| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 76,249 | G→A | Q351* (CAA→TAA) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 76,249 | 0 | G | A | 98.5% | 211.9 / NA | 66 | Q351* (CAA→TAA) | sgrR | DNA‑binding transcriptional dual regulator SgrR |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (31/34); minor base T (0/1); total (31/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGCGTGACCTGGTGACTTGCCAGAATCTGCTGCATGATCCCGGCAATCACCCGATGCTCACTGTGATCCTGATAAAAGGTTAGGGTGAGGCTTTCCAGGCCAGCCGGTTTTTCGCTCTTTATGGTGCGGGCATGGTGCCAACGGGGGAGCAGTCCATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTGCTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCTTTCAATCTCTTTTTCCTCGCCCTGTGGACCTTTTAGCATCAGCCCTCCGGCTGGCTCGTCGGCAATTTCCGGCAGAACCCAGACGTTAACTTCGTCGATTAATGCCCGGTAACCGAAGAAGTCATCGAATGCCTGAATTTTCAGTTGATTGGTGCTGTTGCGAATCACCGCATACGG > NC_000913/76002‑76492 | atcGTGACCTGGGGACTGGCCAGAATCTGCGGCATGATCCCGGCAATCACCCGATGCTCACTGTGATCCTGATAAAAGGTTAGGGTGAGGCTTTCCAGGCCAGCCGGTTTTTCGCTCTTTATGGTGCGGGCATGGTGCCAACGGGGGAGCAGTCCATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTg < 2:478268/249‑1 (MQ=255) gACCTGGTGACTTGCCAGAATCTGCTGCATGATCCCGGCAATCACCCGATGCTCACTGTGATCCTGATAAAAGGTTAGGGTGAGGCTTTCCAGGCCAGCCGGTTTTTCGCTCTTTATGGTGCGGGCATGGTGCCAACGGGG‑AGCAGTCCATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGc > 1:53906/1‑251 (MQ=255) ggTGACTTGCCAGAATCTGCTGCATGATCCCGGCAATCACCCGATGCTCACTGTGATCCTGATAAAAGGTTAGGGTGAGGCTTTCCAGGCCAGCCGGTTTTTCGCTCTTTATGGTGCGGGCATGGTGCCAACGGGGGAGCAGTCCATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCcg > 1:493077/1‑251 (MQ=255) gACTTGCCAGAATCTGCTGCATGATCCCGGCAATCACCCGATGCTCACTGTGATCCTGATAAAAGGTTAGGGTGAGGCTTTCCAGGCCAGCCGGTTTTTCGCTCTTTATGGTGCGGGCATGGTGCCAACGGGGGAGCAGTCCATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCcgcg > 1:161669/1‑250 (MQ=255) ccgcgcttccgatctgcATGATCCCGGCAATCACCCGATGCTCACTGTGATCCTGATAAAAGGTTAGGGTGAGGCTTTCCAGGCCAGCCGGTTTTTCGCTCTTTATGGTGCGGGCATGGTGCCAACGGGGGAGCAGTCCATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATgg < 2:262807/238‑1 (MQ=255) gCCAGAATCTGCTGCATGATCCCGGCAATCACCCGATGCTCACTGTGATCCTGATAAAAGGTTAGGGTGAGGCTTTCCAGGCCAGCCGGTTTTTCGCTCTTTATGGTGCGGGCATGGTGCCAACGGGGGAGCAGTCCATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATgggg > 1:372137/1‑250 (MQ=255) tctgcATGATTCCGGCAATCACCCGATGCTCACTGTGATCCTGATAAAATGTTAGGGTGAGGCTTTCCGGGCCAGCCGGTTTTTCGCGCTGTATGGTGCGGGCATGGTGCCAACGGGGGAGCAGTCCATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCGGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTc < 2:335183/249‑1 (MQ=255) gctgcATGATCCCGGCAATCACCCGATGCTCACTGGGATCCTGATAAAAGGTTAGGGTGAGGCTTTCCAGGCCAGCCGGTTTTTCGCTCTTTATGGTGCGGGCATGGTGCCAACGGGGGAGCAGTCCATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTc < 2:161669/250‑1 (MQ=255) gcATGATCCCGGCAATCACCCGATGCTCACTGTGATCCTGATAAAAGGTTAGGGTGAGGCTTTCCAGGCCAGCCGGTTTTTCGCTCTTTATGGTGCGGGCATGGTGCCAACGGGGGAGCAGTCCATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATgg > 1:262807/1‑236 (MQ=255) aTCCCGGCAATCACCCGATGCTCACTGTGATCCTGATAAAAGGTTAGGGTGAGGCTTTCCAGGCCAGCCGGTTTTTCGCTCTTTATGGTGCGGGCATGGTGCCAACGGGGGAGCAGTCCATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTa > 1:186397/1‑250 (MQ=255) cGGCAATCACCCGATGCTCACTGTGATCCTGATAAAAGGTTAGGGTGAGGCTTTCCAGGCCAGCCGGTTTTTCGCTCTTTATGGTGCGGGCATGGTGCCAACGGGGGAGCAGTCCATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGCAATAGACCAGCTTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGACCAGTAAAt > 2:210648/1‑249 (MQ=255) ggCAATCACCCGATGCTCACTGTGATCCTGATAAAAGGTTAGGGTGAGGCTTTCCAGGCCAGCCGGTTTTTCGCTCTTTATGGTGCGGGCATGGTGCCAACGGGGGAGCAGTCCATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAAta‑gt > 1:67678/1‑251 (MQ=255) cACCCGATGATCACTGTGATCCTGATAAAAGGTTAGGGTGAGGCTTTCCAGGCCAGCCGGTTTTTCGCTCTTTATGGTGCGGGCATGGTGCCAACGGGGGAGCAGTCCATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAAACGTAAATA‑ATAGCAAc > 2:527078/1‑251 (MQ=255) cGATGCTCACTGTGATCCTGATAAAAGGTTAGGGTGAGGCTTTCCAGGCCAGCCGGTTTTTCGCTCTTTATGGTGCGGGCATGGTGCCAACGGGGGAGCAGTCCATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAACTAGACCAGATTAGTTGGCGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATGCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑ATAGCAAC‑CTtc > 2:495650/1‑251 (MQ=255) aTGCTCACTGTGATCCTGATAAAAGGTTAGGGTGAGGCTTTCCAGGCCAGCCGGTTTTTCGCTCTTTATGGTGCGGGCATGGTGCCAACGGGGGAGCAGTCCATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTtcct > 1:29295/1‑251 (MQ=255) cACTGTGATCCTGATAAAAGGTTAGGGTGAGGCTTTCCAGGCCAGCCGGTTTTTCGCTCTTTATGGTGCGGGCATGGTGCCAACGGGGGAGCAGTCCATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAgg < 1:204490/251‑1 (MQ=255) cACTGTGATCCTGATAAAAGGTTAGGGTGAGGCTTTCCAGGCCAGCCGGTTTTTCGCTCTTTATGGTGCGGGCATGGTGCCAACGGGGGAGCAGTCCATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAg < 1:242918/250‑1 (MQ=255) gATCCTGATAAAAGGTTAGGGTGAGGCTTTCCAGGCCAGCCGGTTTTTCGCTCTTTATGGTGCGGGCATGGTGCCAACGGGGGAGCAGTCCATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCtt > 1:459670/1‑251 (MQ=255) ggTTAGGGTGAGGCTTTCCAGGCCAGCCGGTTTTTCGCTCTTTATGGTGCGGGCATGGTGCCAACGGGGGAGCAGTCCATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTTCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCTTTCAATCTCttttt < 1:224510/251‑1 (MQ=255) ggTTAGGGTGAGGCTTTACAGGCCATCCGGTGTTGCGCTCTTTATGGTGCGGGCATGGTGCCAACGGGGGAGCAGTCCATAAGACGGGAACCACAGTTGCTGGGACTGTTCCTCAGCGAAAGAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCGGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCTTTCAATCTCttttt < 2:250798/251‑1 (MQ=255) gTTAGGGTGAGGCTTTCCAGGACAGAAGGTTTTTCGCTCTTTATGGTGCGGGCATGGTGCCAACGGGGGAGAAGTCAATAAGCCGGGAACCACAGTTGCTGGTACAGTTACTCAGAGAAAAAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGCAGGGGGCGGGAGTCGAACAGTAAATA‑GTAGTAAC‑CTTCCTCCAggcgagtataaatcgcttttt > 2:567504/1‑233 (MQ=255) tAGGGGGAGGCTTTCCAGGCCAGCCGGTTTTTCGCTCTTTATGGTGCGGGCATGGTGCCAACGGGGGAGCAGTCCATAAGCCGGGCACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GAAGCAAC‑CTTCCTCCAGGCGGCTTTTCATCTCTTTTTCCt > 2:172292/1‑251 (MQ=255) gTGAGGCTTTCCAGGCCAGCCGGTTTTTCGCTCTTTATGGTGCGGGCATGGTGCCAACGGGGGAGCAGTCCATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCTTTCAATCTCTTTTTCCTCGcc > 2:502805/1‑251 (MQ=255) gCTTTCCAGGCCAGCTGGTTTTTCTCTCTTTATGGTGCGGGCCTGGTGCCAACGGGGGAGCAGTCCATAAGCCGGGAACCACAGTTGCTGGGACTGTTCCTCAGCGAAATAGACCTGATTAGTTGGAGAAATCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCTGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGTGGCTTTCAATCTCTTTTTCCTCGCCCtgtg < 2:144162/251‑1 (MQ=255) tCCAGGCCAGCCGGTTTTTCGCTCTTTATGGTGCGGGCATGGTGCCAACGGGGGAGCAGTCCATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCTTTCAATCTCTTTTTCCTCGCCCTGTGGAcc > 1:518534/1‑251 (MQ=255) tCCAGGCCAGCCGGTTTTTCGCTCTTTATGGTGCGGGCATGGTGCCAACGGGGGAGCAGTCCATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCTTTCAATCTCTTTTTCCTCGCCCTGTGGAcc > 1:237534/1‑251 (MQ=255) tCCAGGCCAGCCGGTTTTTCGCTCTTTATGGTGCGGGCATGGTGCCAACGGGGGAGCAGTCAATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTAAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGCCCCTGACTTACTGATTCGCCCCGCGCTGGGTGCGGCTGTCGAACAGTAAATA‑GCAG‑AACACTGCCTCCAGGCGGCTTTCAATCTCTTTTTCCTCGCCCTGAGGaac > 2:288699/1‑249 (MQ=255) cAGCCGGTTTTTCGCTCTTTATGGTGCGGGCATGGTGCCAACGGGGGAGCAGTCCATAAGCCGGGAACCACCGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGCTTAGTTGGAGAAAGCACC‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGAGGCTTTCAATCTCTTTTTCCTCGCCCGTTGGACCTTTTAGc > 2:249863/1‑251 (MQ=255) cGGTTTTTCGCTCTTTATGGTGCGGGCATGGTGCCAACGGGGGGGCAGTCCATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTCCCCAGTCCCTGACTTACTGCTTCGCCCCGCGCTGGATGCGGCTGTCGCACAGTAAATC‑GTAGCCAC‑CTTCCTCCAGGCGGCCTTAAATCCCTTTTTCCTCACCCTTTGGACCTTTTAGcttc > 2:526184/1‑247 (MQ=255) gTTTTTCGCTCTTTATGGTGCGGGCATGGTGCCAACGGGGGAGCAGTCCATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCTTTCAATCTCTTTTTCCTCGCCCTGTGGACCTTTTAGCATCAGc > 1:321190/1‑251 (MQ=255) tctTTATGGTGCGGTCATGGTGCCAACGGGGGAGCAGTCCATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGCTTAGTTGGAGAAAGCACA‑TAGCTTGCCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑ATTCCTCCAGGCGGCTTTCAATCCCTTTTTCCTCGCCCTGTGGACCTTTTAGCATCACCCCTCAggct > 2:168210/1‑251 (MQ=255) ttATGGTGCGGGCATGGTGCCAACGGGGGAGCAGTCCATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCTTTCAATCTCTTTTTCCTCGCCCTGTGGACCTTTTAGCATCAGCCCTCCggctg < 1:482598/249‑1 (MQ=255) aTGGTGCTGGGATGGTGCCAAGTGGAGAGCAGTCCATCAGCCGTGAACCCCAGCGGCTTGTACTGTTCCTCAGCGAAATAGACCATATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTTCGGCTGTCGAACAGTAAATT‑GTAGCAAC‑CTTCCTCCAGGCTGCTTTCAATCTCTTTTTCCTCGCCCTTTGGACCTTTTAGCATCAGCCCTCCtgctggct < 2:45923/250‑1 (MQ=255) ggCGGGCATGGTGCCAACGGGGGAGCAGTCCATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCTTTCAATCTCTTTTTCCTCGCCCTGTGGACCTTTTAGCATCAGCCCTCCGGCTGGCtcgtcg < 1:336701/250‑1 (MQ=255) gggCATGGTGCCAACGGGGGAGCAGTCCATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCTTTCAATCTCTTTTTCCTCGCCCTGTGGACCTTTTAGCATCAGCCCTCCGGCTGGCTCGTCGGc > 1:356505/1‑250 (MQ=255) ggTGCCAACGGGGGAGCAGTCCATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCTTTCAATCGCTTTTTCCTCGCCCTGTGGACCTTTTAGCATCAGCCCTCCGGCTGGCTCGTCGGCAATTTcc < 1:79750/251‑1 (MQ=255) gTGCCAACGGGGGAGCAGTCCATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCTTTCAATCTCTTTTTCCTCGCCCTGTGGACCTTTTAGCATCAGCCCTCCGGCTGGCTCGTCGGCAATTTCCg < 1:93053/251‑1 (MQ=255) cAACGGGGGAGCAGTCCATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCTTTCAATCTCTTTTTCCTCGCCCTGTGGACCTTTTAGCATCAGCCCTCCGGCTGGCTCGTCGGCAATTTCCGGCAg < 1:487404/251‑1 (MQ=255) acgtgggcgccatCCATATGCCTGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGCAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCTTTCAATCTCTGTTTCCTCGCCCTGTGGACCTTTTAGCATCAGCCCTCCGGCTGGCTCGTCGGCAATTTCCGGCAGaa < 2:427644/239‑1 (MQ=255) gggggAGCAGTCCATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCTTTCAATCTCTTTTTCCTCGCCCTGTGGACCTTTTAGCATCAGCCCTCCGGCTGGCTCGTCGGCAATTTCCGGCAGAAcc < 1:534893/251‑1 (MQ=255) gggggAGCAGTCCATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCTTTCAATCTCTTTTTCCTCGCCCTGTGGACCTTTTAGCATCAGCCCTCCGGCGGGCTCGTCGGCAATTTCCGGCAGAAcc < 1:213610/251‑1 (MQ=255) ggggAGCAGTCCATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCTTTCAATCTCTTTTTCCTCGCCCTGTGGACCTTTTAGCATCAGCCCTCCGGCTGGCTCGTCGGCAATTTCCGGCAGAAccc < 1:210648/251‑1 (MQ=255) gccATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTACCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCTTTCAATCTCTTTTTCCTCGCCCTGTGGACCTTTTAGCATCAGCCCTCCGGCTGGCTCGTCGGCAATTTCCGGCAGAACCCAGACGTTaa < 1:189115/250‑1 (MQ=255) cATAAGCCGGGAACCACAGTTGCTGGTACGGTTCCTCAGCGAAATAGACCAGTTTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCTTTCAATCTCTTTTTCCTCGCCCTGTGGACCTTTTAGCATCAGCCCTCCGGCTGGCTCGTCGGCAATTTCCGGCAGAACCCAGACGTTAACt < 1:334715/251‑1 (MQ=255) gCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCTTTCAATCTCTTTTTCCTCGCCCTGTGGACCTTTTAGCATCAGCCCTCCGGCTGGCTCGTCGGCAATTTCCGGCAGAACCCAGACGTTAACTtagtc < 1:502805/251‑1 (MQ=255) ccGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCTTTCAATCTCTTTTTCCTCGCCCTGTGGACCTTTTAGCATCAGCCCTCCGGCTGGCTCGTCGGCAATTTCCGGCAGAACCCAGACGTTAACTtcgtcg > 1:517109/1‑251 (MQ=255) ccGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCTTTCAATCTCTTTTTCCTCGCCCTGTGGACCTTTTAGCATCAGCCCTCCGGCTGGCTCGTCGGCAATTTCCGGCAGAACCCAGACGTTAACTtcgtcg < 2:29295/251‑1 (MQ=255) ggAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCTTTCAATCTCTTTTTCCTCGCCCTGTGGACCTTTTAGCATCAGCCCTCCGGCTGGCTCGTCGGCAATTTCCGGCAGAACCCAGACGTTAACTTCGTCGAtt > 1:151839/1‑251 (MQ=255) gTTGCTTGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCTTTCAATCTCTTGTTCCTCGCCCTGTGGACCTTTTAGCATCAGCCCTCCGGCTGGCTCGTCGGCAATTGCCGGCAGAACCCAGACGTTAACTGCGTCGATTAATTCCCgg < 2:541237/251‑1 (MQ=255) gCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCTTTCAATCTCTTTTTCCTCGCCCTGTGGACCTTTTAGCATCAGCCCTCCGGCTGGCTCGTCGGCAATTTCCGGCAGAACCCAGACGTTAACTTCGTCGATTAATGCCCGGTaa < 1:16289/251‑1 (MQ=255) tagaacggtgccTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCACCGCGATGGATGCGGCGGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCATTCAATCTATTTTTCCTCGCCCTGTGGCCATTTTAGCATCAGCCCTCCGTCTGGCTCGTCGGCAATTTCCAGCAGAACCCAGACCTTAACTTAGTCGATTATTGCACGGTAAcc > 2:233903/11‑251 (MQ=255) ggTACTGTTCCTCAGCGCAATAGACCAGATTAGTTGGAGAAAGCCCA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCTTTCAATCTCTTTTTCCTCGCCCGGTGGACCTTTTAGCATCAGCCCTCCGGCTGGCTCGTCGGCAATTTCCGGCAGAACCCAGACGTTAACTACGTCGATTAATGCCCGGTAAcc < 2:372137/250‑1 (MQ=255) tCCTCAGCGAAATAGACCAGATGAGTTGGAGAAAGCACA‑TAGCTTACCCAGGCCCTGACTTACGGATTCGCCACTCGATGGGTGCGGCTGTCGAACAGGAAATA‑GTAGCATC‑CTTCCTCCAGGCGGCTTTCAATCTCTTTTTCCGCGCCCTGTGGACCTTGTAGCATCAGCCCTCCGGCTGGCTCGTCGGCAATAGCCGGCAGAACCCAGACGTTAACGTCGTCGATTAATGCCCGGTAACCGAAGAAGt < 2:524142/250‑1 (MQ=255) tCAGCGAACTAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCTTTCAATCTCTTTTTCCTCGCCCTGTGGCCCTTTTAGCATCAGCCCTCCGGCTGGCTCGTCGGCACTTTCCGGCAGAACCCAGACGTTTACTTCCTCGATTTATGCCCGGTAACCGCAGAAGTcctc > 2:490406/1‑248 (MQ=255) caccGAAATAGACCAAAGTAGTTGGAGAAAGCACAGTA‑CTTACCCAGTCCCTGACTTACTGATTCTCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAT‑CTTCCTCCAGGCGGCTTTCAATCTCTTGTTCCGCGCCCTGTGGACCTTTTAGCATCAGCCCTCCGGCTGTCTCGTCGGCAATTTCCGGAAGAACCCAGCCGTTAACTTCGGCGATTAATGCCCGGTAACCGAAGAAGTCaa < 2:66944/246‑2 (MQ=255) aTAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCTTTCAATCTCTTTTTCCTCGCCCTGTGGCCCTTTTAGCATCAGCCCTCCGGCTGGCTCGTCGGCAATTTCCGGCAGAACCCAGACGTTAACTTCGTCGATTCATGCCCGGTAACCGAAGAAGTCATCgcattcct > 2:265946/1‑244 (MQ=255) aGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCTTTCAATCGCTTTTTCCTCGCCCTGTGGACCTTTTAGCATCAGCCCTCCGGCTGGCTCGTCGGCAATTTCCGGCAGAACCCAGACGTTAACTTCGTCGATTAATGCCCGGTAACCGAAGAAGTCATCGAATGCCTg < 2:67678/250‑1 (MQ=255) gACCAGATTAGTTGGCGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGGACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCTTTCAATCTCTTTTTCCTCGCCCTGTGGACCTTTTAGCATCAGCCCTCCGGCTGGCTCGTCGGCAATTTCCGGCAGAACCCAGAAGTTAACTTCGTCGATTAATGCCCGGTACACGAAACAGTCATCGAATGCCtaa > 2:72441/1‑248 (MQ=255) ccAGAGTAGTGGGAGGAAGTACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGTCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCTTTCAATCGCTTGTTCCTCGCCCTGTGGGCCGTTTAGCACCAGCCCTCCGGCTGGCTCGTCGGCAATTTCCGGCAGAATCCAGACGTTAACAGCGTCGATGAATGCCCGGTAATCGAAGAAGTCATCGAATGCCTGAAtt < 2:494614/251‑1 (MQ=255) aaGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAAAAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCCTTCAATCTCTTTTTCCTCGCCCTGTGGACCTTTTAGCATCAGCCCTCCGGCTGGCTCGTCGGCAATTTCCGGCAGAACCCAGACGTTAACTTCGTCGACTAATGCCCGGAAACCGGAGAAGTCATCGAATGCCTGAATTTTTAGTTGATTGGTGc > 2:422209/1‑251 (MQ=255) aGCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCTTTCAATCTCTTTTTCCTCGCCCTGTGGACCTTTTAGCATCAGCCCTCCGGCTGGCTCGTCGGCAATTTCCGGCAGAACCCAGACGTTAACTTCGTCGATTAATGCCCGGTAACCGAAGAAGTCATCGAATGCCTGAATTTTCAGTTGATTGGTGCt > 1:279919/1‑251 (MQ=255) gCACA‑TAGCTTACCCAGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCTTTCAATCTCTTTTTCCTCGCCCTGTGGACCTTTTAGCATCAGCCCTCCGGCTGGCTCGTCGGCAATTTCCGGCAGAACCCAGACGTTAACTTCGTCGATTAATGCCCGGTAACCGAAGAAGTCATCGAATGCCTGAATTTTCAGTTGATTGGTGCTg < 1:191954/251‑1 (MQ=255) ccatgcccTGACTGTCTGATTCTCCCCGCGACGGGTGCGGCTGTCGATCCGTAAATAAGT‑GAAAC‑CTCCCTCCAGCCGGCTTGCAATCTCTTGTTCCTCGCCCGGTGGCCCCTTTAGCATCAGCCCCCCGGCTGGCTAGTCGGCAATTTCCGGCAGTACCCAGACGTTAACTTCTGCTATTAATGCCTGGTAACCGTAGAAGTCATCGAATGCCTGAATTTTCAGTTGATGGGTTCTGTTGCGTATCatcg < 2:181451/246‑4 (MQ=255) aGTCCCTGACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCTTTCAATCTCTTTTTCCTCGCCCTGTGGACCTTTTAGCATCAGCCCTCCGGCTGGCTCGTCGGCAATTTCCGGCAGAACCCAGACGTTAACTTCGTCGATTAATGCCCGGTAACCGAAGAAGTCATCGAATGCCTGAATTTTCAGTTGATTGGTGCTGTTGCGAATCACCGCa < 1:527078/251‑1 (MQ=255) cccTGACTGACTGATTCGCCCCGCGAGGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCTTTCAATCTCTTTTTCCTCGCCCTGTGGACCTTTTAGCAGCAGCCCTCCGGCTGGCTCGTCGGCAATTTCCGGCAGAACCAAGACGTTAACTTCGTCGATTAATGCCCGGTAACCGAAGAAGTCATCGAATGCCTGAATTTTCAGTTGATTGGTGCTGTTGCGAATCACCGCATAc < 2:53906/251‑1 (MQ=255) gACTTACTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCTTTCAATCTCTTTTTCCTCGCCCTGTGGACCTTTTAGCATCAGCCCTCCGGCTGGCTCGTCGGCAATTTCCGGCAGAACCCAGACGTTAACTTCGTCGATTAATGCCCGGTAACCGAAGAAGTCATCGAATGCCTGAATTTTCAGTTGATTGGTGCTGTTGCGAATCACCGCATACgg < 1:114566/249‑1 (MQ=255) | AGCGTGACCTGGTGACTTGCCAGAATCTGCTGCATGATCCCGGCAATCACCCGATGCTCACTGTGATCCTGATAAAAGGTTAGGGTGAGGCTTTCCAGGCCAGCCGGTTTTTCGCTCTTTATGGTGCGGGCATGGTGCCAACGGGGGAGCAGTCCATAAGCCGGGAACCACAGTTGCTGGTACTGTTCCTCAGCGAAATAGACCAGATTAGTTGGAGAAAGCACA‑TAGCTTACCCAGTCCCTGACTTGCTGATTCGCCCCGCGATGGGTGCGGCTGTCGAACAGTAAATA‑GTAGCAAC‑CTTCCTCCAGGCGGCTTTCAATCTCTTTTTCCTCGCCCTGTGGACCTTTTAGCATCAGCCCTCCGGCTGGCTCGTCGGCAATTTCCGGCAGAACCCAGACGTTAACTTCGTCGATTAATGCCCGGTAACCGAAGAAGTCATCGAATGCCTGAATTTTCAGTTGATTGGTGCTGTTGCGAATCACCGCATACGG > NC_000913/76002‑76492 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |