| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,290,669 | G→A | W143* (TGG→TAG) | rssB → | regulator of RpoS |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,290,669 | 0 | G | A | 95.0% | 53.3 / ‑3.5 | 20 | W143* (TGG→TAG) | rssB | regulator of RpoS |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (15/4); total (16/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.53e-01 | |||||||||||
ACGAATGAACGGGCTTAAACTGCTGGAGCATATACGTAACAGAGGCGACCAGACCCCAGTTCTGGTGATATCTGCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGAAACCAGTTAAAGATCTGAATCGCTTGCGCGAGATGGTTTTTGCCTGTCTCTATCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGGCTTTTTCGCGACTGGGATGCAATGGTTGATAACCCTGCCGCAGCGGCGAAATTATTACAGGAACTACAACCGCCGGTTCAGCAGGTGATTTCCCATTGCCGGGTTAATTATCGTCAATTGGTTGCCGCGGACAAACCCGGCCTGGTGCTTGATATTGCCGCACTTTCGGAAAACGATCTGGCATTTTATTGCCTTGATGTCACCCGAGCTGGACATAATGGCGTACTTGCTGCCTTGTTATTAC > NC_000913/1290427‑1290899 | cctcaTGAAAGGGCTTAAATGGCTTGATCATATACTGATCGGAGGCGACCGGACTCCAGTTCTGGTGATAGCTGACGCGGAAAATATGGCAGATATTGCCAAAGCGTGTCGTCTGGGCGTTGAATATGTGTTGCTGAATCCAGTTTAAGATATGAATCGCTTGCGCGAGATGGTTTTTTCCGGTCTCTATCCCAGCATGTTTAATGCGCGCGTTGAGGAAGAGGAAAGGCTTTTTCGCGACTAGGATGCaa < 2:189665/247‑1 (MQ=255) ggCTTAAACTGCTGGAGCATATACGTATCAGAGGCGACCAGACCCCAGTTCTGGTGATATCGGCCACGGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGAAACCAGTTAAAGATCTGAATCGCTTGCGCGAGATGGGTTTTGCCTGCCTCTATCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGGCTTTTTCGCGACTAGGATGCAATGGTTGATAAc < 2:381434/251‑1 (MQ=255) cAGAGGCGACCAGACCCCAGTTCTGGTGATATCTGCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGAAACCAGTTAAAGATCTGAATCGCTTGCGCGAGATGGTTTTTGCCTGTCTCTATCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGCAAGGCTTTTTCGCGACTAGGATGCAATGGTTGATAACCCTGCCGCAGCGGCGAAATTATTACAgg > 2:483584/1‑251 (MQ=255) gagGCGACCAGACCCCAGTTCTGGTGATATCTGCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGAAACCAGTTAAAGATCTGAATCGCTTGCGCGAGATGGTTTTTGCCTGTCTCTATCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGGCTTTTTCGCGACTAGGATGCAATGGTTGATAACCCTGCCGCAGCGGCGGAATTATTACAGGa > 2:67863/1‑250 (MQ=255) gagGCGACCAGACCCCAGTTCTGGTGATATCTGCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGAAACCAGTTAAAGATCTGAATCGCTTGCGCGAGATGGTTTTTGCCTGTCTCTATCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGGCTTTTTCGCGACTAGGATGCAATGGTTGATAACCCTGCCGCAGCGGCGAAATTATTACAGGa < 1:67863/250‑1 (MQ=255) ccAGACCCCAGTTCTGGTGATATCTGCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGAAACCAGTTAAAGATCTGAATCGCTTGCGCGAGATGGTTTTTGCCTGTCTCTATCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGGCTTTTTCGCGACTGGGATGCAATGGTTGATAACCCTGCCGCAGCGGCGAAATTATTACAGGAACTACAAc > 1:123919/1‑251 (MQ=255) aGACCCCAGTTCTGGTGATATCTGCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGAAACCAGTTAAAGATCTGAATCGCTTGCGCGAGATGGTTTTTGCCTGTCTCTATCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGGCTTTTTCGCGACTAGGATGCAATGGTTGATAACCCTGCCGCAGCGGCGAAATTATTACAGGAACTACAAccg > 1:302798/1‑251 (MQ=255) atGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGAAACCAGTTAAAGATCTGAATCGCTTGCGCGAGATGGTTTTTGCCTGTCTCTATCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGGCTTTTTCGCGACTAGGATGCAATGGTTGATAACCCTGCCGCAGCGGCGAAATTATTACAGGAACTACAACAGCCGGTTCAGCAGGGGATTTCCCATTGCCGGGTTa > 2:529947/1‑250 (MQ=255) aGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGAAACCAGTTAAAGATCTGAATCGCTTGCGCGAGATGGTTTTTGCCTGTCTCTATCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGGCTTTTTCGCGACTAGGATGCAATGGTTGATAACCCTGCCGCAGCGGCGAAATTATTACAGGAACTACAACCGCCGGTTCAGCAGGTGATTTCCCATTGCCGGGTTAATTATCGTCAATTGGTTg > 1:343106/1‑251 (MQ=255) cTGGGCGTTGAAGATGTTTTGCTGAAACCAGTTAAAGATCTGAATCGCTTGCGCGAGATGGTTTTTGCCTGTCTCTATCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGGCTTTTTCGCGACTAGGATGCAATGGTTGATAACCCTGCCGCAGCGGCGAAATTATTACAGGAACTAc < 1:193871/184‑1 (MQ=255) cTGGGCGTTGAAGATGTTTTGCTGAAACCAGTTAAAGATCTGAATCGCTTGCGCGAGATGGTTTTTGCCTGTCTCTATCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGGCTTTTTCGCGACTAGGATGCAATGGTTGATAACCCTGCCGCAGCGGCGAAATTATTACAGGAACTAc > 2:193871/1‑184 (MQ=255) gTTGAAAATGATTTGCTGAAACCAGTTAAAGATCTGAATCGCTTGCGCGAGTTGGTTTTTGCCTGTCTCTATCCAAGCATGTTTAATTCGCGCGTTGTGGAAGAGGACCGGCTTTTTCGCGACTAGGATGCAATGGTTGATAACCCTGCCGCAGCGGCGAATTTATTACAGGAACTACAACCGCCGGTTCAGCAGGCGATTTCCCATTGCCGGGTTAATTATCGTCAATTGGTTGCAGCGGACCAACCCgg > 2:99872/1‑251 (MQ=255) ttttGCTGAAACCAGTTAAAGATCTGAATCGCTTGCGCGAGATGGTTTTTGCCTGTCTCTATCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGGCTTTTTCGCGACTAGGATGCAATGGTTGATAACCCTGCCGCAGCGGCGAAATTATTACAGGAACTACAACCGCCGGTTCAGCAGGTGATTTCCCATTGCCGGGTTAATTATCGTCAATTGGTTGCCGCGGACAAACCCGGCCTGGTGCtt > 1:214715/1‑251 (MQ=255) ttCTGAATCGCTTGCGCGTGATGGATTTTGCTTGTCTCTATCCCAGCATGTTTAATTCGCGCGTTGAGGATGAGGAAAGGCTTTTTAGCGACTAGGATGCAAAGATTGATAACCATGCCACAGCGGCTAAATTATTACAGGAACAACAACCGCCGGTTCAGCAGGTAATTTCCCATTACCAGGTTAATTATCGTCACTTGTTTACCGAGGACAATCCTGGCCTGGGGATTGTTATTTCTGAACTTTCggt > 2:97582/2‑249 (MQ=255) aTCTGAATAGCTTGCGCGAGATGGTTTTTGCCTGTCTCTATCCCAGCCTGTTTAATTCGCGCGTTGAGGAAGAGGAAAGGCTTTTTCGCGACTAGGATGCAATGGTTGATAACCCTGCCGCAGCGGCGAAATTATTACAGGTACTACAACCGCCGGTTCAGCAGGTGATTTCCCATTGCCGGGTTAATTATCGTCATTAGGTTGCCGCGGCCAAACCCGACCTGGTGCTTGATATTGCAGCACTTTCggt > 2:201460/1‑249 (MQ=255) ctctATCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGGCTTTTTCGCGACTAGGATGCAATGGTTGATAACCCTGCCGCAGCGGCGAAATTATTACAGGAACTACAACCGCCGGTTCAGCAGGTGATTTCCCATTGCCGGGTTAATTATCGTCAATTGGTTGCCGCGGACAAACCCGGCCTGGTGCTTGATATTGCCGCACTTTCGGAAAACGATCTGGCATTTTATTGCCTTGATGTCACCCg > 1:178717/1‑251 (MQ=255) cgcgcgTTGAGGAAGAGGAACGGCTTTTTCGCGACTAGGATGCAATGGTTGATAACCCTGCCGCAGCGGCGAAATTATTACAGGAACTACAACCGCCGGTTCAGCAGGTGATTTCCCATTGCCGGGTTAATTATCGTCAATTGGTTGCCGCGGACAAACCCGGCCTGGTGCTTGATATTGCCGCCCTTTCGGAAAACGATCTGGCCTTTTATTGCCTTGATGTCACCCGAGCTGGAAATAATGGc > 2:7780/1‑245 (MQ=255) cgcgcgTTGAGGAAGAGGAAAGGCTTTTTCGCGACTAGGATGCAATGGTTGATAACCCTGCCGCAGCGGCGAAATTATTACAGGAACTACAACCGCCGGTTCAGCAGGTGATTTCCCATTGCCGGGTTAATTATCGTCAATTGGTTGCCGCGGACAAACCCGGCCTGGTGCTTGATATTGCCGCACTTTCGGAAAACGATCTGGCATTTTATTGCCTTGATGTCACCCGAGCTGGACATAATGGCGTACtt > 1:135618/1‑251 (MQ=255) gcgTTGAGGAAGAGGAAAGGCTTTTTCGCGACTAGGATGCAATGGTTGATAACCCTGCCGCAGCGGCGAAATTATTACAGGAACTACAACCGCCGGTTCAGCAGGTGATTTCCCATTGCCGGGTTAATTATCGTCAATTGGTTGCCGCGGACAAACCCGGCCTGGTGCTTGATATTGCCGCACTTTCGGAAAACGATCTGGCATTTTATTGCCTTGATGTCACCCGAGCTGGACATAATGGCGTACTtgct > 1:505415/1‑251 (MQ=255) ggaaAGGCTTTTTCGCGACTAGGATGCAATGGTTGATAACCCTGCCGCAGCGGCGAAATTATTACAGGAACTACAACCGCCGGTTCAGCAGGTGATTTCCCATTGCCGGGTTAATTATCGTCAATTGGTTGCCGCGGACAAACCCGGCCTGGTGCTTGATATTGCCGCACTTTCGGAAAACGATCTGGCATTTTATTGCCTTGATGTCACCCGAGCTGGACATAATGGCGTACTTGCTGCCTTGTTATTAc > 1:262310/1‑251 (MQ=255) | ACGAATGAACGGGCTTAAACTGCTGGAGCATATACGTAACAGAGGCGACCAGACCCCAGTTCTGGTGATATCTGCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGAAACCAGTTAAAGATCTGAATCGCTTGCGCGAGATGGTTTTTGCCTGTCTCTATCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGGCTTTTTCGCGACTGGGATGCAATGGTTGATAACCCTGCCGCAGCGGCGAAATTATTACAGGAACTACAACCGCCGGTTCAGCAGGTGATTTCCCATTGCCGGGTTAATTATCGTCAATTGGTTGCCGCGGACAAACCCGGCCTGGTGCTTGATATTGCCGCACTTTCGGAAAACGATCTGGCATTTTATTGCCTTGATGTCACCCGAGCTGGACATAATGGCGTACTTGCTGCCTTGTTATTAC > NC_000913/1290427‑1290899 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |