| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,335,123 | C→T | intergenic (+294/‑25) | cysB → / → ymiA | DNA‑binding transcriptional dual regulator CysB/uncharacterized protein YmiA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,335,123 | 0 | C | T | 83.3% | 22.9 / ‑2.8 | 12 | intergenic (+294/‑25) | cysB/ymiA | DNA‑binding transcriptional dual regulator CysB/uncharacterized protein YmiA |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base T (5/5); total (6/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TATATTCTCTTTTGTTACTTATTTCTATACCGTGCACAATATTTTTATCCCTCATATTTATAGGGTAAATTACCTGTAAAGTAGTGTCTAATTACCCGCCTCGCAAACTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTCGGTCAGGAGCAACTGGAGTCGTCACCATTATGCCAGCATAGTGACAATGAAACAGAAACGAAACGGGAATGTT > NC_000913/1334877‑1335369 | aatatTTTCTTTTGTTACTTATTTCTATACCGTGCACAAAATTTTTATCCCTCATATTTAAAGGGTAAATTTCCTGTAAAATAGTGTCTAATTACCCGGCTCCCAAACTCCAGTTTTCAAATATCTAGTTCAGGTCAAAAGATTTAATTAATCACTGGAGACGATTCGTAAATTCGCTGTATTTTTGACTAAAGTTGCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTTTTGc < 1:51093/250‑1 (MQ=255) tGTTACTTATTTCTATACCGTGCACAATATTTTTATCCCTCATATTTATAGGGTAAATTACCTGTAAAGTAGTGTCTAATTACCAGCCTCGCAAACTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGAGACGATTCGTCAATTCGCTGGATTTTTGACTACAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAATGTTTTGCTGATATGTGATg > 2:474685/1‑251 (MQ=255) tATTTCTATACCGTGCACAATATTTTTATCCCTCATATTTATAGGGTAAATTTCCTGTAAAGTAGTGTCTAATTACCCGCCTCGCAAACTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTTTTGCTGATAAGTGATGGCGAtt < 1:180978/250‑1 (MQ=255) ttCTATACCGTGCACAATATTTTTATCCCTCATATTTATAGGGTAAATTACCTGTAAAGTAGTGTCTAATTACCCGCCTCGCAAACTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTTTTGCTGATAAGTGATGGCGATTatat > 1:345964/1‑251 (MQ=255) ccGTGCACAATATTTTTATACCTCATATTTATAGGGTAAATTACCTGTAAAGTAGAGTCTAATTACCCGCCTCGCAAACTCCAGTTTTCAAAAATCTATTTCAGGTCAAAAGATTGCATTCTTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGAATAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTATTTACACACATCGTTCACCGTTTTGCTGATAAGTGTTGTCGATTATATGAGGtt > 2:43121/1‑250 (MQ=255) tttATCCCTCATATTTATAGGTGAAAGTACCTGTAAAGTAGTTTCTAATTACCCGCCTCGCAAACTCCAGTGTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCGGATAAGTGATGGCGATTATATGACGTTAGCAATGCCTTCTg < 2:104276/250‑1 (MQ=255) tatTTATAGGGTAAATTACCTGTAAAGTCGTGTCTAATTACCCGCCTCGCAAACTCAAGTTTTCAAATATCTCTTTCAGGTCAAAAGATTGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAGTTACACCAATCGATCAACGTCTTGCTGTTAAGTGATGGCGTTTATATGAGGTTAGCAATGCCTTGTGGCAATCAGGatc > 2:558773/1‑249 (MQ=255) cAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTTTTGCTGATAAGTGATGGCGATTATAGGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACtt < 1:305129/250‑1 (MQ=255) cTATTTCAGGTCAAAAGATTGAATTATTCACTGGAGACGATTCGTTAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTTTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTTGTTCTGCACTTTTCttggg > 1:90444/1‑247 (MQ=255) gACTAAAGTTTCTTTAGGATTTTTCTCATCGTATGATTAATTACACCAATCGTTCAACGTTTGGCTGATAAGTGATGGCGATTATAGGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTCGGTCAGGAGCAACTgg < 1:233286/250‑1 (MQ=255) tttAGGATTTGTCTCATCGTATGATTAAATACACCAATCGTTCAACGTTTTGCTGATAAGTGATTGCGATTATATGAGGTAAGAAATGCCTTCTGGAACTCAGGAACACCTCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTGTTTCTTGGTTTTGCAATTATATGGGAGGATGTCGCACTGGTGGTTTAGAAAGAGTGGGGAAAACTGTGGACGGTTAGGAGCAACAGGAGTAGTGACCAtt > 2:14824/1‑251 (MQ=255) aCGTTTTGCTGATAAGTGAGGGCGATTATTTGGGTTTAGCAAGGTCTTCGGGAAATCAGAAATGCCGCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGGTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTCGGTGAGGAGCAACTGGAGTCGTCACCATTATGCCAGCATAGTGACAATGAAACAGAAACGAAACGGGAATGtt < 1:369711/251‑1 (MQ=255) | TATATTCTCTTTTGTTACTTATTTCTATACCGTGCACAATATTTTTATCCCTCATATTTATAGGGTAAATTACCTGTAAAGTAGTGTCTAATTACCCGCCTCGCAAACTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTCGGTCAGGAGCAACTGGAGTCGTCACCATTATGCCAGCATAGTGACAATGAAACAGAAACGAAACGGGAATGTT > NC_000913/1334877‑1335369 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |