Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 1,069,182 | C→T | G220R (GGA→AGA) | rutG ← | pyrimidine:H(+) symporter |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 1,069,182 | 0 | C | T | 97.4% | 113.1 / NA | 38 | G220R (GGA→AGA) | rutG | pyrimidine:H(+) symporter |
Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (16/21); minor base G (0/1); total (16/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.87e-01 |
GACAGAGCCGGAAAGCATCGTTGCCAGACCATCGCCTACGAATGCCCGCCCCATATACGGGTCCATATTGCG‑TCCGGTCATCCCGGCGACTGCCTTGAGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGGCAGCATGGCTGACGAGAGTAAAATCGACGGCTTTTCCCAGCCCTAAAACGTTGGTCA‑TCACGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAATCAATAACCGCTGGATCATGCCACGGGTAAACACCGCCACCAGCCCAATACACAGCACCGTCATTACCGCCATCCAGCTATCAAAGGCCGAAGCCGATACACTTTTCACTGCGATAGGCGCTAAGTTCAGGCCAATCGCCATCACCACCGCACCCGTCACCACCGGC > NC_000913/1068943‑1069411 | gACAGAGCCGGAAAGCATCGTTGCCAGACCATCGCCTACGAATGCCCGCCCCATATACGGGTCCATATTGCG‑TCCGGTCATCCCGGCGACTGCCTTGAGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGGCAGCATGGCTGACGAGAGTAAAATCGACGGCTTTTCTCAGCCCTaaa > 1:92069/1‑250 (MQ=255) gaatgagtCGTTGCCAGACAAACGCCATCGAATGCCCGCCCCATATCCGGGTCCATCTTCCG‑GCCGTTCATCCCGCCGCCTGCTTGGAGACAACCTAAGTTTTCCCCCCCAAAAATAACCGCCACGGGCGCAATCAGCATCTTTTCCTGACCATTAAAAGCAGGAGTGGAAAAATGTCGCATACCGAACCAGGCAGCATGGCGGTCGAGAGTAAAATCGACGGCGTTTCTCAGCCCTAAAACGTGGGtca‑t < 2:250569/244‑1 (MQ=255) agacctgcgcctagaaacgcccgcccTATACTCGGGGCCATATTGCG‑TCGGGTTTGCCCGGCTTCTGCCTGGATATGTCTTAAGTTTGCCGCCACCAGAATCTCCGCCACGGGCCCAATCATCATCATTGCCTGTCCAGTAAAAGCATGAGAGGAAAAATGTGTCAGACCGAACCAGGCAGCAGGGCTGACGATGGTATAATCGACGGCTTTTCGCAGCGCTAAAACGTTGGTCA‑TCACGCCATAcagcag < 1:305615/233‑1 (MQ=255) cccccccccacgagaccccgcccCATAACCGGGCCCA‑AATGCGGTCCCGTCACCCCGGCGACGGCCTTGAGAGGCCCTAAGTTTTCCGCCCCCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGGCAGCATGGCTGACGAGAGTAAAATCGACGGCCTTTCTCAGCCCTAAAACGTTGGTCA‑TCACGCCATACAGCAGACa < 2:51891/235‑1 (MQ=255) cacccccTACGAATCCCCCCCCCATATACGGGTCCAATTTGCG‑TCCGGTCACCCCGGCGACTGCCTTGAGATGCCCTAAGTTTTCCGCCCCCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGGCAGCATGGCTGACGAGAGTAAAATCGACGGCTTTTCTCAGCCCTAAAACGTTGGTCA‑TCACGCCATACAGCAGACAg < 1:127242/246‑1 (MQ=255) cTACGAATGCCCGCCCCATATACGGGTCCATATTGCG‑TCCGGTCATCCCGGCGACTGCCTTGAGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAACGCAGGAGTGGAAAAATGCGGCAGACCGAACCAGGCAGCATGGCTGACGAGAGCAAAATCGACGGCTTTTCTCAGCCCTAAACCGTTGGTCA‑TCACGCCATACAGCAGACAGGCGAc > 2:88969/1‑250 (MQ=255) aaaTGCCCGCCCCATATACGGGTCCATCTTGCG‑TCCGTTCATCCCGGCGACTGCCTTGAAATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGGCAGCATGGCTGACGAGAGTAAAATCGACGGCTTTTCTCAGCCCTAAAACGTTGGTCA‑TCACGCCATACAGCAGACAGGCGACAATTa < 2:67039/250‑1 (MQ=255) gcccgcccCATATACGGGTCCATATTGCG‑TCCGGTCATCCCGGCGACTGCCTTGAGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGGCAGCATGGCTGACGAGAGTAAAATCGACGGCTTTTCTCAGCCCTAAAACGTTGGTCA‑TCACGCCATACAGCAGACAGGCGACAATTAATcc > 1:1647/1‑251 (MQ=255) cgcccCATATACGGGTCCATATTGCG‑TCCGGTCATCCCGGCGACTGCCTTGAGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGGCAGCATGGCTGACGAGAGTAAAATCGACGGCTTTTCTCAGCCCTAAAACGTTGGTCA‑TCACGCCATACAGCAGACAGGCGACAATTACTCCTAc > 2:128949/1‑251 (MQ=255) gcccCATATACGGGTCCATATTGCG‑TCCGGTCATCCCGGCGACTGCCTTGAGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGGCAGCATGGCTGACGAGAGTAAAATCGACGGCTTTTCTCAGCCCTAAAACGTTGGTCA‑TCACGCCATACAGCAGACAGGCGACAATTAATCCTACg > 1:72719/1‑251 (MQ=255) ataCGGGTCCGTATTGCG‑GCCGGCCTGCCCGGCGACTGCCTGAAGGTGACCTAATTTTCCCGCCCCCAGAAACCCCGCCACGGCCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGCACCAGGCAGCATGGCTGACGAGAGTAAAATCGACGGCTTTTCTCAGCCCTAAAACGTTGGTCA‑TCACGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAATCa < 2:236119/251‑1 (MQ=255) ccGGGTCCATATTGCG‑CCCGGCCATCCCGGCGACTGCCTTGAGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGGCAGCATGGCTGACGAGAGTAAAAGCGACGGCTTTTCTCAGCCCTAAAACGTTGGTCA‑TCACGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAATCAAt < 1:314465/250‑1 (MQ=255) atTGCG‑TCCGGTCATCCCGGCGACTGCCTTGAGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGGCAGCATGGCTGACGAGAGTAAAATCGACGGCTTTTCTCAGCCCTAAAACGTTGGTCA‑TCACGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAATCAATAACCGCTgg > 1:58011/1‑250 (MQ=255) gggCGACTGCCGTGAGAGAACCTAAGTGTCCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGGCAGCATGGCTGACGAGAGTAAAATCGACGGCTTTGCTCAGCCCTAAAACGTTGGTCA‑TCACGCCATACAGCAGACAGGCTACAATTAAGCCTGCGAGAATCAATAACCGCTGGATCATGCCACGGGTAAac < 1:31419/250‑1 (MQ=255) cctgaagacaccctagttctccccccaccaAAACCACCGCCACGGGCGCAATCAGCATCATTGCCGGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGGCAGCATGGCTGACGAGAGTAAAATCGACGGCTTTTCTCAGCCCTAAAACGTTGGTCA‑TCACGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAATCAATAACCGCTGGATCATGCCACGGGTAAACACCGccacc < 2:95188/227‑1 (MQ=255) cccGCCCCCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGGCAGCATGGCTGACGAGAGTAAAATCGACGGCTTTTCTCAGCCCTAAAACGTTGGTCA‑TCACGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAATCAATAACCGCTGGATCATGCCACGGGTAAACACCGCCACCAGCCCAATACACAGCACCGt < 1:112970/250‑1 (MQ=255) ccccacaacaaccgaCCGCCACGGGCGCAAGAAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAAGGTGGCAGACCGAACCAGGCAGCATGGCTGACGAGAGTAAAACCGACGGCTTTTCTCAGCCCTAAAACGTTGGTCA‑TCACGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAACCAATAACCGCTGGATCATGCCACGGGTAAACACCGCCACCAGCCCAATACACAGCACCGTc < 2:143881/237‑1 (MQ=255) ggCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGGCAGCATGGCTGACGAGAGTAAAATCGACGGCTTTTCTCAGCCCTAAAACGTTGGTCA‑TCACGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAATCAATAACCGCTGGATCATGCCACGGGTAAACACCGCCACCAGCCCAATACACAGCACCGTCATTACCGCCATCCAGCTATCaaa < 1:6344/251‑1 (MQ=255) gCATCATTGCCTGACCATTAAAAGCGGGAGTGGAAAAATGTGGCAGACCGACCCAGGCAGCATGGCTGACGAGAGTAAAATCGACGGCTTTTCTCAGCCCTAAAACGTTGGTCA‑TCACGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAATCAATAACCGCTGGATCATGCCACGGGTAAACACCGCCACCAGCCCAATACACAGCACCggaatt < 2:58698/221‑6 (MQ=255) cTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGGCAGCATGGCTGACGAGAGTAAAATCGACGGCTTTTCTCAGCCCTAAAACGTTGGTCA‑TCACGCCATACAGCAGACAGGCGACAATTAATCCTAc > 2:1511/1‑141 (MQ=255) cTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGGCAGCATGGCTGACGAGAGTAAAATCGACGGCTTTTCTCAGCCCTAAAACGTTGGTCA‑TCACGCCATACAGCAGACAGGCGACAATTAATCCTAc < 1:1511/141‑1 (MQ=255) tGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGGCAGCATGGCTGACGAGAGTAAAATCGACGGCTTTTCTCAGCCCTAAAACGTTGGTCA‑TCACGCCATACAGCATACCGGCGACAATTAATCCTACGAGAATCAATAACCTATGGATCATGCCACGGGTAAACACCGCCACCAGCCCAATACCCAGCACCGTCATTACCGCCATCAAGCTATCCAAGGCCGAAGCCGATaccctaa > 2:162341/1‑245 (MQ=255) tGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGGCAGCATGGCTGACGAGAGTAAAATCGACGGCTTTTCTCAGCCCTAAAACGTTGGTCA‑TCACGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAATCAATAACCGCTGGATCATGCCACGGGTAAACACCGCCACCAGCCCAATACACAGCACCGTCATTACCGCCATCCAGCTATCAAAGGCCGAAGCCGATACACt < 1:162341/248‑1 (MQ=255) cATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGGCAGCATGGCTGACGAGAGTAAAATCGACGGCTTTTCTCAGCCCTAAAACGTTGGTCA‑TCACGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAATCAATAACCGCTGGATCATGCCACGGGTAAACACCGCCACCAGCCCAATACACAGCACCGTCATTACCGCCATCCAGCTATCAAAGGCCGAAGCCGATACACTTTTCACt > 2:64033/1‑251 (MQ=255) aaaGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGGCAGCATGGCTGACGAGAGTAAAATCGACGGCTTTTCTCAGCCCTAAAACGTGGGTCA‑TCACGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAATCAATAACCGCTGGATCATGCCACGGGTAAACACCGCCACCAGCCCAATACACAGCACCGTCATTACCGCCATCCAGCTATCAAAGGCCGAAGCCGATACACTTTTCACTGCGAt < 1:60555/251‑1 (MQ=255) gCAGGAGTGGAAAAATGTGGCAGACCGAACCAGGCAGCATGGCTGACGAGAGTAAAATCGACGGCTTTTCTCAGCCCTAAAACGTTGGTCA‑TCACGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAATCAATAACCGCTGGATCATGCCACGGGTAAACACCGCCACCAGCCCAATACACAGCACCGTCATTACCGCCATCCAGCTATCAAAGGCCGAAGCCGATACACTTTTCACTGCGATAgg < 1:266030/251‑1 (MQ=255) ggAAAAATGTGGCAGACCGAACCAGGACGCATGGCTGACGAGAGTAAAATCGACGGCTTTTCTCAGCCCTAAAACGTTGGTCA‑TCACGCCATACAGCAGACCTGCGACAATTAATCCTACGAGCATCAATAACCGCTGGATCATTCCACGGGAAAACACCGCCACCAGCCCAATACACAGCACAGTCATAACCGCCATCCAGCTAACAAAGGCCGACGCCGATACACTTTTCAACGCGATAGGCGCTactt > 2:292509/1‑248 (MQ=255) aTGTGGCAGACCGAACCAGGCAGCATGGCTGACGAGAGTAAAATCGACGGCTTTTCTCAGCCCTAAAACGTTGGTCA‑TCACGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAATCAATAACCGCTGGATCATGCCACGGGTAAACACCGCCACCAGCCCAATACACAGCACCGTCATTACCGCCATCCAGCTATCAAAGGCCGAAGCCGATACACTTTTCACTGCGATAGGCGCTAAGTTCAGGc > 2:2319/1‑251 (MQ=255) gCAGCCCGAACCAGTAGGCATGGCTGACGAGAGTAAAACCGACGGCTTTTCTCAGCCCGAAAACGGTGGTCA‑TCACGCCATACAGCAGACAGGCGACAATTAAGCCTACGAGAATCAATAACCGCTGGTTCATGCCACGGGTAAACACCGCCACCAGCCCAATACACAGCACCGTCATTACCGCCATCCAGCTATCAAAGGCCGAAGCCGATACACTTTGCACTGCGATAGTCGCTAAGTTCAGGCCAATc < 2:37600/251‑1 (MQ=255) gAACCAGGCAGCATGGCTGACGAGAGTAAAATCGACGGCTTTTCTCAGCCCTAAAACGTTGGTCA‑TCACGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAATCAATAACCGCTGGATCATGCCACGGGAAAACACCGCCACCAGCCCAATACACAGCACCGTCATTACCGCCATCCAGCTATCAAAGGCCGAAGCCGATACACTTTTCACTGCGATAGGCGCTAAGTTCAGGCCAATCGCCATc > 1:275/1‑250 (MQ=255) ccAGGCAGCATGGCTGACGAGAGTAAAATCGACGGCTTTTCTCAGCCCTAAAACGTTGGTCA‑TCACGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAATCAATAACCGCTGGATCATGCCACGGGTAAACACCGCCACCAGCCCAATACACAGCACCGTCATTACCGCCATCCAGCTATCAAAGGCCGAAGCCGATACACTTTTCACTGCGATAGGCGCTAAGTTCAGGCCAATCGCCAt < 2:147145/246‑1 (MQ=255) ccAGGCAGCATGGCTGACGAGAGTAAAATCGACGGCTTTTCTCAGCCCTAAAACGTTGGTCA‑TCACGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAATCAATAACCGCTGGATCATGCCACGGGTAAACACCGCCACCAGCCCAATACACAGCACCGTCATTACCGCCATCCAGCTATCAAAGGCCGAAGCCGATACACTTTTCACTGCGATAGGCGCTAAGTTCAGGCCAATCGCCAt > 1:147145/1‑246 (MQ=255) aGGCAGCATGGCTGACGAGAGTAAAATCGACGGCTTTTCTCAGCCCTAAAACGTTGGTCA‑TCACGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAATCAATAACCGCTGGATCATGCCACGGGTAAACACCGCCACCAGCCCAATACACAGCACCGTCATTACCGCCATCCAGCTATCAAAGGCCGAAGCCGATACACTTTTCACTGCGATAGGCGCTAAGTTCAGGCCAATCGCCATCaccacc > 1:211201/1‑251 (MQ=255) ggCAGCAGGGCTGACGGAAGAAAAATCCACGGCTTTTCTCAGCCCTAAACCGTTG‑TCAATCACGCCATACATGAGACAGGCGACAATTAATCTTTCGAGAATCAAGAACCGCTGGATCATGCAACGGGTAAACACCGCCACCAGCCCAATACACCGCACCGTCATTACCGCCATCCAGCTATCAAAGGCCGAAGCCTATACTCTTGTCCCTGCGATAGGCGCTAAGTTCAGGCCAAGCGCCATCACCACCg < 2:139329/251‑1 (MQ=255) gCTGACGAGAGTAAAATCGACGGCTTTTCTCAGCCCTAAAACGTTGGTCA‑TCACGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAATCAATAACCGCTGGATCATGCCACGGGTAAACACCGCCACCAGCCCAATACACAGCACCGTCATTACCGCCATCCAGCTATCAAAGGCCGAAGCCGATACACTTTTCACTGCGATAGGCGCTAAGTTCAGGCCAATCGCCATCACCACCGCACCCGTca < 1:128949/251‑1 (MQ=255) gagaGTAAAATCGACGGCTTTTCTCAGCCCTAAAACGTTGGTCA‑TCACGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAATCAATAACCGCTGGATCATGCCACGGGTAAACACCGCCACCAGCCCAATACACAGCACCGTCATTACCGCCATCCAGCTATCAAAGGCCGAAGCCGATACACTTTTCACTGCGATAGGCGCTAAGTTCAGGCCAATCGCCATCaccacc < 2:225160/235‑1 (MQ=255) gagaGTAAAATCGACGGCTTTTCTCAGCCCTAAAACGTTGGTCA‑TCACGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAATCAATAACCGCTGGATCATGCCACGGGTAAACACCGCCACCAGCCCAATACACAGCACCGTCATTACCGCCATCCAGCTATCAAAGGCCGAAGCCGATACACTTTTCACTGCGATAGGCGCTAAGTTCAGGCCAATCGCCATCaccacc > 1:225160/1‑235 (MQ=255) gagTAAAATCGACGGCTTTTCTCAGCCCTAAAACGTTGGTCA‑TCACGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAATCAATAACCGCTGGATCATGCCACGGGTAAACACCGCCACCAGCCCAATACACAGCACCGTCATTACCGCCATCCAGCTATCAAAGGCCGCAGCCGATACACTTTTCACTGCGATAGGCGCTAAGTTCAGGCCAATCGCCATCACCCCCGCACCCGTCACCACcggc > 2:239657/1‑251 (MQ=255) | GACAGAGCCGGAAAGCATCGTTGCCAGACCATCGCCTACGAATGCCCGCCCCATATACGGGTCCATATTGCG‑TCCGGTCATCCCGGCGACTGCCTTGAGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGGCAGCATGGCTGACGAGAGTAAAATCGACGGCTTTTCCCAGCCCTAAAACGTTGGTCA‑TCACGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAATCAATAACCGCTGGATCATGCCACGGGTAAACACCGCCACCAGCCCAATACACAGCACCGTCATTACCGCCATCCAGCTATCAAAGGCCGAAGCCGATACACTTTTCACTGCGATAGGCGCTAAGTTCAGGCCAATCGCCATCACCACCGCACCCGTCACCACCGGC > NC_000913/1068943‑1069411 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |