Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	4,289,448	IS1 (+) +9 bp	coding (204‑212/567 nt)	nrfB →	periplasmic nitrite reductase penta‑heme c‑type cytochrome

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1979270	NA (NA)	75 (1.320)	68/490	0.0	98.6%	noncoding (1/768 nt)	IS1	repeat region
	?	NC_000913	= 4289456	1 (0.020)					coding (212/567 nt)	nrfB	periplasmic nitrite reductase penta‑heme c‑type cytochrome
*	?	NC_000913	= 3584195	NA (NA)	82 (1.440)	70/490	0.0	98.8%	noncoding (768/768 nt)	IS1	repeat region
	?	NC_000913	4289448 =	1 (0.020)					coding (204/567 nt)	nrfB	periplasmic nitrite reductase penta‑heme c‑type cytochrome

CCAACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCA  >  NC_000913/1979022‑1979272                                                                                                                                                                                                                                                         |   ccAACGCCATTCAGGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGGGAACGGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTGTTGCCGTTACGCACCACCCCGGCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCa  <  2:51799/251‑1 (MQ=2)                                                                                                                                                                                                                                                         |   CCAACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCA  >  NC_000913/1979022‑1979272

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.