| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 300,120 | 0 | C | G | 26.8% | 94.6 / 12.7 | 57 | R272P (CGC→CCC) | paoC | aldehyde dehydrogenase: molybdenum cofactor‑binding subunit |
| Reads supporting (aligned to +/- strand): ref base C (20/21); new base G (1/14); total (21/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.46e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACC‑GCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTG‑AGATAGCGGTGATTTTCCCGCTCTGGT‑CGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAGC‑ATCACTT‑TAACCGGACG‑TTTCACCGCTCGGGCGGCG‑AGGGCCGCCAGCAGCGCAT‑CGCTTC‑TCAGGAACAGCTTGCCGCC‑AAACCCTCCGCCGATATACGGGGAGATAATACGCACATTCTCCACGGGAACTTTCAGCGTTTTTGCCAGATCGGTGCGGCACCAGTCAATCATCTGATTTGAGGTCCAGAGGGTAAGCTTATTTCCATCCCAGACGGCCATCGAGGCATGCGGCTCCAT > NC_000913/299875‑300367 | cGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACC‑GCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTG‑AGATAGCGGTGATTTTCCCGCTCTGGT‑CGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCggggg > 1:287729/1‑251 (MQ=255) cGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACC‑GCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTG‑AGATAGCGGTGATTTTCCCGCTCTGGT‑CGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCgggggggc > 1:31564/1‑248 (MQ=255) gcacgcaTGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACC‑GCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTG‑AGATAGCGGTGATTTTCCCGCTCTGGT‑CGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGGGCGTGGGGTTATTGGGGATAGAGGGGCggggggggctccc > 2:170947/1‑243 (MQ=255) cgtctggccggtccctcccGGCAAACCAGGCGTGGCGGGCCGCAGGCCGGTATGACGATCCCCCCGGGCTAAGGGAATTTCGTTTTGCTGTCCC‑GCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTG‑AGATAGCGGTGATTTTCCCGCTCTGGT‑CGGCCCCGATACGCAAGTGCTGAAGGGGGGCGGGGCGGTGCGTGTTGTTATTGGGAATAGAGGGGCGGGGGAGC‑ATCACtt < 1:226836/240‑1 (MQ=255) aaTCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACC‑GCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTG‑AGATAGCGGTGATTTTCCCGCTCTGGT‑CGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGGGC‑AACCCTT‑TAACCCGGCG‑GTTCACCGCCCgg > 1:430179/1‑251 (MQ=255) accagggggggCGAGCCGATGTCCGGTATGACGATCCGCCCGGGCGTAGAGTAATTCGTTTTGCTGTCCC‑GCCGTTCCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTG‑AGATAGCGGTGATTTTCCCGCTCTGGT‑CGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAGC‑ATCACTT‑TAACCGGACG‑TTTCACCGCTCggg < 1:419752/242‑1 (MQ=255) ggggggAGCCGCAGGCGGGTTGGACGATCCCCCCGGGCGTAGATTAATTCGCTTTGCTGTCCC‑GCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTG‑AGATAGCGGTGATTTTCCCGCTCTGGT‑CGGCACCGAAACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAGC‑ATCACTT‑TAACCGGACG‑TTTCACCGCTCGGGCGGCG‑Ag < 1:557691/246‑1 (MQ=255) ggggAGCCGCGGGCGGGTTGGACGATGCGCCCCGGTGTAGAGTAATCCGCTGTGCTGAACC‑GCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTG‑AGATAGCGGTGATTTTCCCGCTCGGGT‑CGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAGC‑ATCACTT‑TAACCGGACG‑TTTCACCGCTCGGGCGGCG‑Aggg < 1:210403/248‑1 (MQ=255) cGAGCCGAAGGCGGTTATGCCGTTTCGCCCCGGCGTAGAGTAATTCGTTTTGTTGTCCC‑GCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTG‑AGATAGCGGTGATTTTCCCGCTCTGGT‑CGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAGC‑ATCACTT‑TAACCGGACG‑TTTCACCGCTCGGGCGGCG‑AGGgcc < 1:567199/251‑1 (MQ=255) gtgtatgaggttgccccccGGCGTAGAGTAATTGTCTTTCCTTGCCC‑GCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTG‑AGATAGCGGTGATTTTCCCGCTCTGGT‑CGTCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAGC‑ATCACTT‑TAACCGGACG‑TTTCACCGCTCGGGCGGCG‑AGGGCCGCCAGCAGCGCa < 1:333490/236‑1 (MQ=255) ttggACGATCCGCCCCGGGGTGTATTAATTGGCTTTGCTTTCCC‑GCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGCCCGGCTTTCATGTG‑AGATAGCGGTGATTTTCCCGCTC‑GGTGCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAGC‑ATCACTT‑TAACCGGACG‑TTTCACCGCTCGGGCGGCG‑AGGGCCGCCAGCAGCGCAT‑c < 1:564160/247‑1 (MQ=255) tATGACGACCCGCCCGGGTGTAGAGTAATTCGCTTGTCGGTACC‑GCCGTTGCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATTTG‑AGATAGCGGTGATTTCCCCGCTCTGGT‑CGGCACCGATCCGCAAGTGCTGAAGGGTGGCGGGGTGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAGC‑ATCACTT‑TAACCGGACG‑TTTCACCGCTCGGGCGGCG‑AGGGCCGCCAGCAGCGCAT‑c < 1:531955/250‑1 (MQ=255) ccccccGGCGTATAGTAATTCGTTTTGCTTTACC‑GCCGTTTCCGGCGTGCCGCCGGGCAGTTTTCCAGACCAGCTTTCATGTG‑AGATAGCGGTGATTTTCCCGCTCTGGT‑CGGCACCGTTACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAGC‑ATCACTT‑TAACCGGACG‑TTTCACCGCTCGGGCGGCG‑AGGGCCGCCAGCAGCGCAT‑CGCTTC‑TCAGGa < 1:108600/249‑1 (MQ=255) cgggggtgggttAATTCGTTTTCCTGTCCC‑GCCGTTTCCGGCGTGCCGCCGGGCAGGTTCCCAGACCAGCTTTCATGTG‑AGATAGCGGTGATTTTCCCGCTCTGGT‑CGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAGC‑ATCACTT‑TAACCGGACG‑TTTCACCGCTCGGGCGGCG‑AGGGCCGCCAGCAGCGCAT‑CGCTTC‑TCAGGAACAg < 1:550472/240‑1 (MQ=255) ccgggtggggataattccgtttGCCGTACCCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTG‑AGATAGCGGTGATTTTCCCGCTCGGGT‑CGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAGC‑ATCACTT‑TAACCGGACG‑TTTCACCGCTCGGGCGGCG‑AGGGCCGCCAGCAGCGCAT‑CGCTTC‑TCAGGAACa < 2:235588/232‑1 (MQ=255) aagagagatccgcgttGCTGTACC‑GCCGTTTCTGGGGTGCCGCCGGTTAGGTTTCCATCCCAGATTACTTGGG‑AGAGAGCGGTGTTTTTCCCGCCCTGGT‑CTGCGCCGATACGCAAGTGAGGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAAGAGAGGGGCGGGGGAGC‑ATCACTT‑GAACCGGACG‑TATCACCGCTCGGGCGGCG‑AGGGCCGCCAGCAGCGCAT‑CGCTTC‑TCAGGAACAGCTTgcc < 1:560933/237‑1 (MQ=255) gTAATTCGCTTTGCTGTACC‑GCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTG‑AGATAGCGGTGATTTTCCCGCTCTGGT‑CGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGGGG‑AGCAATT‑TAAACGGACG‑TTTTACCCCCCGGGCGGGG‑GGGGGCGCCAGCCGCGCCT‑CGCCTC‑TCCGGaaacgccttcccccc > 1:226140/1‑238 (MQ=255) aTTCGCTTTGCTGTACC‑GCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTG‑AGATAGCGGTGATTTTCCCGCTCTGGT‑CGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGCATAGAGGGGCGGGGGGGG‑ATCACTT‑TAACCCGAAG‑TTTCACCGCTCGGGGTGCG‑AGGGCCGCCAGCAGCGCAA‑CACTTC‑CCAAGAACAGCTTGCCGCC‑AAAc > 1:325483/1‑251 (MQ=255) ggtccctgcgTTTCCGGCGGTCCCCGGGGGAGGTTTCCAGACCCGTTTTAATGTGGAGA‑AGGGGTTTTTTTCCCCCTTGGGT‑CGGCCCCAATACCGAAGGGTTGAGGGGGGGGGGGGGGGTGGGTGGTGTTATTGGGAATAGGGGGGGGGGGGAGC‑ATCATTT‑TAACCGGACG‑TTTCACCGCTCGGGCGGCG‑AGGGCCGCCAGCAGCGCAT‑CGCTTC‑TAAGGAACAGCTTGCCGCC‑AAACCCTCCGCCGat < 1:270689/243‑1 (MQ=255) cccc‑gccgTTTCCGGCGTGCCGCCGGGCGGGTTTCCAGACCAGTTTTCATGTG‑AGATAGCGGTGTTTTCCCCGCTCTGGT‑CGGCCCCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTTTTGGGAATAGAGGGGCGGGGGAGC‑ATCACTT‑TAACCGGACG‑TTTCACCGCTCGGGCGGCG‑AGGGCCGCCAGCAGCGCAT‑CGCTTC‑TCAGGAACAGCTTGCCGCC‑AAACCCTCCGCCGata < 1:89711/248‑1 (MQ=255) cgccgttccgggggggccgcgGGGCAGGTTCCCAGCCCAGTTTTCATGTG‑AGAGAGCGGGGATTTTCCCGCTCGGGT‑CGGCACCGATACGAAGGTGCTGAGGGGGGGCGGGGGGGGGCGGGGTGTTATGGGGAATAGAGGGGGGGGGGAGC‑ATCCCTT‑TAACCGGACG‑TTTCACCGCTCGGGCGGCG‑AGGGCCGCCAGCAGCGCAT‑CGCTTC‑TCAGGAACAGCTTGCCGCC‑AAACCCTCCGCCGATATACg < 2:287729/236‑1 (MQ=255) gggttgcggcggGCGGCCGGGAGGGTTTCAAGACCAGCTTCAAGGGG‑AGATAGCGGGGATTTTCCGGTTGGGGT‑CGGCCCGGAGCCGCAAGGGCGGAAGGGGGGGGGGGGGGGGCGGGGTGTGATTGGGAAAAGAGGGGGGGGGGAGC‑ATCACTT‑TAACCGGACG‑TTGCCCCGCTCGGGCGGCG‑AGGGCCGCCAGCAGCGCAT‑CGCTTC‑TCAGGAACAGCTTGCCGCC‑AAACCATCCGCCGATATACgggg < 1:478651/245‑1 (MQ=255) gTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTG‑AGATAGCGGTGATTTTCCCGCTCTGGT‑CGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAGC‑ATTACTT‑TAAACGGGCG‑TTTCAACGCCCGGGCGGCG‑AAGGCCGCCAGCAGCGCAT‑CGCTTC‑TCAGGAACAACTTGCCGCC‑AAACCCTCCGCCGGTATACGGGGAGgtaata > 1:163494/1‑249 (MQ=255) cgccgGGCAGGTTTCCAGACCAGCTTTCATGTG‑AGATAGCGGTGATTTTCCCGCTCTGGT‑CGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGGGC‑ATCACTT‑TAACCGGACG‑GTTCCCCGCCCGGGCGGCG‑GGGGGCGCCCGCAGCGCAT‑CGCTTT‑TCAGGAACCGGTTGGCGCCCAAACCC‑CCGCCGATATACGGGGAGATAATACGccc > 1:152964/1‑248 (MQ=255) cgGGCAGGTTTCCAGACCAGCTTTCATGTG‑AGATAGCGGTGATTTTCCCGCTCTGGT‑CGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGGGGGGGAGG‑AGCACGT‑TTACCGGGCGGTTTCACC‑CACGGGCGGCG‑GGGGCCGCCCACCGCGCCT‑CGCTTCCTC‑GGGACAGCCTGGCGCC‑ACACCCCCCGCCGCAATACGCGGGGataaaaagccccatt > 2:313963/1‑240 (MQ=255) gggCAGGTTTCCAGACCAGCTTTCATGTG‑AGATAGCGGTGATTTTCCCGCTCTGGT‑CGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAGG‑ATCACTT‑TTAACGGACG‑GTTCACCGCCCGGGCGGCG‑AGGGGCGCCCGCAGCGCAA‑CGCCTT‑TCAGGGAAAGCTTTCCGCC‑CAAACCTCCGCCGGTATACGGGGGGGAAATACGCACAtttt > 1:400770/1‑249 (MQ=255) ggTTTCCAGACCAGCTTTCATGTG‑AGATAGCGGTGATTTTCCCGCTCTGGT‑CGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAGC‑AACACTT‑TAACCGGACG‑TTTCACCGCTCGGGCGGCG‑AGGGCCGCCAGCACCGCAT‑CGCTTC‑TCAGGAACCGCTTTCCGCC‑CAAACCTCCGCCGATATACGGGGAGATAATACGCACATtccccccg > 1:453986/1‑245 (MQ=255) ccAGACCAGCTTTCATGTG‑AGATAGCGGTGATTTTCCCGTTCTGGT‑CGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAGC‑ATCACTT‑TAACCGGACG‑TTTCACCGCTCGGGCGGCG‑AGGGCCGCCAGCAGCGCAT‑CGCTTC‑TCAGGAACAGCTTGCCGCC‑AAACCCTCCGCCGATATACGGGGAGATAATACGCACATTCTCCACGGGaa < 1:357725/250‑1 (MQ=255) cAGACCAGTTTGCAGGGG‑AGATAGGGGTGATTTTCCCGCTCTGGT‑CGGCACCGATACGAAAGTGCTGAGGGGTGGGGGGGGGGTGGGTGGTGTTATTGGGAAAAGAGGGGGGGGGGAGC‑ATCACTT‑TAACCGGACG‑TTTCACCGCTCGGGCGGCG‑AGGGCCGCCAGCAGCGCAT‑CGCTTC‑TCAGGAACAGCTTGCCGCC‑AAACCCTCCGCCGATATACGGGGAGATAATACGCACATTCTCCACGGGAACt < 1:106939/251‑1 (MQ=255) gACCAGCTTTCATGTG‑AGATAGCGGTGATTTTCCCGCTCTGGT‑CGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAGC‑ATCACTT‑TAACCGGACG‑TTTCACCGCTCGGGCGGCG‑AGGgccgcc < 2:23229/162‑1 (MQ=255) tgtg‑AGATAGCGGTGATTTTCCCGCTCTGGT‑CGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGCATAGAGGGGCGGGGGGGC‑GTCACTT‑TAACCAGACG‑TGTCCACGCGCGGGGGGCGCGGGGCCACC‑GCACCGCCA‑CGCTTC‑TCACGAACAGCTTTCCGCC‑ACACCCCCCCCCCATATTAGGGGGGATAATACGCCAATTTTCCCCAGGAACATTCAGCGgtttttc > 2:439723/1‑249 (MQ=255) ggaggaaggggggATTTCCCCGCTCGGGT‑GGGCACGGATACGAAAGGGTGGAGGGGGGGGGGGGCGGGGGGTGGGGTTATGGGGAATAGGGGGGCGGGGGAGC‑ATCACTT‑TAACCGGACG‑TTCCACCGCTCGGGCGGCG‑AGGGCCGCCAGCAGCGCAT‑CGCTTC‑TCAGGAACAGCTTGCCGCC‑AACCCCTCCGCCGATATACGGGGAGATAATACGCACATTCTCCACGGGAACTTTCAGCGTTTTTGCCa < 2:193797/239‑1 (MQ=255) tttCCCGCTCTGGT‑CGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAGC‑ATCACTT‑TTACCGGGCG‑TTTCACCGCTCGGGCGGCG‑AGGGCCGCCAGCAGCGCCT‑CGCTTC‑TCAGGAACAGCTTGCCGCC‑CAACCCTCCGCCGGTATACGGGGGGATAATACGCACATTCCCCACGGGAACTTTTCGCGGTTTTTCCAGATCGGTGCGGCAcc > 1:330109/1‑251 (MQ=255) gCTCTGGT‑CGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGGGC‑GTCCCTT‑TTAACGGACG‑TTTCACCGCCCGGGCGGCG‑GCGGCCGCCAGCCGCGCAT‑CCCTTC‑TCACGGACAACTTGCCGCC‑CAACCCCCCGCCGATATACGGGGGGGTAATCCCCCCATTCTCCCCCGGAACTTTCCGCGTTTTTTCCCGATctgttcgggacccatca > 1:43721/1‑234 (MQ=255) ggT‑CGGCACCGATACGGAAGTGCTGAAGGGTGGTGGGGTGGTGGGTGTGGTTATGGGGAATAGAGGGGCGGGGGAGC‑ATCCCGT‑TAACCGGACG‑TTTCACCGCTCGGGCGGCG‑AGGGCCGCCGGCAGCGCAT‑CGGTTC‑TCAGGAACAGCTTGCCGCC‑AAACCCTCCGCCGATATACGGGGAGATAATACGCACATTCTCCACGGGAACTTTCAGCGTTTTTGCCAGATCGGTGCGGCACCAGTCAatcat < 1:381220/250‑1 (MQ=255) gctccGATACGAAAGTGCGGAGGGGGGGCGGGGGGTTGCGGGTTGGTTTGGGGAATAGGGGGGGGGGGGACC‑ACCACTT‑GAACCGAGCG‑TTGCACCGCTCGGGCGGCG‑AGGGCCGCCAGAAGCGCAT‑CGCTTC‑TCAGGAACAGCTGGCCGCC‑AAACCCTCCGCCGATATACGGGGAGATAATACGCACAGTCTCCACGGGAACTTTCAGCGGTTTTGCCAGATCGGTGCGGCACCAGTCAAACATCTGAtt < 2:36436/248‑1 (MQ=255) tACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGGGTTATTGGGAATAGAGGGGCGGGGGAGC‑ATCACTT‑TAACCGGACG‑GTTCACCGCTCGGGCCGCG‑AGGGCCGCCAGCAGCGCAT‑CGCTTC‑TCAGGAAAAGCTTTGCGCC‑AAACCCTCCCCCGATATACCGGGAGATAATACGCCCATTCTCCACCGGAACTTTCAGCGTTTTTGACAGATCGGTGCGGCACCAGTCCATCATCTgggtttaggtc > 1:25309/1‑241 (MQ=255) aCGCAAGTGCTGAAGGGTGGCGGGGCGGGGCGTGGTGTTATTGGGAAGAGGGGGGGGGGGGAGC‑ATCACTT‑TAACCGGACG‑TTTCACCGCTCGGGCGGCG‑AGGGCCGCCAGCAGCGCAT‑CGCTTC‑TCAGGAACAGCTTGCCGCC‑AAACCCTCCGCCGATATACGGGGAGATAATACGCACATTCTCCACGGGAACTTTCAGCGTTTTTGCCAGATCGGTGCGGCACCAGTCAATCATCTGATTTGAGGTc < 1:184878/250‑1 (MQ=255) cAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAGC‑CTCACTT‑TTACCGGGCG‑TTTCACCTCTCCGGGGGCG‑AGGGGCGCCAGCAGCGCCA‑CGATTC‑TCAAGAACAGCATGCCGCC‑CAACCCTCCGCCGGTATACGGGGACATAATACTCCCCATCTCCCCGGTAACCTTTATCGGTTTTGCCCGCTCGGTTCGGCGCCCGTCACTCATCTGATTTTAGGTcc > 1:389412/1‑248 (MQ=255) aggggcggtgggggggcgggtgggggCGTGGTTTTTTTGGGAATGGGGGGGGGGGGGGGC‑ATCCCTT‑TACCCGGACG‑TTCCACCGCTCGGGCGGCG‑AGGGCCGCCAGCAGCGCAT‑CGCTTC‑TCAGGAACAGCTGGCCGCC‑AAACCCTCCGCCGATATACGGGGAGATAATACGCACATTCTCCACGGGAACTTTCAGCGTTTTTGCCAGATCGGTGCGGCACCAGTCAATCATCTGATTTGAGGTCCagag < 2:506283/226‑1 (MQ=255) ggggggggggggggTGCGTGGTGTTATTGGAAAGAGGGGGGGGGGGGAGC‑ATCACTT‑TACCCGGACG‑TTTCACCGCCCGGGCGGCG‑AGGGCCGCCAGCAGCGCAT‑CGCTCC‑TCAGGAACAGCTTGCCGCC‑AAACCCTCCGCCGATATACGGGGAGATAATACGCACATTCTCCACGGGAACTTTCAGCGTTTTTGCCAGATCGGTGCGGCACCAGTCAATCATCTGATTTGAGGTCCAGAGGGTAAGCTTa < 2:152964/244‑1 (MQ=255) gggTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGGGC‑ATCACTT‑TAACCGGGCG‑TTTTACCGCTCGGGCGGCG‑AGGGCCGCCCGCCGCGCAT‑CGCCTC‑TCAGGAACAGCTTGCCGCC‑AAACCCCCCGCCGGTATACGGGGGGGTAATACACACATTCTCCCCGGGGAATTTTAGCGTTTTTTCCAGGACGGTGCGGGACCAGTCAATCCTCTTGTTTTAGGTCCCGAggggacgcttt > 2:524462/1‑243 (MQ=255) gggggggggTGGGTGGGGTTGTTGGGAAGGGGGGGGGGGGGGAGC‑ACCCCTT‑AACCCGGACG‑TTTCCCCGCTCGGGCGGCG‑AGGGCCGCCAGCAGCGCAT‑CGCTTC‑TCAGGAACAGCTTGCCGCC‑AACCCCTCCGCCGATATACGGGGAGATAATACGCACATTCTCCACGGGAACTTTCAGCGTTTTTGCCAGATCGGTGCGGCACCAGTCAATCATCTGATTTGAGGTCCAGAGGGTAAGCTTATTTcc < 2:330109/249‑1 (MQ=255) gcgggggggGGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAGC‑ATCACTT‑TAACCGGACG‑TTTCACCGCTCGGGCGGCG‑AGGGCCGCCAGCAGCGCAT‑CGCTTC‑TCAGGAACAGCTTGCCGCC‑AAACCCTCCGCCGATATACGGGGAGATAATACGCACATTCTCCACGGGAACTTTCAGCGTTTTTGCCAGATCGGTGCGGCACCAGTCAATCATCTGATTTGAGGTCCAGAGGGTAAGCTTATTTcc < 1:170947/251‑1 (MQ=255) cggggaggCGCGTGGTGTTATTGGGAATAGAGGGGCGGGGG‑GCGCTCACTT‑TTACCGGCCG‑GTTTACCCCCCGGGGGGCG‑AGGGCAGCCAGCAGCGCAC‑CGCTTT‑TCAGGAACAACGTGCCCCC‑CAACCCCCCGCCGGTACACGGGGGGGTAATAAGCAAATTCTCCACGGGGACTTTCAGCGTTTTTGGCCGATCGGGGGGGCACCCGTCAATCATCTGATTTGAGGGCCCGGGGGGAAGCTTAttttcc > 2:555517/1‑248 (MQ=255) ggggctgggtgtggtgTTGTTGGGAATAGAGGGGGGGGGGGGC‑ATCACTT‑TAACCGGACG‑TTTCACCGCTCGGGCGGCG‑AGGGCCGCCAGCAGCGCAT‑CGCTTC‑TCAGGAACAGCTTGCCGCC‑AAACCCTCCGCCGATATACGGGGAGATAATACGCACATTCTCCACGGGAACTTTCAGCGTTTTTGCCAGATCGGTGCGGCACCAGTCAATCATCTGATTTGAGGTCCAGAGGGTAAGCTTATTTCCAt < 1:563489/241‑1 (MQ=255) ggggggtggtgTTTTTGGAAAGAGGGGGGCGGGGGAGC‑CCCCCTT‑TAACCGGACC‑TTGCACCCCTCGGGCGGCG‑GGGGCCGCTCGCCGGTCAT‑CCCTTC‑TCAGGAAAAGCATGCCGCA‑AAACCCTCCGCCGATATTCGGGGAGATAATACGCACATTCTCCACGGGAACGTTCAGCGTTTTTGCCAGATCGGTGCGGCACCAGTCAATCATCTGATTTGAGGTCCAGAGGGTAAGCTTATTTCCATCCCat < 2:574074/246‑2 (MQ=255) ggtgtggggTTATTGGGAATAGAGGGGGGGGGGAGC‑ATCACTT‑TAACCGGACG‑TTTCACCGCTCGGGCGGCG‑AGGGCCGCCAGCAGCGCAT‑CGCTTC‑TCAGGAACAGCTTGCCGCC‑AAACCCTCCGCCGATATACGGGGAGATAATACGCACATTCTCCACGGGAACTTTCAGCGTTTTTGCCAGATCGGTGCGGCACCAGTCAATCATCTGATTTGAGGTCCAGAGGGTAAGCTTATTTCCATCCCAGAc < 1:161187/248‑1 (MQ=255) ggtgtttatgggaaaggggggggggggggAGC‑ATCACTT‑TAACCGGACG‑TTTCACCGCTCGGGCGGCG‑AGGGCCGCCAGCAGCGCAT‑CGCTTC‑TCAGGAACAGCTTGCCGCC‑AAACCCTCCGCCGATATACGGGGAGATAATACGCACATTCTCCACGGGAACTTTCAGCGTTTTTGCCAGATCGGTGCGGCACCAGTCAATCATCTGATTTGAGGTCCAGAGGGTAAGCTTATTTCCATCCCAGACGGcc < 1:524462/232‑1 (MQ=255) ggggtTATGGGGAAGAGAGGGGGGGGGGAG‑‑ATCCCTTGTAACCGGACG‑ATCCCCCGCTCGGGCGGGG‑AGGGCCGCGAGCAGCG‑ATGCGCTTC‑TCAGGACCCGCTTGCCGCC‑AACCCCTCCGCCGATATACGGGGAGATAAGACGCACATTCTCCACTGGAGCTTTCAGTGTTTTTGCCAGATCGGGGCGGCACCAGTCAATCATCTGATTTGAGGGCCAGAGGGTAAGCTTATTTCCATCCCAGACGGCCa < 2:163443/248‑1 (MQ=255) gtgtTATTGGGAATAGAGGGGCGGGGGAGC‑ATCACTT‑TAACCGGACG‑TTTTACCGCTCGGGCGGCG‑AGGGCCGCCAGCAGCGCCT‑CGCTTT‑TCAGGAACAGCTTGCCGCC‑ACACCCTCCGCCGCTATACGGGGAGATAATAAGCACATTCTCCACGGGAACTTTCAGCGTTTTTGCCAGATCGGTGCGGCCCCCGCCAATCATCTGATTTTAGGTCCAGAGGGTAAGCTTATTTCCATCCCAAACGGCCAt > 2:67300/1‑251 (MQ=255) gggtTATGGGGAATAGGGGGGTGGGGGAGC‑AGCCCTT‑TACCCGGGCG‑TTTCCCCGCTCGGGCGGCG‑AGGGCCGCCAGCAGCGCAA‑CGTTTC‑TCAGGAACAGCTTGCCGCC‑AAACCCTCCGCCGATATACGGGGAGATAATACGCACATTCTCCACGGGAACTTTCAGCGTTTTTGCCAGATCGGTGCGGCACCAGTCAATCATCTGATTTGAGGTCCAGAGGGTAAGCTTATTTCCATCCCAGACGGCCAt < 2:280059/249‑1 (MQ=255) tttgggggAATGGGGGGGGGGGGGACC‑ATCACTT‑AACCCGGACG‑TTCCCCCGCTCGGGCGGGG‑AGGGCCGCCAGCAGCGCAT‑CGCTTC‑TCAGGAACAGCTTGCCGCC‑AAACCCTCCGCCGATATACGGGGAGATAATACGCACATTCTCCACGGGAACTTTCAGCGTTTTTGCCAGATCGGTGCGGCACCAGTCAATCATCTGATTTGAGGTCCAGAGGGTAAGCTTATTTCCATCCCAGACGGCCATCg < 2:31564/245‑1 (MQ=255) gggAATAGAGGGGCGGGGGAGC‑ATCACTT‑TAACCGGACG‑TTTCACCGCTCGGGCGGCG‑AGGGCCGCCAGCAGCGCAT‑CGCTTC‑TCAGGAACAGCTTGCCGCC‑AAACCCTCCGCCGATATACGGGGGGATAATACGCACATTCTCCACGGGGACTTTCAGCGTTTTTGCCAGATCGGTGCGGCACCAGTCAATCATCTGATTTGGGGTCCCGAGGGGAAGCTTATTTCCATCCCCGACGGCCATCGAGGCAt > 1:196277/1‑251 (MQ=255) gggAATAGAGGGGCGGGGGAGC‑ATCACTT‑TAACCGGAAG‑TTTCACCGCTCGGGCGGCG‑AGGGCCGCCAGCAGCGCAT‑CGCTTC‑TCAGGAACAGCTTGCCGCC‑CAACCCTCCGCCGATATACGGGGAGATAATAAGCACATTCTCCACGGGAACTTTCCGCGGTTTTGCCCGATCGGGGCGGCACCAGTCCATCCTCGGATTTGAGGTCCAGCGGGGTAGCTTATTTCCATCCCCGCCGGCCACCGGGGCAt > 2:575663/1‑251 (MQ=255) gAATAGAGGGGCGGGGGAGC‑ATCACTT‑TACCCGGACG‑TTTCCCCGCTCGGGCGGCG‑AGGGCCGCCAGCAGCGCAT‑CGCTTC‑TCAGGAACAGCTTGCCGCC‑AAACCCTCCGCCGATATACGGGGAGATAATACGCACATTCTCCACGGGAACTTTCAGCGTTTTTGCCAGATCGGTGCGGCACCAGTCAATCATCTGATTTGAGGTCCAGAGGGTAAGCTTATTTCCATCCCAGACGGCCATCGAGGCATGc < 1:13817/251‑1 (MQ=255) aaTAGGGGGGGGGGGGAGC‑CACCCTT‑TACCCGGACT‑TTTCACCGCCCGGGCGCCG‑GGGGCCGCCAGCGGGGCAT‑CGCTTC‑TCAGGACCAGCTTGCAGCC‑AAACCTTCCGCCGATATACGGGGAGATAATACGCACATTCGCCACGGGAACTTTCAGTGTTTTTGCCAGATCGGTGCGGCACCAGTCAATCATCTGATTTGAGGTCCAGAGGGTAAGCTTATTTCCATCCCAGACGGCCATCGAGGCATGCg < 1:176758/251‑1 (MQ=255) gggCGGGGGAGC‑ATCACTT‑TAACCGGACG‑TTTCACCGCTCGGGCGGCG‑AGGGCCGCCAGCAGCGCAT‑CGCTTC‑TCAGGAACAGCTTGCCGCC‑AAACCCTCCGCCGATATACGGGGAGATAATACGCACATTCTCCACGGGAACTTTCAGCGTTTTTGCCAGATCGGTGCGGCACCAGTCAATCATCTGATTTGAGGTCCAGAGGGTAAGCTTATTTCCATCCCAGACGGCCATCGAGGCATGCGGCTCCAt < 1:44453/251‑1 (MQ=255) | CGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACC‑GCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTG‑AGATAGCGGTGATTTTCCCGCTCTGGT‑CGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAGC‑ATCACTT‑TAACCGGACG‑TTTCACCGCTCGGGCGGCG‑AGGGCCGCCAGCAGCGCAT‑CGCTTC‑TCAGGAACAGCTTGCCGCC‑AAACCCTCCGCCGATATACGGGGAGATAATACGCACATTCTCCACGGGAACTTTCAGCGTTTTTGCCAGATCGGTGCGGCACCAGTCAATCATCTGATTTGAGGTCCAGAGGGTAAGCTTATTTCCATCCCAGACGGCCATCGAGGCATGCGGCTCCAT > NC_000913/299875‑300367 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |