| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,453,992 | G→A | W22* (TGG→TGA) | paaA → | phenylacetyl‑CoA 1,2‑epoxidase, monooxygenase subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,453,992 | 0 | G | A | 95.2% | 52.4 / ‑3.6 | 21 | W22* (TGG→TGA) | paaA | phenylacetyl‑CoA 1,2‑epoxidase, monooxygenase subunit |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (10/10); total (10/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.62e-01 | |||||||||||
CAACTGCGGAAAACATTAATGCACTGATAAATAATGATTTATAAAAATAGGGTGCGAAATCCGTCACAGTTCAAACATACAAAATTTGTGATTTTACTTAACTATTGTGTAACTTTCATAAAACAATGTGATTCGTGTTTTTAATTAATTCACGAAAACTGGAATCGTAAAGGTGATGACGTGA‑CCCAAGAAGAACGCTTTGAGCAACGGATAGCCCAGGAAACGGCTATCGAGCCACAGGACTGGATGCCCGATGCTTACCGAAAGACATTGATCCGCCAGATTGGGCAGCATGCGCACTCCGAGATTGTTGGTATGTTGCCTGAAGGTAACTGGATCACTCGCGCACCAACCTTGCGGCGTAAAGCCATTCTGTTGGCCAAAGTGCAGGATGAAGCCGGTCATGGTCTGTATCTCTATAGCGCCGCCGAAACACTGGGCTGCGCCAGAGAAGACATCTACCAAAAAATGCTCGACGGACGGATG > NC_000913/1453747‑1454232 | cAACTGCGGAAAACATTAATGCCCTGATAAATAATGATTTATTAAAATAGAGAGCGAAATCCGTCACAGTTCAAAAATACAAAATTTGTGATTTTACTTAACTATTGTGTAACTTTCATAAAACAATGTGATTCGTGTTTTTAATTAATTAACGAAAACTGGATTCGTAAAGGTGATGACGTGA‑CCCAAGAAGAACGCTTTTAGCAACGGATAGCCACGGAAATGGCAATCGAGCCAAAGTACTGAATGcc > 2:389342/1‑251 (MQ=255) aatGATTTAAAAAAATAGGGTGCGAAATCCGTCACAGTTCAAACATACAAAATTTGGGATTTTACTTAACTATTGTGTAACTTTCATAAAACAATGGGATTCGTTTTTTTAATTAATTCACGAAAACTGGAAGCGAAAAGGTGATGACGGGA‑CCCAAGAAGAACGCTTTGAGCAACGGATAGCCCAGGAAACGGCTATCGAGCCACAGGACTGAATGCCCGATGCTTACCGAAAGACATTGATCCGCCAg < 1:229198/250‑1 (MQ=255) ccGTCACAGTTCAAACATACAAAATTTGTGATTTTACTTAACTATTGTGTAACTTTCATAAAACAATGTGATTCGTGTTTTTAATTAATTCACGAAAACTGGAATCGTAAAGGTGATGACGTGA‑CCCAAGAAGAACGCTTTGAGCAACGGATAGCCCAGGAAACGGCTATCGAGCCACAGGACTGAATGCCCGATGCTTACCGAAAGACATTGATCCGCCAGATTGGGCAGCATGCGCACTCCGAGAttgt < 1:98033/251‑1 (MQ=255) cGTCACAGTTCAAACATACAAAATTTGTGATTTTACTTAACTATTGTGTAACTTTCATAAAACAATGTGATTCGTGTTTTTAATTAATTCACGAAAACTGGAATCGTAAAGGTGATGACGTGA‑CCCAAGAAGAACGCTTTGAGCAACGGATAGCCCAGGAAACGGCTATCGAGCCACAGGACTGAATGCCCGATGCTTACCGAAAGACATTGATCCGCCAGATTGGGCAGCATGCGCACTCCGAGCttgtt > 2:442617/1‑251 (MQ=255) cAAACATACAAAATTTGTGATTTTACTTAACTATTGTGTAACTTTCATAAAACAATGTGATTCGTGTTTTTAATTAATTCACGAAAACTGGAATCGTAAAGGTGATGACGTGA‑CCCAAGAAGAACGCTTTGAGCAACGGATAGCCCAGGAAACGGCTATCGAGCCACAGGACTGAATGCCCGATGCTTACCGAAAGACATTGATCCGCCAGATTGGGCAGCATGCGCACTCCGAGATTGTTGGTATGTTg < 1:206086/250‑1 (MQ=255) aCATACAAAATTTGTGATTTTACTTAACTATTGTGTAACTTTCATAAAACAATGTGATTCGTGTTTTTAATTAATTAACGAAAACTGGAATCGTAAAGGTGATGACGTGA‑CCCAAGAAGAACGCTTTGAGCAACGGATAGCCCAGGAAACGGCTATCGAGCCACAGGACTGGATGCCCGATGCTTACCGAAAGACATTGATCCGCCAGATTGGGCAGCATGCGCACTCCGAGATTGTTGGTATGTTGCCTg < 1:231535/251‑1 (MQ=255) gATTTTACTTAACTATTGTGTAACTTTCATAAAACAATGTGATTCGTGTTTTTAATTAATTAACGAAAACTGGAATCGTAAAGGTGATGACGTGA‑CCCAAGAAGAACGCTTTGAGCAACGGATAGCCAAGGAAACGGCTATCGAGCCACAGGCCTGAATGCCCGATGCTTACCGAAAGACATTGATCCGCCAGATTGGGCAGCATGCACCCTCCGAGATTGTTGGTATGTTGCCTGAAGGTAACTGGATc > 2:369371/1‑250 (MQ=255) gATTTTACTTAACTAGTGTGTAACATTCATAAAACAATGTGAGTCGTGTTTTTAATTAATTCACGAAAACTGGAAGCGTAAAGGTGATGACGTGA‑CCCAAGAAGAACGCTTTGAGCAACGGATAGCCCAGGAAACGGCTATCGAGCCACAGGACTGAATGCCTGATGCTTACCGAAAGACATTGATCCGCCAGATTGGGCAGCATGCGCACTCCGAGATTGTTGGTATGTTGCCTGAAGGTAACTGGATCa < 2:517722/251‑1 (MQ=255) tATTGAGTAACTTTCATAAAACAATGAGATTCGTGTTTTTAATTAATTCACGAAAACTGGAATAGTAAAGGGGATGACGTGA‑CCCAAGAAGAACGCTTTGAGCAACGGATAGCCCAGGAAACGGCTATCGAGCCACAGGACTGAATGCCCGATGCTTACCGAAAGACATTGATCCGCCAGATTGGGCAGCATGCGCACTCAGAGATTGTTGGTATGTTGCCTGAAGGTAACTGGATCACTCGCGCACCAAc > 1:458095/1‑251 (MQ=255) gATTCGTGTTTTTAATTAATTCACGAAAACGGGAATCGTAAAGGTGATGACGTGA‑CCCAAGAAGAACGCTTTGAGCAACGGATAGCCCAGGAAACGGCTATCGAGCCACAGGACTGAATGCCCGATGCTTACCGAAAGACATTGATCCGCCAGATTGGGCAGCATGCGCACTCCGAGATTGTTGGTATGTTGCCTGAAGGTAACTGGATCACTCGCACACCAACCTTGCGGCGTAAAGCCATTCTGTTGGc < 1:442617/251‑1 (MQ=255) ttCGTGTTTTTAATTAATTCACGACAACTGGAATCGTAAAGGTGATGACGTGA‑CCCAAGAAGAACGCTTTGAGCAACGGATAGCCCAGGAAACGGCTATCGAGCCACAGGACTGAATGCCCGATGCTTACCGAAAGACATTGATCCGCCAGATTGGGCCGCATGCGCCCTCCGAGATTGTTGGTATGTTGCCTGAAGGAAACTGGATCACTCGAGCACCAACCTGGCGGCGTAAAGCCATTCTGTTggac > 2:110045/1‑248 (MQ=255) attaattCCCGAAAACTGAAAGAGTAAAGGTGATGAC‑TGAACTCAAAAAGAACGCTTGGAGCAACGGAAAGCCCAGGAACCGGCTGTCGAGCCACAGGACTGAATGCCCGATGCTTACCGAAAGACATTGATCCGCCAGATTGGGCAGCATGCGCACTCCGAGATTGTTGGTATGTTGCCTGAAGGTAACTGGATCACTCGCGCACCAACCTTGCGGCGTAAAGCCATTCTGTTGGCCAAAGTGCAGGATg < 2:152554/251‑1 (MQ=255) tCACGAAAACTGGAATCGTAAAGGAGATGACGTGA‑CCCAAGAAGAACGCTTTGAGCAACGGATAGCCCAGGAAACGGCTATCGAGCCACAGGACTGAATGCCCGATGCTTACCGAAAGACATTGATCCGCCAGATTGGGCAGCATGCGCACTCCGAGATTGTTGGGATGTTGCCGGAAGGTACCTGGATCACTCGCGACCCAACCTTGCGGCGTAAAGCCATTCTGTTGGACAAAGTTCAGGATGAAGCCg > 2:205158/1‑251 (MQ=255) aaatggaatggTGATGACGTGA‑CCAAGGAAGAACGCTTTGAGCAACGGATATCCCAGGAAACGGTTATCGAGCCACATGACTGAATGCCTGATGCTGACCGAAAGATATTTATCCGCAAGATTGGGCAGTATGCGCACTCCGAGATTGTTGGTATGTTGCCTTAAGGTAACTGGATCATTTGTGCACCAACCTTGCGGCGTAAAGCAATTCTGTTGGCCAAAGTGCAGGATGAAGCCGCTTATGGTCttg < 2:396946/241‑3 (MQ=255) gTAAAGGTGATGACGTGC‑CCCAAGAAGAACGCTTTGAGCAACGGATAGCCCAGGAAACGGCTATCGAGCCACAGGACTGAATGCCCGATGCTTACCGAAAGACATTGATCCGCCAGATTGGGCAGCATGCGCACTCCGAGATTGTTGGTATGTTGCCTGAAGGTAACTGGATCACTCGCGCACCAACCTTGCGGCGTAAAGCCATTCTGTTGGCCAAAGTGCAGGATGAAGCCGGTCATGGTCTGTAtctc > 1:571172/1‑251 (MQ=255) ttGAGCAACGGATAGCCCAGGAAACGGCTATCGAGCCACAGGACTGAATGCCCGATGCTTACCGAAAGACATTGATCCGCCAGATTGGGCAGCATGCGCACTCCGAGATTGTTGGTATGTTGCCTGAAGGTAACTGGATCACTCGCGCACCAACCTTGCGGCGTAAAGCCATTCTGTTGGCCAAAGTGCAGGATGAAGCCGGTCATGGTCTGTATCTCTATAGCGCCGCCGAAACACTGGGCTGCGcc > 1:180774/1‑248 (MQ=255) aaCGGATAGCCCAGGAACGGGCTATCGTGCCACAGGACTGAATGCCCGATGCTTACCGAAAGTCATTGATCCGCCAGATTGGGCAGCATGCGCACTCCGAGATTGTTGGTATGTTGCCTGAAGGTAACTGGATCACTCGCGCACCAACCTTGCGGCGTAAAGCCATTCTGTTGGCCAAAGTGCAGGATGAAGCCGGTCATGGTCTGTATCTCTATAGCGCCGCCGAAACACTGGGCTGCGCCAGAGAAGAc < 2:391553/251‑1 (MQ=255) ttagcacgggaacaggCTATCGAGCAACAGAACTGAATGCCCGATGCTTACCGAAAGACCTTGATCCGCCAGATTGGACAGCATAACCACACCGAGATAGTTGGTATTATGCCTGAGGGTACCTGGATAACTCGCGCACCAACCTTGCGGCGTAAAGCCATTCTGTTGGCCCAAGCGCCGGATGAGGCTGGTCATGGTCTGACTCTCTATAGCGCCGACGAAACACTGGGATGCGCCAGTGCAGACATCt > 2:178505/15‑250 (MQ=255) ggCTATCGAGCCACAGGACTGAATGCCCGATGCTTACCGAAAGACATTGATCCGCCAGATTGGGCAGCATGCGCACTCCGAGATTGTTGGTATGTTGCCTGAAGGTAACTGGATCACTCGCGCACCAACCTTGCGGCGTAAAGCCATTCTGTTGGCCAAGGTGCAGGATGAAGCCGGTCATGGTCTGTATCTCTATAGCGCCGCCGAAACACTGGGCTGCGCCGGAGACGACATCTACCAAAAAATGCTCg > 2:174541/1‑251 (MQ=255) aacGAGCCACAGGACTGAATGCCCGATGCTTACCGAAAGACATTGATCCGCCAGATTGGGCAGCATGCGCACTCCGAGATTGTTGGTATGTTGCCTGAAGGTAACTGGATCACTCGCGCACCAACCTTGCGGCGTAAAGCCATTCTGTTGGCCAAAGTGCAGGATGAAGCCGGTCATGGTCTGTATCTCTATAGCGCCGCCGAAACACTGGGCTGCGCCAGAGAAGACATCTACCAAAAAATGCTCgacgg < 2:180774/249‑1 (MQ=255) caaaGGACTGAATGCCCGAGGCTTACCGAAAGACATTGATCCGCCAGATTGGGCAGCATGCGCACGCCGAGAGTGTTGGTATGTTGCCTGAATGTAACTGGATCACTCGCGCACCAACCTTGCGGCGTAAAGCCATTCTGTTGGCCAAAGTGCAGGATGAAGCCGGGCATGGTCTGTATCGCTATAGCGCAGCCGAAACACTGGGCTGCGCCAGAGAAGACATCTCCCAAAAAATGCTCGACGGACGGATg < 2:42606/248‑1 (MQ=255) | CAACTGCGGAAAACATTAATGCACTGATAAATAATGATTTATAAAAATAGGGTGCGAAATCCGTCACAGTTCAAACATACAAAATTTGTGATTTTACTTAACTATTGTGTAACTTTCATAAAACAATGTGATTCGTGTTTTTAATTAATTCACGAAAACTGGAATCGTAAAGGTGATGACGTGA‑CCCAAGAAGAACGCTTTGAGCAACGGATAGCCCAGGAAACGGCTATCGAGCCACAGGACTGGATGCCCGATGCTTACCGAAAGACATTGATCCGCCAGATTGGGCAGCATGCGCACTCCGAGATTGTTGGTATGTTGCCTGAAGGTAACTGGATCACTCGCGCACCAACCTTGCGGCGTAAAGCCATTCTGTTGGCCAAAGTGCAGGATGAAGCCGGTCATGGTCTGTATCTCTATAGCGCCGCCGAAACACTGGGCTGCGCCAGAGAAGACATCTACCAAAAAATGCTCGACGGACGGATG > NC_000913/1453747‑1454232 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |