Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 4,277,898 | A→G | T144A (ACC→GCC) | soxR → | DNA‑binding transcriptional dual regulator SoxR |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 4,277,898 | 0 | A | G | 97.1% | 98.9 / ‑4.2 | 34 | coding (430/465 nt) | soxR | DNA‑binding transcriptional dual regulator SoxR |
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (16/17); minor base . (0/1); total (16/18) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.92e-01 |
CTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAG‑GTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTGGTACACAGGAGGGTTTCCCCCGACGTCAACACACCTCATTCGAGCACGTGGTGGAGGTTCCGGTTGGTGTTGATGCTTTAATTGTATGTCACCGACGTTTCTTCGCCAGTGTAAAAGTATACTTTTTAACCGCAATATTTTT > NC_000913/4277656‑4278134 | cTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAG‑GTGCCGgcgc > 1:145189/1‑250 (MQ=255) cAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATTCCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTATCCCGGGCGACCGCTTAGGAGAAGAAG‑GTGCCGGCGCAc < 1:17997/250‑1 (MQ=255) cGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCCTAACCCGGGCGACCGCTAAGGAGAAGAAG‑GGGCCGGCGCCCGCtt > 2:180295/1‑251 (MQ=255) aTTGGCATTCCGCTGGCGACCATTGGTGAAGCGTGTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAG‑GTGCCGGCGCACGCTTGc < 2:62928/250‑1 (MQ=255) ggCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAG‑GTGCCGGCGCACGCTTGCTGGa < 2:216144/251‑1 (MQ=255) gCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAG‑GTGCCGGCGCACGCTTGCTGGa > 1:59426/1‑250 (MQ=255) cATTCCGCTGACGACCATTGGTGAAGCGGTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGATGGATCGGCGCATTCATACCTTAGCGGCTCTGCGTGACGAACTGGCCGGATGAATTCGTTGTGGCTGCCTTTCGCGCCAAGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGCGAAGAAG‑GAGCCGGCGCACGCTTGCTGGa > 2:276351/1‑249 (MQ=255) ttGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAG‑GTGCCGGCTCGCGCTTTCTGGAAGATGAACAAAACTAAAGCGCCACAAGGgc < 1:14737/250‑1 (MQ=255) gCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGGCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCGTAGTGGCGCGGCGTTACGAACGGGACGGATGTAGGGGTTGGGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGGAACCCGGGCGACCGCTTAGAAGAAGAAG‑GTGCCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAATCGCCACAAGGGCGCTTTAggttg < 2:30592/251‑1 (MQ=255) cccGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAG‑GTGCCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAgtttgt < 1:242438/251‑1 (MQ=255) aaGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAG‑GTGCCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTc < 2:244876/251‑1 (MQ=255) cGTTAAGTGCGAAATAGGGGAAACAGCTTTCGTCTCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGGGGCGCTGCGTGACGAACTGGACGGATGTATTGGTGGTGGCTGCCTTTCGCGCAGTGATTGTCCGTTGCGTAATCCGGGCGACCGCTTAGGAGAAGAAG‑GTGCCGGCGCACGCTTTCTGGAAGATGAACAAAACTAAAGCGCCACTAGGTCGCTTTAGTTTGTTTTCCGgtctttg < 2:81413/251‑1 (MQ=255) ggtAAGTGCGCAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAG‑GTGCCTGCGCACGCTTGCTGGAATATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGgtctttgt < 2:237411/249‑1 (MQ=255) ttAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAG‑GTGCCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGgtctttgtc > 1:241223/1‑251 (MQ=255) gCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAG‑GTGCCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTtct < 1:50658/250‑1 (MQ=255) aaaGAATGGAAACCGCTTTCGTCACTATGGAGAGAAGAGTTGGATACGCGAATTAATACCTTACTAGCGCTCCGTGAAGAAATGGACGGATGTACTGGATGTGGCTGCCTTTCGCGCAGTGACTGCCCGAAGCGTAAACCGGGCGACAGCTCTGGAGAAGAAG‑GTGACGGAGCCCGCTTGCTGGAAGATGAACCAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTACGGTCTTTTTCTTTcactct > 2:283629/1‑251 (MQ=255) aaaCAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAG‑GTGCCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTg < 2:72527/251‑1 (MQ=255) gTCCCAATGGCGAGCAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAG‑GTGCCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACACGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTGGTACACagg > 2:287775/1‑249 (MQ=255) tGGCGAGTAAAGATGGATCGCCGCATTCATACCTTAGTGGCGCTGCGTGACGACCTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTCGGAGGAGACG‑GTGCCGGCGCCCGCTTGCTGGAAGATGAACAAAACTAAAGCGCCCCAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTGGTACACAGGAGGGTTTcc > 2:255249/1‑251 (MQ=255) ggATCGGCGCATTCATTCCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAG‑GTGCCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTGGTACACAGGAGGGTTTCCCCCGACGTCAacac < 2:59426/251‑1 (MQ=255) cGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAG‑GTGCCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTGGTACACAGGAGGGTTTCCCCCGACGTCAACACACCt < 1:130956/251‑1 (MQ=255) tACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAG‑GTGCCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTGGTACACAGGAGGGTTTCCCCCGACGTCAACACACCTCATTCGAGCAc > 2:162609/1‑251 (MQ=255) tGGCGCTGCGTGCCGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAG‑GTGCCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTGGTACACAGGAGGGTTTCCCCCGACGTCAACACACCTCCTTCGAGCCCgtgggggg > 2:35813/1‑247 (MQ=255) ggCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCCTAACCCGGGCGACCGCTAAGGAGAAGAAG‑GTGCCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTGGTACACAGGAGGGTTTCCCCCGACGTCAACACACCTCATTCGAGCACGTGGTGGa < 1:180295/250‑1 (MQ=255) acggtaCGGATGTATTGGGTGTGGCTGCCTTTCGCTCAGTGATTGCCCGTTGCTTATCCCTGGCGATCGCTTAGGAGAAGAAGTGT‑CCGGCGCTCGCTTGCTTGAAGTTGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGGCTTTGTCTTTCTCGCTATCCCGCTGTTGCACAGTAGGTTTTCCCCCGTCGTCATCACTCCTCATTCTAGCACgtggtgtattgtccggttggtttg < 2:273946/246‑19 (MQ=255) cTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAG‑GTGCCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTGGTACACAGGAGGGTTTCCCCCGACGTCAACACACCTCATTCGAGCACGTGGTGGAGGTTCCGGTTGGTGTTg > 1:85288/1‑251 (MQ=255) cTGGACGGAAGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTCACCCGGGCGACCGCTTAGGAGCAGAAG‑GTGCCGGCGCACGCTTGCTGGAAGCTGAACAAAACTAAAGCGCCACAAGGGAGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTGGTACACAGGAGGGTTTCCCCCGACGTCAACACACCTCATTAGAGCACGTGGAGGAGGTTCCGGTTGGTGTTg > 2:254418/1‑251 (MQ=255) aCGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAG‑GTGCCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTGGTACACAGGAGGGTTTCCCCCGACGTCAACACACCTCATTCGAGCACGTGGTGGAGGTTCCGGTTGGTGTTGATGc < 1:243441/251‑1 (MQ=255) gtgGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAG‑GTGCCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTGGTACACAGGAGGGTTTCCCCCGACGTCAacaca < 2:71549/193‑1 (MQ=255) gtgGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAG‑GTGCCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTGGTACACAGGAGGGTTTCCCCCGACGTCAacaca > 1:71549/1‑193 (MQ=255) tctcgcAGTGATTGACAGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGCAG‑GTGCCGGCGCACGCTTGCTGGAAGATGCACAAAACTAACGCGCTACAAGGGCGCTTCAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATTCCGCTGGTACACAGGCGGGTTTCCCCCGACGTCAACACAACTCATTCGAGCACGTGGTGGAGGTTCCTGTTGGTGTTGAGGCTTTAATTGTATGTCACCGACGCttct > 2:2657/4‑251 (MQ=255) gcAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAG‑GTGCCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCAGGTCTTTGTCTTTCTCTCTATCCCGCTGGTACACAGGAGGGTTTCCCCCGACGTCAACACACCTCATTCGAGCACGTGGTGGAGGTTCCGGTTGGTGTTGATGCTTTAATTGTATGTCACCGACGTTTCTTCGc > 1:210941/1‑251 (MQ=255) tGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAG‑GTGCCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACACGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTGGTACACAGGAGGGTTTCCCCCGACGTCAACACACCTCATTCGAGCACGTGGTGGAGGTTCCGGTTGGTGTTGATGCTTTAATTGTATGTCACCGACGTTTCTTCGCCAgt > 1:175514/1‑251 (MQ=255) aGGAGAAGAAG‑GTGCCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTGGTACACAGGAGGGTTTCCCCCGACGTCAACACACCTCATTCGAGCACGTGGTGGAGGTTCCGGTTGGTGTTGATGCTTTAATTGTATGTCACCGACGTTTCTTCGCCAGTGTAAAAGTATACTTTTTAACCGCAATAttttt < 2:63988/250‑1 (MQ=255) | CTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAG‑GTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATCCCGCTGGTACACAGGAGGGTTTCCCCCGACGTCAACACACCTCATTCGAGCACGTGGTGGAGGTTCCGGTTGGTGTTGATGCTTTAATTGTATGTCACCGACGTTTCTTCGCCAGTGTAAAAGTATACTTTTTAACCGCAATATTTTT > NC_000913/4277656‑4278134 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |