| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,282,627 | C→T | Q922* (CAG→TAG) | narG → | nitrate reductase A subunit alpha |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,282,627 | 0 | C | T | 89.3% | 69.0 / ‑4.2 | 30 | Q922* (CAG→TAG) | narG | nitrate reductase A subunit alpha |
| Reads supporting (aligned to +/- strand): ref base C (2/0); major base T (6/19); minor base A (1/2); total (9/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CATCGTCACGCTGCCTATCCAGCATGACTCTGCCGCTGAACTGGCGCAGCCGCTGGATGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTATCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGTAAA‑GGGATTGCCTGGAACACCCAGAGCGAGATGGATCTGCTGCGTAAGCTCAACTACACCAAAGCGGAAGGTCCGGCGAAAGGCCAGCCGATGCTGAACACCGCAATTGATG‑CGGCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCA‑GGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGA‑ATTTACCGGTCGTGACCATACGCATCTGGCGCTGAATAAAGAAGACGAGAAGATCCGCTTCCGCGATATTC > NC_000913/1282404‑1282864 | cATCGTCACGCTGCCTATCCAGCATGACTCTGCCGCTGAACTGGCGCAGCCGCTGGATGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTATCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGTAAA‑AGGAGTGCCCGGGACACCCagaaggggaagggtctgctggggcaac > 1:502025/1‑227 (MQ=255) gAACTGGCGCAGCCGCTGGATGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTATCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGTAAA‑GGGATTGCCTGGAACACCTAGAGCGAGATGGATCTGCTGCGTAAGCTCAACTACACCAAAGCGGAAGGTCCGGCGAAAGGCCa < 1:113231/251‑1 (MQ=255) cgcAGCCGCTGGATGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTATCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGTAAAAGGGAT‑GCCTGGGACACCAAGAACGAGAAGGATCTGCTGCGTAAGCTCAACTACCACAAAACGGAAGGTCCGGCGGAAGGGCAGCCggtg > 1:310758/1‑248 (MQ=255) cGCTGGATGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATTCCAGGTAAAACCGCGACACATTTTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTATCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGTAAA‑GGGATTGCCTGGAACACCTAGAGCGAGATGGATCTGCTGCGTAAGCTCAACTACACCAAAGCGGAAGGTCCGGCGAAAGGCCAGCCGATGCTGAac < 2:419866/251‑1 (MQ=255) cGCTGGATGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTATCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGTAAA‑GGGATTGCCTGGAACACCTAGAGCGAGATGGATCTGCTGCGTAAGCTCAACTACACCAAAGCGGAAGGTCCGGCGAAAGGCCAGCCGATGCTGAac < 1:334330/251‑1 (MQ=255) ggATGAGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAACCCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTATCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGTAAA‑GGGATTGCCTGGAACACCTAGAGCGAGATGGATCTGCTGCGTAAGCTCAACTACTCCAAAGCGGAAGGTCCGGCGAAAGGCCAGCCGATGCTGAacac < 2:328187/249‑1 (MQ=255) aaaaaGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGTCACACATTATGGTCGTAGAGCGCGAGTATCCGGCGACTTACGAACGCTTTACCTCTATCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGTAAA‑GGGATTGCCTGGAACACCTAGAGCTAGATGGATCTGCTGCGTAAGCTCAACTACACCAAAGCGGAAGGTCCGGCGAAAGGCCAGCCGATGCTGAACACCGCAATTGATG‑CGGCagag < 1:99649/251‑1 (MQ=255) aaaGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTATCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGTAAA‑GGGATTGCCTGGAACACCTAGAGCGAGATGGATCTGCTGCGTAAGCTCAACTACACCAAAGCGGAAGGTCCGGCGAAAGGCCAGCCGATGCTGAACACCGCAATTGATG‑CGGCAGAgat < 1:178114/251‑1 (MQ=255) ggCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTATCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGTAAA‑GGGATTGCCTGGAACACCTAGAGCGAGATGGATCTGCTGCGTAAGCTCAACTACACCAAAGCGGAAGGTCCGGCGAAAGGCCAGCCGATGCTGAACACCGCAATTGATG‑CGGCAGAgatgat < 1:295603/251‑1 (MQ=255) ggCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTATCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGTAAA‑GGGATTGCCTGGAACACCTAGAGCGAGATGGATCTGCTGCGTAAGCTCAACTACACCAAAGCGGAAGGTCCGGCGAAAGGCCAGCCGATGCTGAACACCGCAATTGATG‑CGGCAGAgatgat < 2:131922/251‑1 (MQ=255) gAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTATCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGTAAA‑GGGGTTGGCCGGAACACCTAGAGCGAGATGGGGCTGCTGGGTAAGCTCAACTACACCAAAACGGAAGGGCCGGCGAAAGGCCCGCCCATGCTGAACACCCCCATTGATG‑CGGCCGAgaagatacc > 1:320348/1‑248 (MQ=255) gACCTGATCCCAGGTAAAACCTCGCCAAACATTATGTGCGCAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTATCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGTAAA‑GGGATTGCCTGGAACACCTAGAGCGAGATGGATCTGCTGCGTAAGCTCAACTACACCAAAGCGGAAGGTCCGGCGAAAGGCCAGCCGATGCTGAACACCGCAATTGATG‑CGGCAGAGATGATCCTGACACt < 2:564398/251‑1 (MQ=255) aTCCAAGGTAAAACCGCGCCACACATTATGTTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTATCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGTAAA‑GGGATTGCCTGGAACACCTAGAGCGAGATGGATCTGCTGCGTAAGCTCAACTACACCAAAGCGGAAGGTCCGGCGAAAGGCCAGCCGATGCTGAACACCGCAATTGATG‑CGGCAGAGATGATCCTGACACTGGCAcc < 2:149627/251‑1 (MQ=255) aTTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTATCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGTAAA‑GGGATTGCCTGGAACACCTAGAGCGAGATGGATCTGCTGCGTAAGCTCAACTACACCAAAGCGGAAGGTCCGGCGAAAGGCCAGCCGATGCTGAACACCGCAATTGATG‑CGGCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCA‑GGTAGCCGt < 1:521242/251‑1 (MQ=255) cacgccgcgctgccgatctcGACGTACGAACGTTTTACCTCTATCGGCCCGCTGATGGAGAAAAACGGTAATGGCGGTAAA‑GGGATTGCCTGGAACACCTAGAGCGAGATGGATCTGCTGCGTAAGCTCAACTACACCAAAGCGGAAGGTCCGGCGAAAGGCCAGCCGATGCTGAACACCGCAATTGATG‑CGGCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCA‑GGTAGCCGTGAAAGCCTg < 2:265737/232‑1 (MQ=255) aTCCGGCGACTTACGAACGCTTTACCTCTATCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGTAAA‑AGGATTGCCCGGGACACCTAGAGCGAGATGGATCTGCGGCGGAAGCTCAAATACACCACAGAGGAAAGTCCGGCGGAAGGGCAGCCGGGGCTGAACACCGCAATTGAAGTGGGCAGA‑AGGATCCTGACCCCGGACCCGGACACCAACGGTCAAGGAGGCCG‑GAAAGCCTGGGGTGCCCCGAGc > 1:301007/1‑251 (MQ=255) ggCGACTTACGAACGCTTTACCTCTATCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGTAAA‑GGGATTGCCTGGAACACCTAGAGCGAGATGGATCTGCTGCGTAAGCTCAACTACACCAAAGCGGAAGGTCCGGCGAAAGGCCAGCCGATGCTGAACACCGCAATTGATG‑CGGCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCA‑GGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGA‑At < 1:350737/251‑1 (MQ=255) gCTTTACCTCTATCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGTAAA‑GGGATTGCCTGGGACACCTAGAGCGAGATGGGTCTGCTGCGTAAGCTCAACTACACCAAAGAGGAAGGGCCGGCGCAAGGCCAGCCGATGCTGAACACCGCAATTTATG‑CGGCAGAGATGATCCTGACACTGGCACCGGGAAACAACGGGCA‑GGGAGCCGTGAAAGCCTGGGCCGCCCTTAGCGA‑ATTTACCGGTCggggc > 1:298315/1‑247 (MQ=255) tACCGCTATCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGTAAA‑GGGATTGCCTGGAACACCTAGAGCGAGATGGATCTGCTGCGTAAGCTCAACTACACCAAAGCGGAAGGACCGGCGAAAGGCCAGCCTATGCTGAACACCGCAATTGATG‑CGGCAGAGATGATCCTg < 2:510670/172‑1 (MQ=255) tATCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGTAAA‑GGGGTTTCCTGGAACACCTAGAGCGAGATGGATCTGCTGCGTAAGCTCAACTACACCAAAACGGAAGGGCCGGCGAAAGGGCAGCCGATGCTGAACACCGCAATTGATG‑CGGCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCA‑GGTAGCCGTGGAAGCCTGGGCTGCCCTGAGCGG‑ATTTACCGGTCGGGACCATACGCATc > 1:347423/1‑251 (MQ=255) aTCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGTAAA‑GGGATTGCCTGGAACACCTAGAGCGAGATGGATCTGCTGCGTAAGCTCAACTACACCAAAGCGGAAGGTCCGGCGAAAGGCCAGCCGATGCTGAACACCGCAATTGATG‑CGGCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCA‑GGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGA‑ATTTACCGGTCGTGACCATACGCAt < 1:293756/249‑1 (MQ=255) ggCCCGCTGATGGAGAAAATCGGTAATGGCGGTAAA‑GGGATTGCCTGGAACACCTAGAGCGAGATGGATCTGCTGCGTAAGCTCAACTACACCAAAGCGGAAGGTCCGGCGAAAGGCCAGCCGATGCTGAACACCGCAATTGATG‑CGGCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCA‑GGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGA‑ATTTACCGGTCGTGACCATACGCATCTGgc < 1:8358/251‑1 (MQ=255) cccGCTGATGGAGAAAATCGGTAATGGCGGTAAA‑GGGATTTCCTGGGACACCCAGAGAGAGGTGGATCTGCTGCGTAAGGTCAACCAAAACAAAGCGGAAGGTCCGGCGGAAGGCCAGCCGGTGCTGAACACCGCAATTTATG‑GGGCAGAGATGAACCTTACACTGGCCCCGGAAAACAACGGGCA‑GGGAGCCGGGAAAGCCCGGGCGTCCCTGAGCGAGATTTAcgggcgggacccaacgcctctggggc > 1:524823/1‑226 (MQ=255) aTGGCGGTAAA‑GGGATTGCCTGGAACACCTAGAGCGAGATGGATCTGCTGCGTAAGCTCAACTACACCAAAGCGGAAGGTCCGGCGAAAGGCCAGCCGATGCTGAACACCGCAATTGATG‑CGGCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCA‑GGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGA‑ATTTACCGGTCGTGACCATACGCATCTGGCGCTGAATAAAGAAGACGAGAAGATc < 1:213111/251‑1 (MQ=255) gCGGTAAA‑GGTATGGCCTGGAACACCTGGAGCGAGAGGGATCTGCTGCGTAAGCACAACTACCCCAAAGCGGAAGGTCCGGCGAAAGGCCAGCCGATGCTGAACACCGCAATTGATG‑CGGCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCA‑GGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGA‑ATTTACCGGTCGTGACCATACGCATCTGGCGCTGAATAAAGAAGACGAGAAGATCCGc < 2:447792/251‑1 (MQ=255) tAAA‑GGGATTGCCTGGAACACCTAGAGCGAGATGGATCTGCTGCGTAAGCTCAACTACACCAAAGCGGAAGGTCCGGCGAAAGGCCAGCCGATGCTGAACACCGCAATTGATG‑CGGCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCA‑GGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGA‑ATTTACCGGTAGTGACCATACGCATCTGGCTCGGAATAAAGAAGAAGAGAAGATCCGCTTcc > 2:443023/1‑251 (MQ=255) ggATTGCCTGGAACACCAAGAGCGAGATGGATCTGCTGCGTAAGCTCAACTACACCAAAGCGGAAGGTCCGGCGAAAGGCCAGCCGATGCTGAACACCGCAATTGATG‑CGGCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCA‑GGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGA‑ATTTACCGGTCGTGACCATACGCATCTGGCGCTGAATAAAGAAGACGAGAAGATCCGCTTCCGCGat < 1:487373/251‑1 (MQ=255) tGCCTGGACCACCAAGAGCGTGATGGATCTGCTGCGTAAGCTCAACCACCCCAACGCGGAAGGTCCGGCGAAATGCCAGCCGATGCTGAACACCGCAATTGATG‑CGGCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGGCA‑GGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGA‑ATTTACCGGTCGTGACCATACGCATCTGGCGCTGAATAAAGAAGACGAGAAGATCCGCTTCCGCGatata < 2:298315/250‑2 (MQ=255) tGCCTGGAACACCTAGAGCGAGATGGATCTGCTGCGTAAGCTCAACTACACCAAAGCGGAAGGTCCGGCGAAAGGCCAGCCGATGCTGAACACCGCAATTGATG‑CGGCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCA‑GGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGA‑ATTTACCGGTCGTGACCATACGCATCTGGCGCTGAATAAAGAAGACGAGAAGATCCGCTTCCGCGATAtt < 1:528225/250‑1 (MQ=255) tGCCTGGAACACCTAGAGCGAGATGGATCTGCTGCGTAAGCTCAACTACACCAAAGCGGAAGGTCCGGCGAAAGGCCAGCCGATGCTGAACACCGCAATTGATG‑CGGCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCA‑GGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGA‑ATTTACCGGTCGTGACCATACGCATCTGGCGCTGAATAAAGAAGACGAGAAGATCCGCTTCCGCGATATTc > 1:233554/1‑251 (MQ=255) | CATCGTCACGCTGCCTATCCAGCATGACTCTGCCGCTGAACTGGCGCAGCCGCTGGATGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTATCGGCCCGCTGATGGAGAAAATCGGTAATGGCGGTAAA‑GGGATTGCCTGGAACACCCAGAGCGAGATGGATCTGCTGCGTAAGCTCAACTACACCAAAGCGGAAGGTCCGGCGAAAGGCCAGCCGATGCTGAACACCGCAATTGATG‑CGGCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCA‑GGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGA‑ATTTACCGGTCGTGACCATACGCATCTGGCGCTGAATAAAGAAGACGAGAAGATCCGCTTCCGCGATATTC > NC_000913/1282404‑1282864 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |