New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 257907	0 (0.000)	16 (0.580)	14/468	0.7	100%	intergenic (+8/+16)	crl/insB9	RNA polymerase holoenzyme assembly factor Crl/IS1 family transposase B
	?	NC_000913	258684 =	0 (0.000)					pseudogene (9/331 nt)	crl	RNA polymerase holoenzyme assembly factor Crl

TCATCATCTGCTGACGGTAAATTATTAGAGATCCCATTTAACCCGGTGTATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATA  >  NC_000913/257661‑258137                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                       tcatcaTCTGCTGACGGTAAATTATTAGAGATCCCATTTAACCCGGTGTATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGTAGATAGCACTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATAAAAAAATTTACCGCACTAGGCCCGTGTATTCGTGAaggtatgtg                                                                                                                                                                                                                                    >  2:62961/1‑247 (MQ=255)                                   cATTTAACCCGGTGTATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggct                                                                                                                                                                                                  <  2:75863‑M1/251‑39 (MQ=255)                                                    cGGAATTTTGACAAAGGTCTTCAGGAAATCATCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGAGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaccgtga                                                                                                                                                                                  >  2:211977‑M1/1‑196 (MQ=255)                                                                                        tGGATCGAAAAACGCTTGTGTTAAAAATTTCATAACTTTTGCCCATCTGGTAAAACAGCTGCATCCCAACAGGAGATAGCAATGACGTTCCAGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaacccggcaccggaagtgcgtgcattctggggctggtg                                                                                                                                             >  1:287975‑M1/1‑160 (MQ=255)                                                                                               caaaacGCTTGTTTTAAAAATTTGCTAAATTTTGCCAATTTGGAAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtaaacgtgaaaccggcaccggcagtgcgagcatt                                                                                                                                                         >  2:173120‑M1/2‑153 (MQ=255)                                                                                               aaaaaCGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcgaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaatt                                                                                                                                                         <  1:173120‑M1/232‑80 (MQ=255)                                                                                                     gCTTGTGTTAAAAATTTGCTAAATTTTGCCAATGTGGTAAAACAGTTTCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcgtttgcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaatgctggggctggtggatggagctggaa                                                                                                                                <  2:101537‑M1/251‑105 (MQ=255)                                                                                                                    ttGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGCGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGAGAAGGTAagtgcaaagatactcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagccggaagcgcaggaatcccgt                                                                                                                 >  2:270495‑M1/1‑132 (MQ=255)                                                                                                                     tGCTAAATTTAGCCAATTTGGGAAAACAGTGGCATCACAACAGGAGATATAAATGACGTTACCGAGTGGACACCCGAAAAGCCGCTTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGACGGTAagtgcaaagataatagattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaggtgcgtgcagtctggggctggggggaggagctggaagcgaaggactcccgtt                                                                                                                >  2:99848‑M1/1‑131 (MQ=255)                                                                                                                                                                                        ggACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagagtgttccggtaaaaga                                             <  1:248839‑M1/251‑188 (MQ=255)                                                                                                                                                                                               cGAAGAGCAGATTGATCAAAAAAGTTACCTCACTAGGCCCGTATATGCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcttcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagcgggaagcgcaggaatcccgttttacctacagtgaccagtgtggtctgttcgataaagcaggcgactggaagagtgttccggtataatacacttaa                                      <  2:187582‑M1/251‑195 (MQ=255)                                                                                                                                                                                                 aaGAGCAGATTGATAAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagagtgttccggtaaaagacactgaagt                                    >  1:236049‑M1/1‑55 (MQ=255)                                                                                                                                                                                                                   aaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgccaagataaacgattctttttcgattatctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggactcccgttttacctacagttcacagtttggtctgttcgataaagcaggcgactggaagagtgttccggtcaaagacactgaagtggttgaccgcctggagc                   >  1:286515‑M1/1‑37 (MQ=255)                                                                                                                                                                                                                         aCCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagagtgttccggtaaaagacactgaagtggttgaacgactggagcacaccct            >  1:306242‑M1/1‑31 (MQ=255)                                                                                                                                                                                                                                   gCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagagtgttccggtaaaagacactgaagtggttgaacgactggagcacaccctgcgtgagttt  >  2:251980‑M1/1‑21 (MQ=255)                                                                                                                                                                                                                                               gTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgt                                                                                     >  1:311143‑M1/1‑9 (MQ=255)                                                                                                                                                                                                                                               gTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgt                                                                                     <  2:311143‑M1/156‑148 (MQ=255)                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                       TCATCATCTGCTGACGGTAAATTATTAGAGATCCCATTTAACCCGGTGTATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATA  >  NC_000913/257661‑258137

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.