| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,174,883 | C→T | A95T (GCG→ACG) | ycfT ← | inner membrane protein YcfT |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,174,883 | 0 | C | T | 97.0% | 85.1 / NA | 34 | A95T (GCG→ACG) | ycfT | inner membrane protein YcfT |
| Reads supporting (aligned to +/- strand): ref base C (0/1); major base T (12/20); minor base G (0/1); total (12/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.83e-01 | |||||||||||
CAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTG‑CTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGG‑AATCGGCATAAGCG‑GCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCACTTAACGCCAGCCACTGCACCACGCCCCAAAGCGCCAGCACCCAGAAGATGTTCCAGATCCGTTTATCGAGACAATTTCCCCACGGTACGCTGTCGATATAGCGGCGAATCAAATAGCCGGATATAAAGAAAAAAACCGGCATACGAAAGGGGGCAAGGTAAAGATTGAAATAGATCCAGCATTTGCTCAGGACTTCCGATAACGGATGCTGAAAAGTGGTCAGATGCGGATAAAAGGTAATGACCGAGTGATAAATCACCACC > NC_000913/1174652‑1175112 | caaacaaGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTG‑CTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGG‑AATCGGCATAAGCG‑GCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCACTTAACGCCAGCCACTGCACCACGCCCCAAAGCGTCAGCACCCAGAAGATGTTc < 1:143678/251‑1 (MQ=255) aaGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTG‑CTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGG‑AATCGGCATAAGCG‑GCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCCGCCACTGGTTCAGCGCACTTAACGCCCGCCACTGCACCACGCCCCAAAGCGTCAGCACCCAGAAGATGTTcc > 1:5233/1‑247 (MQ=255) aGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATCAACGCATACAGATACCACAAGCTGGTG‑CTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGG‑AATCGGCATAAGCG‑GCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCACTTAACGCCAGCCACTGCACCACGCCCCAAAGCGTCAGCACCCAGAAGATGTTCCAGATc < 1:84687/251‑1 (MQ=255) aGTGGCAGAGCCAGACGGCTAAAAATTTTACAAACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTG‑ATGGCGGTGATCATCCCGGGCAGGAACTCACCGGTGG‑AATCGGCATAAGCG‑GCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCACTTAACGCCAGCCACTGCACCACGCCCCAAAGCGTCAGCACCCAGAAGATGTTCCAGATCCGTTTAt < 2:454386/250‑1 (MQ=255) ggCAGCGCCAGACGGCCAAAAATTTTACATACCACGAAATAGACAAATAACGCATACAGATACCACAAGC‑GGTGGCTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGG‑AATCGGCATAAGCG‑GCAGTGGAGGCATTGCTTAAAGCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCACTTAACGCCAGCCACTGCACCACGCCCCAAAGCGTCAGCTCCCAGAAGATGTTTCAGATCCGTGTATCgag < 2:514316/251‑1 (MQ=255) gCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTG‑CTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGG‑AATCGGCATAAGCG‑GCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCACTTAACGCCAGCCACTGCACCACGCCCCAAAGCGTCAGCACCCAGAAGATGTTCCAGATCCGTTTATCgaga < 2:193810/251‑1 (MQ=255) aGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTG‑CTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGG‑AATCGGCATAAGCG‑GCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCACTTAACGCCAGCCACTGCACCACGCCCCAAAGCGTCAGCACCCAGAAGATGTTCCAGATCCGTTTATCGAGACa < 1:211148/251‑1 (MQ=255) cAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTG‑CTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGG‑AATCGGCATAAGCG‑GCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCACTTAACGCCAGCCACTGCACCACGCCCCAAAGCGTCAGCACCCAGAAGATGTTCCAGAGCCGTTTATCGAGACAATTTc < 2:278430/251‑1 (MQ=255) gtctgtaaaTTATACATACCACAAAATGTACAAATAACTCACACAGATGTCCCAAGC‑GGTGGATGGCGGGGAGCATCCCGTGCAGGAACTCTCCG‑TGGTAATCGGCGTAATCG‑GCATGGGAGGCATTGCTTAAATCGCCCTCAGGTGCCAGCCACTGGTTCAGCGCACTTAACTCCAGCCACGGCGCCCCGCCCCAAATCGTCAGCACCCAGTAGATGTTCCAGAGCCGTATATCGAGACCATTTCCCCAc < 2:176695/245‑1 (MQ=255) gCTAAAAGTTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTG‑CTGGCGGTGATCATCCCGGGCAGGAACTCACCGGTGG‑GATCGGCATAAGCG‑GCATTGGCGGCATTTCTTCAATCGCGCTCAGGTGACAGCCACTGGTTCAGCGCACTTAACGCCAGCCACTGCACCACGCCCCAAAGCGTCAGCACCCAGAAGATGGTCCAGATCAGGTTATCGAGACAATTTCCCCAcc > 1:339546/1‑250 (MQ=255) aTACCACGAAATAGACAATTAACGCATACAGATACCGCAAGCTGGTG‑CTGTCGGTGATCATCCCGTGCAGGAACTCACCGGTGG‑AATCGGCATAAGCG‑GCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCACTTAACGCCAGCCACTGCACCACGCCCCAAAGCGTCAGCACCCAGAAGATGTTCCAGATCCGTTTATCGAGACAATTTCCCCACGGTACGCTGTCGata < 1:380962/251‑1 (MQ=255) aCCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTG‑CTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGG‑AATCGGCATAAGCG‑GCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCACTTAACGCCAGCCACTGCACCACGCCCCAAAGCGTCAGCACCCAGAAGATGTTCCAGATCCGTTTATCGAGACAATTTCCCCACGGTACGCTGTCGAtata < 1:16907/251‑1 (MQ=255) aaaTAGACAATTAACGCATACAGATACCACAAGCTGGTG‑CTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGG‑AATCGGCATAAGCG‑GCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCACTTAACGCCAGCCACTGCACCACGCCCCAAAGCGTCAGCACCCAGAAGATGTTCCAGATCCGTTTATCGAGACAATTTCCCCACGGTACGCTGTCGATATAgcggcg < 1:440480/251‑1 (MQ=255) tAGACAATTAACGCATACAGATACCACAAGCTGGTG‑CTGGCGGTGATCATCCCGTGCAGGAACTCACCGGGGG‑AATCGGCATAAGCG‑GCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCACTTAACGCCAGCCACTGCACCACGCCCCAAAGCGTCAGCACCCAGAAGATGTTCCAGATCCGTTTATCGAGACAATTTCCCCACGGTACGCTGTCGATATAGCGGCGAAt > 1:428447/1‑251 (MQ=255) agacagtaaactcagacaaattccACAAGCTGGGG‑CTTGTGGTGTTCATCCCGTGCAGGACCGCACCGGTGG‑AACCGGCATAAGTG‑GCATTGGAGCCATTTCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCACTTAACGCCAGCCACTGCACCACGCCCCAAAGCGTCAGCACCCAGAAGATGATCCAGAGCCGTTTATCGAGACAATTTCCCCACGGTACGCTGTCGATATAGCGGCGAATc < 2:139876/229‑1 (MQ=255) attaagcaaTACAGATCCCCCTAGCTGGTG‑CTGGCGGTGATCAACCCGTGCAGGAACTCACCGGCGG‑AATAGGCAGAAGCG‑GCACTGGAGGCATTGCTTAAATCGCGCGCAGTTGCCAGCCACTGGTTCAGCGCACTTAACGCCAGCCACTTCACCACGCCCCAAAGCGTCAGCACCCAGAAGATGTTCCAGAACCGTTTATCGAGACAATTTCCCCACGGTACGCTGTCGATATAGCGGCGAAGCAAATa < 2:243573/243‑1 (MQ=255) ggTG‑CTGGCGGGGATCATCCCGTGCCGGAACTCACCGGTGG‑AATCGGCATAAGCG‑GCATTGGAGGCAATGCTTAAATCGCGCTCAGGGGCCAGCCACTGGTTCAGCGCACTTAACGCCAGCCACTGCACCACGCCCCAAAGCGTCAGCACCCAGAAGATGTTCCCGATCCGTTTATCTAGACAATTTCCCCACGGTACGCTGTCGATTTAACGGCGAATCAAAAAGCCCGATATAAAGAAAAAAAcagacc > 2:132900/1‑246 (MQ=255) gggCGGTGATCATCCCGTGCAGGAACTCACCGGTGG‑AATCGGCATAAGCG‑GCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCACTTAACGCCAGCCACTGCACCACGCCCCAAAGCGTCAGCACCCAGAAGATGTTCCAGATCCGTTTATCGAGACAATTTCCCCACGGTACGCTGTCGATATAGCGGCGA‑TCAAATAGCCGGATATAAAGAAAAAAACCGGCATACGaa < 1:481600/250‑1 (MQ=255) gTGATCATCCCGTGCAGGAACTCACCGGTGG‑AATCGGCATAAGCG‑GCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCACTTAACGCCAGCCACTGCACCACGCCCCAACGCGTCAGCACCCAGAAGATGTTCCAGATCCGTTTATCGAGACAATTTCCCCACGGTACGCTGTCGATATAGCGGCGAATCAAATAGCCGGATATAAAGAAAAAAACCGGCATACGAAAggg > 2:242522/1‑251 (MQ=255) gCAGGAACTCACCGGTGG‑AATCGGCATAAGCG‑GCATTGGAGGCATTGCTTAAATCGAGCTCAGGTGCCAGCCACTGGTTCAGCGCACTTAACGCCAGACACTGCACCACGCCCCAAAGCGTCAGCACCCAGAAGATGTTCCAGATCCGTTTATCGAGACAATTTCCCCACGGTACGCTGTCGATATAGCGGCGAATCAAATAGCCGGATATAAAGAAAAAAACCGGCATACGAAAGGGGGCAAGGTaa > 1:383647/1‑248 (MQ=255) ggaactagctgtggg‑AACCGGCATAAGTG‑GCATGGGAGGCATTGCTTAAATCGCGCTCATGTGCCAGCCACTGTTTCATCGCACTGAACGCCAGCCACTGCACCACGCCCCAAAGCGCCAGCACCCAGAAGATGTTCCAGATCCGTTTATCGAGACAATTTCCCCACGGTACGCTGTCGATATAGCGGCGAATCAAATAGCCGGATATAAAGAAAAAAACCGGCATACGATAGGGGGCAGGGTAAAGATTg < 2:334981/238‑1 (MQ=255) ccACCGTTGG‑AATCGTCATACGCGTGC‑TTGGAGGCAGTCCTTAACTCGCGCTCAGGTTCCTGCCACTGGTTCTGTGCCCTTAACTCCAGCCCCTGCTCCCCGCCCCCATGCGTCAGCACCCAGAAGAGTTTCCCGATCCGTTTATCGAGGCAATTTCCCCACGGTACGCTGTCGATATAGCGTCGAATCAAATAGCCGGATATAAACAAAAAAACCGGCATTCGAATGGGGGCAAGGTAAAGATTGAAATa < 2:202237/250‑1 (MQ=255) gg‑AATCGGCATAAGCG‑GCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCACTTAACGCCAGCCACTGCACCACGCCCCAAAGCGTCAGCACCCAGAAGATGTTCCAGATCCGTTTATCGAGACAATTTCCCCACGGTACGCTGTCGATATAGCGGCGAATCAAATAg > 1:486569/1‑187 (MQ=255) ggCATAAGCG‑GCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCACTTAACGCCAGCCACTGCACCACGCCCCAAAGCGTCAGCACCCAGAAGATGTTCCAGATCCGTTTATCGAGACAATTTCCCCACGGTACGCTGTCGATATAGCGGCGAATCAAATAGCCGGATATAAAGAAAAAAACCGGCATACGAAAGGGGGCAAGGTAAAGATTGACATAGATCCAGCATTTGc > 1:406628/1‑251 (MQ=255) caataagttgCATTGGAGGCACTGCGTAAATGGCGCCCGGTTGCCAGCCGCTGGTTCAGCGCACTTAACGCCAGCCACTGCACCACGCCCCAAAGCGTCAGCACCCAGAAGATGTTCCAGAGCCGGTTATCGAGACAATTGCCCCACGGTACGCTGTCGATATAGCGGCGAATCAAATAGCCGGATATAAAGAAAAAAACCGGCATACGAAAGGGGTCAAGGTAAAGATTGAAATAGATCCAGCATTTgaa < 2:133784/242‑3 (MQ=255) gCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCACTTAACGCCAGCCACTGCACCACGCCCCAACGCGTCAGCACCCAGAAGATGTTCCAGATCCGTTTATCGAGACAATTTCCCCACGGTACGCTGTCGATCTAGCGGCGAATCAAATAGCCGGATATAAAGAAAAAAACCGGCATACGAAAGGGGGCAAGGTAAAGATTGAAATAGATCCAGCATTTGCTCAGGACTTc > 1:125200/1‑251 (MQ=255) cATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCACTTAACGCCAGCCACTGCACCACGCCCCAAAGCGTCAGCACCCAGAAGATGTTCCAGATCCGTTTATCGAGACAATTTCCCCACGGTACGCTGTCGATATAGCGGCGAATCAAATAGCCGGATATAAAGAAAAAAACCGGCATACGAAAGGGGGCAAGGTAAAGATTGAAATAGATCCAGCATTTGCTCAGGACTTcc < 2:428447/251‑1 (MQ=255) ggggctatttctaaaaTCGCACTCTGGTTCCAGCCACTGGTTCACCTCACTTCACGCCAGCTACTGCACCCCGTCCCAAATCGTCAGCACCCAGAAGATTTTCTAGATCCGTTTATCGAGACAATTTCCCCACGTGACGCGGTCGATATAGCGGCGAATCAAATAGCCGGATATAAAGAAAAAAACCGGCATACGAAAGTGGTCAATGTTAAGATTGAAATAGATCCAGCATTTGCTCAGGACTTTCGATa < 2:560322/238‑1 (MQ=255) ttGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCACTTAACGCCAGCCACTGCACCACGCCCCAAAGCGTCAGCACCCAGAAGATGTTCCAGATCCGTTTATCGAGACAATTTCCCCACGGTACGCTGTCGATATAGCGGCGAATCAAATAGCCGGATATAAAGAAAAAAACCGGCATACGAAAGGGGGCAAGGTAAAGATTGAAATAGATCCAGCATTTGCTCAGGACTTCCGATAACGGATg > 1:284509/1‑251 (MQ=255) ccagccaCTGGTTCAGCGCACTTAACGCCAGCCACTGCACCACGCCCCAAAGCGTCAGCACCCAGAAGATGTTCCAGATCCGTTTATCGAGACAATTTCCCCACGGTACGCTGTCGATATAGCGGCGAATCAAATAGCCGGATATAAAGAAAAAAACCGGCATACGAAAGGGGGCAAGGTAAAGATTGAAATAGATCCAGCATTTGCTCAGGACTTCCGATAGCGGATGCTGAAAAGTGGTCAGATGCGGa < 1:499430/251‑1 (MQ=255) cTGGTTCAGCGCACTTAACGCCAGCCACTGCACCACGCCCCAAAGCGTCAGCACCCAGAAGATGTTCCAGATCCGTTTATCGAGACAATTTCCCCACGGTACGCTGTCGATATAGCGGCGAATCAAATAGCCGGATATAAAAAAAAAAACCGGCATACGAAAGGGGGCAAGGTAAAGATTAAAATAGATCCAGAATTTGCTCAGGACTTCCGATAACGGATGCTGAAAAGGGGCCAGATGCGGGTAAAAgg > 2:116247/1‑251 (MQ=255) aaCGCCAGCCACTGCCCCACGCCCCAAAGCGTCAGCACCCAGAAGATGTTCCAGAGCCGTTTACCGAGACAATTTCGCCACGGTACGCTGTCGATATAGCGGCGAATCAAATAGTCGGATATAAAGAAAAAAACCGGCATTCGAAAGGGGGCAAGGTAAAGATTGAAAGAGATCCAGCATTTGCTCAGGACTACCGATAACGGATGCTGAAAAGTGGTCAGATGCGGATAAAAGGTAAGGTCCGAGTGAt < 2:284509/250‑1 (MQ=255) agcaaCTGCACCACGCCTCAAAGGGGCAGCACCAAGAAGATGTTCCAGATACGGTTATCGAGACAATTTCCCCACGGTACGATGTCGATATAGCGGCGAATCAAATAGCCGGATATAAAGAAAAAAACCGGCATACGAAAGGGGGCAAGGTAAAGATTGAAATAGATCCAGCATTTGCTCATGACGTCCGATAACGGATGCTGAAAAGTGGTCAGATGCGGATAAAAGGTAATGACCGAGTGATAAATcac < 2:125200/247‑1 (MQ=255) tGCACCACGCCCCAAAGCGTCAGAACCCAGACGATGTTCCAGATCCGTTTATCGAGACAATTTCCCCACGGTACGCTGTCGATATAGCGGCGAATCAAATAGCCGGATATAAAGAAAAAAACCGGCATACGAAAGGGTGCAAGGAAAAGATTGAAATAGATCCAGCATTTGCTCAGAACTTCCGATAACGGATGCTGCAAAGTGGTCAGATGCGGATAAAAGGTAATGACCGAGTGATAAATCaccacc > 1:149986/1‑249 (MQ=255) | CAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTG‑CTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGG‑AATCGGCATAAGCG‑GCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCACTTAACGCCAGCCACTGCACCACGCCCCAAAGCGCCAGCACCCAGAAGATGTTCCAGATCCGTTTATCGAGACAATTTCCCCACGGTACGCTGTCGATATAGCGGCGAATCAAATAGCCGGATATAAAGAAAAAAACCGGCATACGAAAGGGGGCAAGGTAAAGATTGAAATAGATCCAGCATTTGCTCAGGACTTCCGATAACGGATGCTGAAAAGTGGTCAGATGCGGATAAAAGGTAATGACCGAGTGATAAATCACCACC > NC_000913/1174652‑1175112 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |