| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,059,179 | A→G | T366A (ACC→GCC) | torC → | cytochrome c menaquinol dehydrogenase TorC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,059,179 | 0 | A | G | 97.1% | 94.5 / ‑6.1 | 34 | T366A (ACC→GCC) | torC | cytochrome c menaquinol dehydrogenase TorC |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (17/16); minor base T (1/0); total (18/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGAGAAAACCACCGTTGCCGACACCAATACCGAGTGGAGCAAGTTGCAGGCCACTGCGTGGATGAAGAAAGGCGACATGGTGAACGATATCA‑AACCGATCTGGGCTTATGCGGATTCGTTGTACAACGGCACCTGTAACCAGTGCCACGGCGCACCGGAAATCGCCCACTTTGACGCTAACGGTTGGATCGGCACGCTCAACGGCATGATTGGCTTTACCAGTCTCGATAAACGTGAAGAACGCACCTTGTTGAAATATCTGCAAATGAATGCGTCTGACACCGCAGGTAAGGCTCACGGCGATAAGAAGGAAGAAAAATAATGAACAATAACGATCTCTTTCAGGCATCACGTCGGCGTTTTCTGGCACAACTCGGCGGCTTAACCGTCGCCGGGATGCTGGGGCCGTCATTGTTAACGCCGCGACGTGCGACTGCGGCGCAAGCGGCGACTGACGCTGTCATCTCGAAAGAGGGCATTCTTACCGGGTC > NC_000913/1058935‑1059425 | ggAGAAAACCACCGTTGCCGACACCAATACCGAGTGGAGCAAGTTGCAGGCCACTGCGTGGATGAAGAAAGGCGACATGGTGAACGATATCA‑AACCGATCTGGGCTTATGCGGATTCGTTGTACAACGGCACCTGTAACCAGTGCCACGGCGCCCCGGAAATCGCCCACTTTGACGCTAACGGTTGGATCGGCACGCTCAACGGCATGATTGGCTTTACCAGTCTCGATAAACGTTAAGAACGCGCCttg < 2:249510/250‑1 (MQ=255) aaaaCCTCCGTTGCCGACACCAATACCGAGTGGAGCAAGTTGCAGGCCGCTGCGTGGATGAAGAAAGGAGACATGGTTAACGATAGCA‑AACCGATCCGGGCTTAGGCTGATACTTTGTACAACGGCACCTGCAACCCTTGCCACGGCGCACCGGAAATCGCCCATTGTGACGCTAACGGTTGGATCGGCACGCGCAACGGCATTAGTGTCTTTACCAGTCTCGATAAACGTGAAGAACGCGCCTGGTTGaa < 2:133878/251‑1 (MQ=255) ccaccGTTGCCGACACCAATACCGAGTGGAGCAAGTTGCAGGCCACTGCGTGGATGAAGAAAGGCGACATGGTGAACGATATCA‑AACCGATCTGGGCTTATGCGGATTCGTTGTACAACGGCACCTGTAACCAGTGCCACGGCGCACCGGAAATCGCCCACTTTGACGCTAACGGTTGGATCGGCACGCTCAACGGCATGATTGGCTTTACCAGTCTCGATAAACGTGAAGAACGCGCCTTGTTGAAatat < 2:140079/251‑1 (MQ=255) ccaccGTTGCCGACACCAATACCGAGTGGAGCAAGTTGCAGGCCACTGCGTGGATGAAGAAAGGCGACATGGTGAACGATATCA‑AACCGATCTGGGCTTATGCGGATTCGTTGTACAACGGCACCTGTAACCAGTGCCACGGCGCACCGGAAATCGCCCACTTTGACGCTAACGGTTGGATCGGCACGCTCAACGGCATGATTGGCTTTACCAGTCTCGATAAACGTGAAGAACGCGCCTTGTTGAAatat > 1:111124/1‑251 (MQ=255) aTACCGAGTGGAGCAAGTTGCAGGCCACTGCGTGGATGAAGAAAGGCGACATGGTGAACGATATCA‑AACCGATCTGGGCTTATGCGGATTCGTTGTACAACGGCCCCTGTACCCAGTGCCACGGCGCACCGGAAATCGCCCACTTTGACGCTAACGGTTGGATCGGCACGCTCAACGGCATGATTGGCTTTACCAGTCTCGATAAACGTGAAGAACGCGCCTTGTTGAAATATCTGCAAATGAATGCGTCt < 2:58830/251‑1 (MQ=255) ccGAGTGGAGCAAGTTGCAGGCCACTGCGTGGATGAAGAAAGGCGACATGGTGAACGATATCA‑AACCGATATGGGCTTATGCGGATTCGTTGTACAACGGCACCTGTAACCAGTGCCACGGCGCACCGGAAATCGCCAACTTTGACGCTAACGGTTGGATCGGCACGCTCAACGGCATGATTGGCTTTCCCAGTCTCGATAACAGTGACGAACGCTCCTTGTTTGAATATCTGCAAATGAATGCGTCTgcc > 2:231375/1‑249 (MQ=255) aGCAAGTTGCAGGCCACTGAGTGGATGGAGAAAGGCGACATGGTGAACGCTATCACAACC‑ATCTGGGCTTATGCGGATTCGTTGTACAACGGAACCTGTAACAGGAGCCACGGCGAACCGGAAATAGCCAACTTTGACGAAAACGGTTGGAGCGGCACGATCAACGGCATGATTGGATTTACCCGCCGCGATAGAAGTGCAGAACGCGCCTTGTTTAAATATCAGCAAATGAATGCGTCTAACACCGCAgg > 2:264315/1‑251 (MQ=255) gCAGGCCACTGCGTGGATGAAGAAAGGCGACATGGTGAACGATATCA‑AACCGATCTGGGCTTATGCGGATTCGTTGTACAACGGCACCTGTAACCAGTGCCACGGCGCACCGGAAATCGCCCACTTTGACGCTAACGGTTGGATCGGCACGCTCAACGGCATGATTGGCTTTACCAGTCTCGATAAACGTGAAGAACGCGCCTTGTTGAAATATCTGCAAATGAATGCGTCTGACACCGCAGGTAAGGCTc < 1:234067/251‑1 (MQ=255) aCTGCGTGGATGAAGAAAGGCGACATGGTGAACGATATCA‑AACCGATCTGGGCTTATGCGGCTTCGTTGTACAACGGCACCTGTAACCAGTGCCACTGCGCACCGGAGATCGCCCACTTTGACGCTAACGGTTGGATCGGCACGCTCAACGGCATGATTGGCTTTACCCGTCTCGATAAACGCGAAGAACGCGCCtt > 2:233547/1‑197 (MQ=255) aCTGCGTGGATGAAGAAAGGCGACATGGTGAACGATATCA‑AACCGATCTGGGCTTATGCGGATTCGTTGTACAACGGCACCTGTAACCAGTGCCACGGCGCACCGGAAATCGCCCACTTTGACGCTAACGGTTGGATCGGCACGCTCAACGGCATGATTGGCTTTACCAGTCTCGATAAACGTGAAGAACGCGCCTTGTTGAAATATCTGCAAATGAATGCGTCTGACACCGCAGGTAAGGCTCACGGCGa < 1:113361/251‑1 (MQ=255) gaagaaAGGCGACATGGTGAACGATATCA‑AACCGATCTGGGCTTATGCGGATTCGTTGTACAACGGCACCTGTAACCAGTGCCACGGCGCACCGGAAATCGCCCACTTTGACGCTAACGGTTGGATCGGCACGCTCAACGGCATGATTGGCTTTACCAGTCTCGATAAACGTGAAGAACGCGCCTTGTTGAAATATCTGCAAATGAATGCGTCTGACACCGCAGGTAAGGCTCACGGCGATAAgaaggaag < 1:63712/251‑1 (MQ=255) agaaAGGCGACATGGTGAACGATATCA‑AACCGATCTGGGCTTATGCGGATTCGTTGTACAACGGCACCTGTAACCAGTGCCTCGGCGCACCGGAAATCGCCCACTTTGACGCTAACGGTTGGAGCGGCACGCTGAACGTCATTATTGGCTTTACCAGTCTCGATAAACGGGAAGAACGCGCCTTGTTTAAATATCTGCAAAGGAATGCGTCTGTTGCCGTAGGTAAGGCTCACGGCGATAAGAAGgaagaa < 1:264315/251‑1 (MQ=255) aCATGGTGAACGATATCA‑AACCGATCTGGGCTTATGCGGATTCGTTGTACAACGGCACCTGTAACCAGTGCCACGGCGCACCGGAAATCGCCCACTTTGACGCTAACGGTTGGATCGGCACGCTCAACGGCATGATTGGCTTTACCAGTCTCGATAAACGTGAAGAACGCGCCTTGTTGAACTATCTGCAAATGAATGCGTCTGACACCGCAGGTAAGGCTCACGGCGATAAGAAGGAAGAAAAATAATg > 2:116398/1‑250 (MQ=255) aCATGGTGAACGATATCA‑AACCGATCTGGGCTTATGCGGATTCGTTGTACAACGGCACCTGTAACCAGTGCCACGGCGCACCGGAAATCGCCCACTTTGACGCTAACGGTTGGATCGGCACGCTCAACGGCATGATTGGCTTTACCAGTCTCGATAAACGTGAAGAACGCGCCTTGTTGAAATATCTGCAAATGAATGCGTCTGACACCGCAGGTAAGGCTCACGGCGATAAGAAGGAAGAAAAATAATg > 1:118910/1‑250 (MQ=255) atatCA‑AACCGATCTGGGCTTATGCGGATTCGTTGTACAACGGCACCTGTAACCAGTGCCACGGCGCACCGGAAATCGCCCACTTTGACGCTAACGGTTGGATCGGCACGCTCAACGGCATGATTGGCTTTACCAGTCTCGATAAACGTGACGAACGCGCCTTGTTGAAATATCTGCAAATGAATGCGTCTGACACCGCAGGTAAGGCTCACGGCGATAAGAAGGAAGAAAAATAATGaa > 1:191347/1‑240 (MQ=255) atatCA‑AACCGATCGGGGCTTATGCGGAGTCGGTGTACAACGGCACCTGTAACCAGTGCCACGGCGCTCCGGAAATCGCCCACTTTGACGCTAACGGTTGGATCGGCACGCTCAACGGCATGATTGGCTTTACCAGTCTCGATAAACGTTAAGAACGCGCCTTGTTGAAATATCTGCAAATGAATGCGTCTGACACCGCAGGTAAGGCTCACGTCGATAAGAAGGAAGAAAAAGAATGaa < 2:191347/240‑1 (MQ=255) ggCTTATGCGGATTCGTTGTACAACGGCACCTGTAACCAGTGCCACGGCGCACCGGAAATCGCCCACTTTGACGCTAACGGTGGGATCGGCACTCTCAACGGCATGATTGGCTTTACCAGTCTCGATAAACGTGAAGAACGCGCCTTGTTGAAATATCTGCAAATGAATGCGTCTGACACCGCAGGTAAGGCTCACGGCGATAAGAAGGAAGAAAAATAGTGAACAATAACGATCTCTTTCAGGCATCACg < 1:265779/251‑1 (MQ=255) aTGCGGATTCGTTGTACAACGGCACCTGTAACCAGTGCCACGGCGCACCGGAAATCGCCCACTTTGACGCTAACGGTTGGATCGGCACGCTCAACGGCATGATTGGCTTTACCAGTCTCGATAAACGTGAAGAACGCGCCTTGTTGAAATATCTGCAAATGAATGCGTCTGACACCGCAGGTAAGGCTCACGGCGATAAGAAGGAAGAAAAATAATGAACAATAACGATCTCTTTCAGGCATCACGTCGGc > 1:172186/1‑251 (MQ=255) ggATTCGTTGTACAACGGCACCTGTAACCAGTGCCACGGCGCACCGGAAATCGCCCACTTTGACGCTAACGGTTGGATCGGCACGCTCAACGGCATGATTGGCTTTACCAGTCTCGATAAACGTGAAGAACGCGCCTTGTTGAAATATCTGCAAATGAATGCGTCTGACACCGCAGGTAAGGCTCACGGCGATAAGAAGGAAGAAAAATAATGAACAATAACGATCTCTTTCAGGCATCACGTCGGCGttt > 2:302680/1‑251 (MQ=255) aCCTGTAACCAGTGCCACGGCGCACCGGAAATCGCCCACTTTGACGCTAACGGTTGGATCGGCACGCTCAACGGCATGATTGGCTTTACCAGTCTCGATAAACGTGAAGAACGCGCCTTGTTGAAATATCTGCAAATGAATGCGTCTGACACCGCAGGTAAGGCTCACGGCGATAAGAAGGAAGAAAAATAATGAACAATAACGATCTCTTTCAGGCATCACGTCGGCGTTTTCTGGCACAACTCggcggc > 1:227271/1‑251 (MQ=255) aCCAGTGCCACGGCGCACCGGAAATCGCCCACTTTGACGCTAACGGTTGGATCGGCACGCTCAACGGCATGATTGGCTTTACCAGTCTCGATAAACGTGAAGAACGCGCCTTGTTGAAATATCTGCAAATGAATGCGTCTGACACCGCAGGTAAGGCTCACGGCGATAAGAAGGAAGAAAAATAATGAACAATAACGATCTCTTTCAGGCATCACGTCGGCGTTTTCTGGCACAACTCGGCGGCTTAACCg < 2:118910/251‑1 (MQ=255) aCCAGTGCCACGGCGCACCGGAAATCGCCCACTTTGACGCTAACGGTTGGATCGGCACGCTCAACGGCATGATTGGCTTTACCAGTCTCGATAAACGTGAAGAACGCGCCTTGTTGAAATATCTGCAAATGAATGCGTCTGACACCGCAGGTAAGGCTCACGGCGATAAGAAGGAAGAAAAATAATGAACAATAACGATCTCTTTCAGGCATCACGTCGGCGTTTTCTGGCACAACTCGGCGGCTTAACCg < 2:111124/251‑1 (MQ=255) gCCACGGCGCACCGGAAATCGCCCACTTTGCCGCTAACGGTTGGCTCGGCACGCTCAACGGCATGATTGGCTTTACCCGTCTCGATAAACGTGAAGCACGCGCCTTGTTGAAATATCTGCAAATGAATGCGTCTGACACCGCAGGTAAGGCTCCCGGCGCTAAGAAGGAAGAAAAATAATGAACCATAACGATCTCTTTCAGGCATCACGTCGGCGTTTTCTGGCTCAACTCGGCGGCTTAACCGTCGccc > 2:96106/1‑250 (MQ=255) cACCGGAAATCGCCCACTTTGACGCTAACGGTTGGATCGGCAAGCTCAACGGCATGATTGGCTTTACCAGCCTCGATAAACGTGAAAAACGCGCCTTGTTGAAATATCTGCAAATGAATGCGACTGACACCGCAGGTAAGGCTCACGGCGATAAGAAGGAAGAAAAATAATGAACAATAACGATCTCTTTCAGGCATCACGTCGGCGTTTTCTGGCACAACTCGGCGGCTTAACCGTCGCCGGGATGCTgg > 1:250460/1‑251 (MQ=255) tGACGCTAACGGTTGGATCGGCACGCTCAACGGCATGATTGGCTTTACCAGTCTCGATAAACGTGAAGAACGCGACTTGTTGAAATATCTGCAAATGACTGCGTCTGACACCGCAGGTAAGGCTCACGGCGATCAGAAGGAAGAAAAATAATGAACAATAACGATCTCTTTCAGGCATCACGTCGGCGTTTTCTGGCACAACTCGGCGGCTTAACCGTCGCCGGGATGCTGGGGCCGTCATTGTTAAcgcc > 2:136583/1‑251 (MQ=255) aCGCTAACGGTTGGATCGGCACGCTCAACGGCATGATTGGCTTTACCAGTCTCGATAAACGTGAAGAAAGAGCCTAGTTGAAATATCTGCAAATGAATGCGGCTGAAACCGCAGGTAAGGATAAAGGCGATAAGACGGAAGAAAAATCATGAACAATACAGATCTCTTTCAGGCATCACGTCGGCGTTTTCTGGAACAACTCGGCGGCTTAACCGTCGCCGGGATGCTGGGGCAGTCATTGTTAAcgccgc > 1:195758/1‑251 (MQ=255) aaCGGTTGGATCGGCACGCTCAACGGCATGATTGGCTTGACCAGGCTCGATAAACGTGAAGAACGCGCCTTGTTGAAATATCTGCAAATGAAGGCGTCTGACACCGCAGGGAAGGCTCACGGCGATAAGAAGGAAGAAAAATAATGAACAATAACGATCTCTTTCAGGCAGCACGTCGGCGTTTTCTGGCACAACTCGTCGGCTTAACCGTCGCCGGGATGCTGGGGCCGTCATTGTTAACGCCGCGACg < 2:154436/250‑1 (MQ=255) cTCAACGGCATGATTGGCTTTACCAGTCTCGATAAACGTGAAGAACGCGCCTTGTTGAAATATCTGCAAATGAATGCGTCTGACACCGCAGGTAAGGCTCACGGCGATAAGAAGGAAGAAAAATAATGAACAATAACGATCTCTTTCAGGCATCACGTCGGCGTTTTCTGGCACAACTCGGCGGCTTAACCGTCGCCGGGATGCTGGGGCCGTCATTGTTAACGCCGCGACGTGCGACTGCGGCGCAAgcg > 2:271806/1‑251 (MQ=255) ggCATGATTGGCTTTACCAGTCTCTATAATCGTGAAGAACGCGCCTTGTTGAAATATCTGCAAATGAATGCGTCTGACACCGCAGGTAAGGCTCACGGCGATAAGAAGGAAGAAAAAGAATGAACAATAACGATCTCTTTCAGTCATCGCGTCGGCGTTTTCTAGCACAACTCGGCGGCTTGACTGTCGCCGGGATGCTGGTGCCGTCATTGTTAACGCCGCGACGTGCGACTGCGGCGCAAGCGGCGACt < 1:128718/251‑1 (MQ=255) ttGGCTTTACCAGTCTAGATAAACGTGAAGAACGCGCCTTGTTGAAATATCTGCAAATGAATGCGTCTGACACCGCAGGTACGACTCACGGCGCTAAGAAGGAAGAAAAATAATGAACAATAACGATCTCTTTCAGGCATCACGTCGGCGTTTTCTGGCACAACTCGGCGGCTTAACAGTCGCCGGGATGCTGGGGCCGTCATTGTTAACGCCGCGACGTGCGACTGCGGCGCAAGCAGCGACTGACGCTg > 1:155625/1‑251 (MQ=255) tAAACGTAAAGAACGCGCCTTGTTGAAATATCTGCAAATGAATGCGTCTGACACCGCAGGTAAGGCTCACGGCGATAAGAAGGAAGAAAAATAATGAACAATAACGATCTCTTTCAGGCATCACGTCGGCGTTTTCTGGCACAACTCGGCGGCTTAACCGTCGCCGGGATGCTGGGGCCGTCATTGTTAACGCCGCGACGTGCGACTGCGGCGCAAGCGGCGACTGACGCTGTCATCTCGAAAGAGGGCAt > 1:224053/1‑251 (MQ=255) acaCGTGAAGAACGCGCCGTGTTGAAATATCTGGAAATGAATGCGTCTGACACCGCAGGTAAGGCTCACGGCGATAAAAAGGAAGAAAAATAATGAACAATAACGGTCTCTGTCAGGCATCACGTCGGCGTTTGCTGTCACAACGCGGCGGCTTAACCGTCGCCGGGGTGTTGTGGCCGTCATTGTTAACGCCGGGGCGTGCGAGTGCGGGGGCAGGGGCGTCTGGCGCTGTCATCTCTAAagattgcatt < 2:97711/249‑8 (MQ=255) aaCGCGCCTTGTTGAAATATCTGCAAATGAATGCGTCTGACCACGCAGGTAAGGCTCAAGGCCATAAGAAGGACGAAAAATACTGAACAATAACGCTCTCTTTCAGCCATCACGTCGGCGTTTTCTGGCACAACTCGGCGGCTTAACCGTCGCCGGGATGCTGGGGCCGTCATTGTTACCGCCGCGCCGTGCGACTGCGGCGCAAGCGGCGACTGACGCTGTCATCTCGTACGCGGGCATTCTTACCGGGt > 2:38539/1‑251 (MQ=255) aCGCGCCTTGTTGAAATATCTGCAAATGAATGAGTCTGACACCGCAGGTAAGGCTTACGGCGATAAGAAGGAAGAAAAATAATGAACAATAACGATCTCTTACAGGCATCACGTCGGCGTTTTCTGGCACAACTCGGCGGCTTAACCGTCGCCGGGATGCTGGGGCCGTCATTGTTAACGCCGCGACGTGCGACTGCGGCGCAAGCGGCGACTGACGCTGTCATCTCGAAAGAGGGCATGCTTACCGGGTc < 2:223554/251‑1 (MQ=255) | GGAGAAAACCACCGTTGCCGACACCAATACCGAGTGGAGCAAGTTGCAGGCCACTGCGTGGATGAAGAAAGGCGACATGGTGAACGATATCA‑AACCGATCTGGGCTTATGCGGATTCGTTGTACAACGGCACCTGTAACCAGTGCCACGGCGCACCGGAAATCGCCCACTTTGACGCTAACGGTTGGATCGGCACGCTCAACGGCATGATTGGCTTTACCAGTCTCGATAAACGTGAAGAACGCACCTTGTTGAAATATCTGCAAATGAATGCGTCTGACACCGCAGGTAAGGCTCACGGCGATAAGAAGGAAGAAAAATAATGAACAATAACGATCTCTTTCAGGCATCACGTCGGCGTTTTCTGGCACAACTCGGCGGCTTAACCGTCGCCGGGATGCTGGGGCCGTCATTGTTAACGCCGCGACGTGCGACTGCGGCGCAAGCGGCGACTGACGCTGTCATCTCGAAAGAGGGCATTCTTACCGGGTC > NC_000913/1058935‑1059425 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |