCTTTT‑GACCGAGCAACCATCGGCTATTGAAATGATTACCCGCACCAGCCTGT‑CCGGTTAATT‑CAAAGCTg < 2:290169/238‑1 (MQ=255) tgtgTTGTGGGAA‑A‑CTCGCTGCACCACCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGGGCG‑TTTTTCTGTCTGCCCCCCCCATAACACGATCGCGCGTCAGCTTTTTGAC‑GAGCAACCACCCGCTATTGTAATAATTATACGCCACAAACTGT‑CCGGGTAAAT‑CAAAAATGTTGTGAttt > 1:506394/1‑250 (MQ=255) gtgGGAA‑A‑CTCGCTGCACCACCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCG‑TTTTACTGTCTGCCGCCCAAATAGCACGATCGAGCGTCAGCTTTT‑GACCGAGCAACCAGCGGCTATTGAAATGATTATCCGCACCAGCCTGT‑CCGGTTAATT‑CAAAGCTGTTGAGATTGCCATC‑a < 1:574763/251‑1 (MQ=255) tgGGAA‑A‑CTCGCTGCACCACCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAACGGTTTTA‑TGTCTGCCGCCCCAATAACACGAACGGGCGGCCGCTTTTTGACC‑AGCCACCCGCGGCTATTTGAATGAATATACGCACCAACCTGTTCCGGTAAATC‑Caagacgttgttatttccctca > 1:525014/1‑231 (MQ=255) aacccgtgaccccaccGACACCCACCGCGGCGCCTTTATGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCG‑TTTTACTGTCTGCCGCCCAAATAGCACGATCGAGCGTCAGCTTTT‑GACCGAGCAACCAGCGGCTATTGAAATGATTATCCGCACCAGCCTGT‑CCGGTTAATT‑CAAAGCTGTTGAGATTGCCATC‑AACCTTa < 2:167713/240‑1 (MQ=255) tCGCTGCACCACCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGGGGG‑GTTTTCTGTCTGCCGCCCCAATAACACGATCGGGCGGCCGCTTTT‑TTCCGAGCAACCAGCGGCCATTGAAAAGATTATCCGCACCCGCCTGT‑CCGGGTAATT‑TAAAACTGTTTAGATTGCCATC‑AACCTTAACg > 1:133277/1‑251 (MQ=255) cGCTGCACCACCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGGGCG‑GTTTACTGTCTGCCGCCCCAAAAGCACGATCGAGCGTCCGCTTTT‑GAACGAGCAACCAGCGGCTATTGAAATGAATATTCGCACCCGACTGT‑CCGGTTAATT‑TAAAGCTGTTGTAATTTCCATC‑AAcccttaagt > 1:472457/1‑244 (MQ=255) tGCACGACCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGGG‑TTTTTCTGTCTGCCCCCCCAATAAAACGATCGGGCGGCCGCTTTT‑TACCGCGCAACCAACGGGTATTGCAAAGGTTATCCCCACCCGCCCGG‑CCGGGTTATT‑CACAGCATTTGGGATTGCCATC‑AACCTTAAAGtttt > 1:80578/1‑250 (MQ=255) tGCACCACCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCG‑TTTTTCTGTCTGCCGCCCCAAAAGCACGAGCCAGCGGCAGCCTTT‑TACCGAGCAAACCGCGGCCCTTGAAAAGATTATCCGCACCAGCCTTT‑CCCGTTTATT‑CAAAGCTGTTGAGAATTCCCCC‑AACCTTaaactttt > 1:133444/1‑245 (MQ=255) ccccccgacccccccccccgcgcCTTTCGGGACCAGGGCCGGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCG‑TTTTACTGTCTGCCGCCCAAATAGCACGATCGAGCGTCAGCTTTT‑GACCGAGCAACCAGCGGCTATTGAAATGATTATCCGCCCCAGCCTGT‑CCGGTTAATT‑CAAAGCTGTTGAGATTGCCATC‑AACCTTAACGTTTACCg < 2:169304/232‑1 (MQ=255) ccccccccaccgcctgtttgtaaCAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTTAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCG‑TTTTACTGTCTGCCGCCCAAATAGCCCGATCGAGCGTCAGCTTTT‑GACCGAGCAACCAGCGGCTATTGAAATGATTATCCGCACCAGCCTGT‑CCGGTTAATT‑CAAAGCTGTTGAGATTGCCATC‑AACCTTAACGTTTACCGCTAGTGGTTc < 2:480107/230‑1 (MQ=255) ccgacgccccTTTCTGGAACAGGGCCAGCCCCTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTCCCGGCAACGGCGGGAGCG‑TTTTACTGTCTGCCGCCCAAATAGCACGATCGAGCTTCAGCTTTT‑GACCGGGCAACCAGCGGCTATTGAAATGATTATCCGCACCAGCCTGT‑CCGGTTAATT‑CAAAGCTGTTGAGATTGCCATC‑AACCTTAACGTTTACCGCTAGTGGTTCAccc < 2:423131/243‑1 (MQ=255) ggcgcCTTTGGGGAACAGGGCCAGCTACTCGGCACCAGTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGGG‑TTGTACTGTCTGCCGCCCAAAAAGCACGATCGAGCGTCAGCTTTT‑GACCGAGCAACCAGCGGCTATTGAAATGAGTATCCGCACCAGCCTTT‑CCGGTGAATT‑CAAAGCTGTTGAGATTGCCATC‑AACCTTAAGGTTCACCGCTAGGGGTTCACCCGCAg < 2:549418/250‑1 (MQ=255) aGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCG‑TTTTTCTGTCTGCCGCCCAAATAACACGATCGAGCGGCAGCTTTT‑TACCGAGCCACCAGCGGCTATTGAAAAGATTATTCGCCCCAGCCTGT‑CCGGTTAATT‑TAAAGCTGTTGAGATTGCCCTT‑CACCTTAACGTTTATCGCTAGTgggttaccccc > 1:514406/1‑240 (MQ=255) ggAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCG‑TTTTACTGTCTGCCGCCCAAATAGCACGATCGAGCGTCAGCTTTT‑GACCGAGCAACCAGCGGCTATTGAAATGATTATCCGCACCAGCCTGT‑CCGGTTAATT‑CAAAGCTGTTGAGATTGCCATC‑AACCTTAACGTTTACCGCTAGTGGTTCACCCGCAGGTTTGGCTAA‑c < 1:10213/251‑1 (MQ=255) gAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCG‑TTTTTCTTTCCGCCGCCCCAATAGGACGGTCGAGCGTCAGCTTTT‑GTCCCCGCAACCAAACGCTATTGTAATGATTTTTCCCACCAACCTTT‑CCGGGTAATTTCAAA‑CTGTTTGGATTTCCATCCAACCT‑AACGTTTACCGCTAGTggattaaccaccgggttggctaacg > 1:291749/1‑228 (MQ=255) aaCAGGGCCAGCCACTCGGCACCAGTCATCGGCGGCATATTGAGTTCAACGCCACTTTGGTCCGGCAACGGCGGGAGCG‑TTTTACTGTCTGCCGCCCAAATAGCACGATCGAGCGTCAGCTTTT‑GACCGAGCAACCAGCGGCTATTGAAATGATTATCCGCACCAGCCTGT‑CCGGTTAATT‑CAAAGCTGTTGAGATTGCCATC‑AACCTTAACGTTTACCGCTAGTGGTTCACCCGCAGGTTTGGCTAA‑Cgg < 2:579286/251‑1 (MQ=255) gggCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCTCTTTGTTCCGGCAACGGCGGGAGCG‑TTTTACTGTCTGCCGCCCAAATAGCACGATCGAGCGTCAGCTTTT‑GACCGAGCAACCAGCGGCTATTGAAATGATTATCCGCACCAGCCTGT‑CCGGTTAATT‑CAAAGCTGTTGAGATTGCCATC‑AACCTTAACGTTTACCGCTAGTGGTTCACCCGCAGGTTTGGCTAA‑CGGTGaa < 1:105377/251‑1 (MQ=255) ccaCTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCG‑TTTTACTGTCTGCCGCCCAAATAGCACGATCGAGCGTCAGCTTTT‑GACCGAGCAACCAGCGGCTATTGAAATGATTATCCGCACCAGCCTGT‑CCGGTTAATT‑CAAAGCTGTTGAGATTGCCATC‑AACCTTAACGTTTACCGCTAGTGGTTCACCCGCAGGTTTGGCTAA‑CGGTGAAGGTAAGt < 1:122545/251‑1 (MQ=255) ggCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCG‑TTTTACTGTCTGCCGCCCAAATAGCACGATCGAGCGTCAGCTTTT‑GACCGAg < 2:273709/114‑1 (MQ=255) ccccATTCATCGGCGGCATATTGAGTTCAACGCCCCTTGGTTCCGGCAACGGCGGGAGCG‑TTTTACTGTCTGCCGCCCAAATAGCACGATCGAGCGTCAGCTTTT‑GACCGAGCAACCAGCGGCTATTGAAATGATTATCCGCACCAGCCTGT‑CCGGTTAATT‑CAAAGCTGTTGAGATTGCCATC‑AACCTTAACGTTTACCGCTAGTGGTTCACCCGCAGGTTTGGCTAA‑CGGTGAAGGTAAGTGACTGCTc < 2:432357/249‑1 (MQ=255) aTCGGGGGCATATTGAGTTCAACGCCACTTGGGTCCGGCCACGGCGGGAGCG‑TTTTACTGTCTGCCGCCCAAATAGCACGATCGAGCGTCAGCTTAT‑GACCGATCAACCAGCGGCTATTGAAATGAGTATCCGCACCATCCTGT‑CCGGTTAATT‑CAAAGCTGTTGAGATTGCCATC‑AACCTTAACGTTTACCGCTAGTGGTTCACCCGCAGGTTTGGCTAA‑CGGTGAAGGTAAGTGACTGCTCACATTCtt < 2:298709/251‑1 (MQ=255) tCGGCGGCATATTGAGTTCAACGCCTCTTTGTTCCGGCAACGGCGGGAGCT‑TTTTACTGTCTGCCGCCCAAATAGCACGATCGAGCGTCAGCTTTT‑GCCCGATCAACCAGCGGCTATTGAAATGATTATCCGCTCCAGCCTGT‑CCGGTTAATG‑CAAAGCTGTTGAGATTGCCATC‑AACCTTAACGGTTACCGCTAGTGGTTCACCCGCAGGTTTGGCTAA‑CGGTGAAGGTAAGTGACTGATCACATTCtt < 2:499106/250‑1 (MQ=255) ggcggcATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCG‑TTTTACTGTCTGCCGCCCAAATAGCACGATCGAGCGTCAGCTTTT‑GACCGAGCAACCAGCGGCTATTGAAATGATTATCCGCACCAGCCTGT‑CCGGTTAATT‑CAAAGCTGTTGAGATTGCCATC‑AACCTTAACGTTTACCGCTAGTGGTTCACCCGCAGGTTTGGCTAA‑CGGTGAAGGTAAGTGACTGCTCACATTCTTTAg < 1:428435/251‑1 (MQ=255) gcATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCG‑TTTTACTGTCTGCCGCCCAAATAGCACGATCGAGCGTCAGCTTTT‑GACCGAGCAACCAGCGGCTATTGAAATGATTATCCGCACCAGCCTGT‑CCGGTTAATT‑CAAAGCTGTTGAGATTGCCATC‑AACCTTAACGTTTACCGCTAGTGGTTCACCCGCAGGTTTGGCTAA‑CGGTGAAGGTAAGTGACTGCTCACATTCTTTAGATCg < 1:239565/251‑1 (MQ=255) tatTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGGGAG‑TTTTAATGTCTGCCCCCCAAATAGCACGATCGGGCGGCAGCTTTT‑TACCCGGCAACCCACGGCCATTTAAATGATTATCCCCCCCCGCCCGT‑CCGGGTAATT‑CAAAACTGTTTAGAATGCCATC‑AAACTTAACGTTTACCGCCAGTGGGTTACCCGCCGGTTTGGATAAACGG‑GGAGGTAAGTGAATGCTCCCATTCTTTAGATTGccc > 1:200678/1‑250 (MQ=255) cAACGCCACTTTGTTCCGGCAACGGCGGGGGCG‑TTTTTCTGTCTGCCGCCCAAAAAGCACGATCGAGCGTCCGCTTTT‑TACCGGGCAACCAGCGGCTATTTAAATGATTTTCCCCACCAGCCCGT‑CCGGTTTATT‑CAAAGCTGTTTAGATTTCCATC‑AACCTTAACGTTTACCGCTAGTGGGTTACCCGCCGGGTTTGCTTA‑CCGGGAAGGTAAGGGACTGCTcacaagaacgggagagcacacctctga > 1:410315/1‑227 (MQ=255) cAACGCCACTTTGTTCCGGCAACGGCGGGAGCG‑TTTTACTGTCTGCCGCCCAAATAGCACGATCGAGCGTCAGCTTTT‑GACCGAGCAACCAGCGGCTATTGAAATGATTATCCGCACCAGCCTGT‑CCGGTTAATT‑CAAAGCTGTTGAGATTGCCATC‑AACCTTAACGTTTACCGCTAGTGGTTCACCCGCAGGTTTGGCTAA‑CGGTGAAGGTAAGTGACTGCTcaca < 2:410315/227‑1 (MQ=255) cGGCAACGGCGGGAGCG‑TTTTACTGTCTGCCGCCCAAATAGCACGATCGAGCGTCAGCTTTT‑GACCGAGCAACCAGCGGCTATTGAAATGATTATCCGCACCAGCCTGT‑CCGGTTAATT‑CAAAGCTGTTGAGATTGCCATC‑AACCTTAACGTTTACCGCTAGTgg < 1:74818/165‑1 (MQ=255) ggggAGCG‑TTTTACTGTCCGCCGCCCAAATAGCACGATCGGGCGTCAGCTGTT‑GACCGAGCAACCAGGGGCTATTGAAATGATTATCCGCACCAGCCTGT‑CCGGTTAAAT‑CAAAGCTGTTGAGATTGCCATC‑AACCTTAACGTTTACCGCTAGTGGTTCACCCGCAGGTTTGGCTAA‑CGGTGAAGGTAAGTGACTGCTCACATTCTTTAGATCGCCGTTCAGCTCTATGTTATAGGTCGCACCAGCATGAt < 2:158425/250‑1 (MQ=255) gggAGCG‑TTTTATGGTCTGCCGCCCAAATAGCCCGATCGAGCGTCAACTTTT‑GACCGAGCAACCATCGGCTATTGAAATGATTATCCGCACCAGCCTGT‑CCGGTTAATT‑CAAAGCTGTTGAGATTGCCATC‑AACCTTAACGTTTACCGCTAGTGGTTCACCCGCAGGTTTGGCTAA‑CGGTGAAGGTAAGTGACTGCTCACATTCTTTAGATCGCCGTTCAGCTCTATGTTATAGGTCGCACCAGCATGATa < 1:378740/251‑1 (MQ=255) gggAGCG‑TTTTACTGTCTGCCGCCCAAATAGCACGATCGAGCGTCAGCTTTT‑GACCGAGCAACCAGCGGCTATTGAAATGATTATCCGCACCAGCCTGT‑CCGGTTAATT‑CAAAGCTGTTGAGATTGCCATC‑AACCTTAACGTTTACCGCTAGTGGTTCACCCGCAGGTTTGGCTAA‑CGGTGAAGGTAAGTGACTGCTCACATTCTTTAGATCGCCGTTCAGCTCTATGTTATAGGTCGCACCAGCATGATa < 1:395775/251‑1 (MQ=255) | GATTTCACGCCCTTGCGCTTCAACCAGGGTGCCATTTGCCGTCGGTTGCGAAACAATACTCAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGT‑ACGTAACGTTATGTGTTGTGGGAA‑A‑CTCGCTGCACCACCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCG‑TTTTACTGTCTGCCGCCCAAATAGCACGATCGAGCGTCAGCTTTT‑GACCGAGCAACCAGCGGCTATTGAAATGATTATCCGCACCAGCCTGT‑CCGGTTAATT‑CAAAGCTGTTGAGATTGCCATC‑AACCTTAACGTTTACCGCTAGTGGTTCACCCGCAGGTTTGGCTAA‑CGGTGAAGGTAAGTGACTGCTCACATTCTTTAGATCGCCGTTCAGCTCTATGTTATAGGTCGCACCAGCATGATA > NC_000913/3393430‑3393918 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |