| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,156,913 | G→A | G46D (GGT→GAT) | ycfH → | putative metal‑dependent hydrolase YcfH |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,156,913 | 0 | G | A | 97.0% | 90.0 / NA | 34 | G46D (GGT→GAT) | ycfH | putative metal‑dependent hydrolase YcfH |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (14/18); minor base C (1/0); total (15/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.55e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.34e-01 | |||||||||||
CAGGCATCAACCGCGAGCTTCTCATCACCGATCTTTTACTGCGTATTGAGCATTACCTGCAACCGGGCGTTGTGCTACCGGTTCCTCATCTTTAAGAGAGACATCATGTTTTTAGTCGACTCACACTGCCATCTCGATGGTCTGGATTATGAATCTTTGCATAAGGACGTGGATGACGTTCTGGCGAAAGCCGCCGCACGCGATGTGAAATTTTGTCTGGCAGTCGCCACAACATTACCGGGTTATTTACATATGCGGGATCTGGTAGGCGAACGTGACAACGTCGTATTTTCTTGTGGCGTGCATCCACTCAACCAGAATGATCCCTACGATGTAGAAGATTTACGCCGTCTGGCGGCAGAAGAGGGTGTTGTAGCGCTGGGTGAAACCGGGCTGGATTATTATTACACGCCGGAAACTAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACA > NC_000913/1156672‑1157149 | cAGGTATCAACCGCGCGCTTCTCATCACCGATCTTTTACTGCGTATTGAGCATTACCTGCAACCGGTCGTTGTGCTACCGGTGCCTCATCTTTAAGAGAGTCATCAGGTTTTTAGTCGACTCACACTGCCATCTCGATGGTCTGGATTATGAATCTTTGCATAAGGACGTGGATGACGTTCTGGCGAAAGCCGCCGCACGCGATTTGAAATTTTGTCTGGCAGTCGCCACAACATTACCGGATTATTTACa < 2:86373/251‑1 (MQ=255)cAGGCATCAACCGCGAGCTTCTCATCACCGATCTTTTACTGCGTATTGAGCATTACCTGCAACCGGGCGTTGTGCTACCGGTTCCTCATCTTTAAGAGAGACATCATGTTTTTATTCGACTCACACTGCCATCTCGATGGTCTGGATTATGAATCTTTGCATACGGACGTGGATGACGTTCTGGCGATAGCCGCCTCACGCGATGTGAAATTTTGTCTGGCTGTCGCCACAACATTCACGGATTATTTAc > 2:434991/1‑250 (MQ=255) acccGCGGGCTTCTCATCACCGATCTTTTACTGCGTATTGAGCATTACCTGCAACCGGGCGTTGTGCTACCGGTTCCTCATCTTTAAGAGAGACATCATGTTTTTAGTCGACTCACACTGCCATCTCGATGGTCTGGATTATGAATCTTTGCATAAGGACGTGGATGACGTTCTGGCGAAAGCCGCCGCACGCGATGTGAAATTTTGTCTGGCAGTCGCCACAACATTACCGGATTATTTACATATGCggg < 2:52368/249‑1 (MQ=255) aGCTTCTCATCACCGATCTTTTACTGCGTATTGAGCATTACCTGCAACCGGGCGTTGTGCTACCGGTTCCTCATCTTTAAGAGAGACATCATGTTTTTAGTCGACTCACACTGCCATCTCGATGGTCTGGATTATGAATCTTTGCATAAGGACGTGGATGACGTTCTGGCGAAAGCCGCCGCACGCGATGTGAAATTTTGTCTGGCAGTCGCCACAACATTACCGGATTATTTACATATGCGGGATCTGGt < 1:89604/251‑1 (MQ=255) aCCGATCTTTTACTGCGTATTGAGCATTACCTGAAACCGTGCGTTGTGCTACCGGTTCCTCATCTTTAAGAGAGACATCATGTTTTTAGTCGACTAACACTGCCATCTCGATGGTCTAGATTATGAATCTTTGCATAAGGACGTGGTTGACGTTCTGGCGCCAGCCGCCGCAAGCGATGTGAAAATTTGTCTGGCAGTAGCCACACCATTACCGGATTATTTACATATTCGGGATCTGGTAGGCGaatt > 2:516555/1‑247 (MQ=255) tttACTGCGTATTGAGCATTACCTGCAACCGGGCGTTGTGCTACCGGTTCCTCATCTTTAAGAGAGACATCATGTTTTTAGTCGACTCACACTGCCATCTCGATGGTCTGGATTATGAATCTTTGCATAAGGACGTGGATGACGTTCTGGCGAAAGCCGCCGCACGCGATGTGAAATTTTGTCTGGCAGTCGCCACAACATTACCGGATTATTTACATATGCGGGATCTGGTAGGCGAACGTGACa < 1:176041/246‑1 (MQ=255) tACTGAGTATTGAGCATTACCTGCAACCGGGCGTTGTGCTACCGGTTCCTCATCTTTAAGAGAGACATCATGTTTTTAGTCGACTCACACTGCCATCTCGATGGTCTGGATTATGAATCTTTGCATAAGGACGTGTATGACGTTCTGGCGAAAGCCGCCGCACGCGATGTGAAATTTTGTCTGGCAGTCGCCACAACATTACCGGATTATTTACATATGCGGGATCTGGTAGGCGAACGTGACACcgtcgt > 2:392766/1‑251 (MQ=255) gCGTATTGAGCATTACCTGCAACCGGGCGTTGTGCTACCGGTTCCTCATCTTTAAGAGAGAAATCATGTTTTTAGTCGACTCACACTGCCATCTCGATGGTCTGGATTATGAATCTTTGCATAAGGACGTGGATGACGTTCTGGCGAAAGCCGCCGCACGCGATGTGAAATTTTGTCTGGCAGTCGCCACAACATTACCGGATTATTTACATATGCGGGATCTGGTAGGCGAACGTGACAACGTCGTAt < 1:309141/249‑1 (MQ=255) tACCTGCAACCGGGCGTTGTGCTACCGGTTCCTCATCTTTAAGAGGGACATCATGTTTTTAGTCGTCTCACTCTGCCATCTCGATGGTCTGGATTATGAATCTTTGCATAAGGACGTGGATGACGTTCTGGCGAAAGCCGCCGCACGCGATGTGAAATTTTGTCTGGCAGTCGCCACAACATTACCGGATTATTTACATATGCGGTATCTGGTAGGCGAACGTGACAACGTCGTATTTTCTTGTGGCGTg < 1:90320/250‑1 (MQ=255) cagggCGTTGTGCTACCGGTTTCTCATCTTTAAGAGCGAAATCATGTTTTTAGTCGACTCACACTGCCAACTCACTGGTCTGGATTATGAATCTATGCATAAGGACATGGATGACGTTCTGTCGAACGCCGACGCACGAGTTGTGACATTTTGTCTGGCAGTCGCCAAAACATTACCGGATTATTTAAATATGCGGGATCTGGTGGGAGAACGTGCAAAAGTCGACTTTTCTTATGGCATGCactcactc > 2:416117/3‑243 (MQ=255) aCCGGTTCCTCATCTTTAAGGGAGAAATCTTGTTTTGAGTCGACTCCTACTGCCATCTCGATGGTCTGGAGTATGAATCTTTGCATAAGGACGTGGATGACGTTCTGGCGAAAGCCGCCGCACGCGATGTGAAATTTTGTCTGGCAGTCGCCACAACATTACCGGATTATTTTCATATGCGGGATCTGGTAGGCGAACGTGACAACGCCGTATTTTCTTGTGGCGTGCATCCACTCAACCAGAATGATcc < 2:64371/250‑1 (MQ=255) tttAAGAGAGACATCATGTTTTTAGTCGACTCACACTGCCATCTCGATGGTCTGGATTATGAATCTTTGCATAAGGACGTGGATGACGTTCTGGCGAAAGCCGCCGCACGCGATGTGAAATTTTGTCTGGCAGTCGCCACAACATTACCGGATTATTTACATATGCGGGATCTGGTAGGCGAACGTGACAACGTCGTATTTTCTTGTGGCGTGCATCCACTCAACCAGAATGATCCCTACGATGTaga > 1:512699/1‑248 (MQ=255) tAAGAGAGACATCATGTTTTTAGTCGACTCACACTGCCATCTCGATGGTCTGGATTATGAATCTTTGCATAAGGACGTGGATGACGTTCTGGCGAAAGCCGCCGCACGCGATGTGAAATTTTGTCTGGCAGTCGCCACAACATTACCGGATTATTTACATATGCGGGATCTGGTAGGCGAACGTGACAACGTCGTATTTTCTTGTGGCGTGCATCCACTCAACCAGAATGATCCCTACGATGTAGAAGAtt > 1:226097/1‑251 (MQ=255) aaGAGAGACATCATGTTTTTAGTCGACTCACACTGCCATCTCGATGGTCTGGATTATGAATCTTTGCATAAGGACGTGGATGACGTTCTGGCGAAAGCCGCCGCACGCGATGTGAAATTTTGTCTGGCAGTCGCCACAACATTACCGGATTATTTACATATGCGGGATCTGGTAGGCGAACGTGACAACGTCGTATTTTCTTGTGGCGTGCATCCACTCAACCAGAATGATCCCTCCGATGTAGAAGAttt < 1:95979/251‑1 (MQ=255) agagggACATCATGTTTTTAGGCGACTCACACTGCCATCTCGATGGTCTGGATTATGAATCTTTGCATAAGGACGTTGATGACGTTCTGGCGAAAGCCGCCGCACGCGATGTGAAATTTTGGCTGGCATTCGCCACAACATTACCGGATTATTTACATATGCGGGATCTGGTAGGCGAACGTGACAACGTCGTATTTTCTTGTGGCGTGCATCCACTCAACCAGAATGATCCCTACGATTTAGAAGATTTa < 2:537546/251‑1 (MQ=255) gagagaCATCATGTTTTTAGTCGACTCACACTGCCATCTCGATGGTCTGGATTATGAATCTTTGCATAAGGACGTGGATGACGTTCTGGCGAAAGCCGCCGCACGCGATGTGAAATTTTGTCTGGCAGTCGCCACAACATTACCGGATTATTTACATATGCGGGATCTGGTAGGCGAACGTGACAACGTCGTATTTTCTTGTGGCGTGCATCCACTCAACCAGAATGATCCCTACGATGTAGAAGATTTAc < 1:194896/251‑1 (MQ=255) agaCATCATGTTTTTAGTCGACTCACACTGCCATCTCGATGGTCTGGATTATGAATCTTTGCATAAGGACGTGGATGACGTTCTGGCGAAAGCCGCCGCACGCGATGTGAAATTTTGTCTGGCAGTCGCCACAACATTACCGGATTATTTACATATGCGGGATCTGGTAGGCGAACGTGACAACGTCGTATTTTCTTGTGGCGTGCATCCACTCAACCAGAATGATCCCTTCGATGGAGAAGATTTACGcc > 1:82412/1‑251 (MQ=255) gACTCACACTGCCATCTCGATGGTCTGGATTATGAATCTTTGCATAAGGACGTGGATGACGTTCTGGCGAAAGCCGCCGCACGCGATGTGAAATTTTGTCTGGCAGTCGCCACAACATTACCGGATTATTTACATATGCGGGATCTGGTa > 1:572001/1‑150 (MQ=255) cTCACACTGCCATCTCGATGGTCTGGATTATGAATCTTTGCATAAGGACGTGGATGACGTTCTGGCGAAAGCCGCCGCACGCGATGTGAAATTTTGTCTGGCAGTCGCCACAACATTACCGGATTATTTACATATGCGGGATCTGGTAGGCGAACGTGACAACGTCGTATTTTCTTGTGGCGTGCATCCACTCAACCAGAATGATCCCTACGATGTAGAAGATTTACGCCGTCTGGCGGCAGAAGAggggg > 1:384307/1‑249 (MQ=255) cacaCTGCCAGCTCTATGGTCTGGATTATGAATCTTTGCATAAGGACGTGGATGACGTTCTGGCGAAAGCCGCCGCACGCGATGTGAAATTTTGTCTGGCAGTCGCCACAACATTACCGGATTATTTACATATGCGGGATCTGGTAGGCGAACGTGACAACGTCGTATTTTCTTGTGGCGTGCATCCACTCAACCAGAATGATCCCTACGATGTAGAAGATTTACGCCGTCTGGCGGCAGAAGAGGgtg < 2:1782/249‑1 (MQ=255) acacGGCCATCTGGATGGTCTTGATTATGAATCTTTGCATAAGGACGTGGATGACGTTCTGGCGAAAGCCGCCGCACGCGATGTGAAATTTTGTCTGGCAGTCGCCACAACATTACCGGATTATTTACATATGCGGGATCTGGTAGGCGAACGTGACAACGTCGTATTTTCGTGTGGCGTGCATCCACTCAACCAGAATGATCCCTACGATGTAGAAGATTTACGCCGTCTGGCGGCAGAAGAGGGtgttg < 2:301696/251‑1 (MQ=255) ttGCATAAGGACGTGGATGACGTTCTGGCGAAAGCCGCCGCACGCGATGTGAAATTTTGTCTGGCAGTCGCCACAACATTACCGGATTATTTACATATGCGGGATCTGGTAGGCGAACGTGACAACGTCGTATTTTCTTGTGGCGTGCATCCACTCAACCAGAATGATCCCTACGATGTAGAAGATTTACGCCGTCTGGCGGCAGAAGAGGGTGTTGTAGCGCTGGGTGAAACCGGGCTGGattattat < 1:476768/249‑1 (MQ=255) tGGATGACGTTCTGGCGAAAGCCGCCGCACGCGATGTGAAATTTTGTCTGGCAGTCGCCACAACATTACCGGATTATTTACATATGCGGGATCTGGTAGGCGAACGTGACAACGTCGTATTTTCTTGTGGCGTGCATCCACTCAACCAGAATGATCCCTACGCTGGAGAAGATTTACGCCGTCTGGCGGCAGAAGTGGGTGTTGTAGCGCTGGGTGAAACCGGGCTGGATTATTTTTTCCCGCCGGAAACt > 2:477306/1‑251 (MQ=255) gaggACGTTCTGGCGAAAGACGCCGTACTCGATTTGAATGTTTGTCTTGCAGTCGTCACAACATTTCCGGATTATTTACATATGCGGGATCTGGGAGGCGAACGGGACAACGTCGTATTTGCTTGTGGCGGTCATCCACGCAACCAGAATGAGCCCTACGATGTAGATGATTTACGCCGTCTGGCGGCAGAAGAGGGTGTTGTAGCGCTGGGTGAAACCGGGCTGGATTATTATTCCACTCCGGAACCTaa < 2:508824/248‑1 (MQ=255) gccgccGCACGCGATGTGAAATTTTGTCTGGCAGTCGCCACAACATTACCGGATTATTTACATATGCGGGATCTGGTAGGCGAACGTGACAACGTCGTATTTTCTTGTGGCGTGCATCCACTCAACCAGAATGATCCCTACGATGTAGAAGATTTACGCCGTCTGGCGGCAGCAGAGGGGGTTGTAGCGCTGGGGGAAACCGGGCTGGATTATTATTACACGCCGGAAACTAACATACGTCAGCAagaggc > 2:188518/1‑249 (MQ=255) cgccgcACGCGATGTGAAATTTTGTCTGGCAGTCGCCACAACATTACCGGATTATTTACATATGCGGGATCTGGTAGGCGAACGTGACAACGTCGTATTTTCTTGTGGCGTGCATCCACTCAACCAGAATGATCCCTACGATGTAGAAGATTTACGCCGTCTGGCGGCAGAAGAGGGTGTTGTAGCGCTGGGTGAAACCGGGCTGGATTATTATTACACGCCGGAAACTAAAGTACGTCAGCAAGAGTCCt < 1:270073/251‑1 (MQ=255) gccgcACGCGATGTGAAATTTTGTCTGGCAGTCGCCACAACATTACCGGATTATTTACATATGCGGGATCTGGTAGGCGAACGTGACAACGTCGTATTTTCTTGTGGCGTGCATCCACTCAACCAGAATGATCCCTACGATGTAGAAGATTTACGCCGTCTGGCGGCAGAAGGGGGTGTTGTAGCGCTGGGGGAAACCGGGCTGGATTATTATTACACGCCGGAAACTAAAGTACGGCAggaatcgga > 2:369961/1‑240 (MQ=255) gccgcACGCGATGTGAAATTTTGTCTGGCAGTCGCCACAACATTACCGGATTATTTACATATGCGGGATCTGGTAGGCGAACGTGACAACGTCGTATTTTCTTGTGGCGTGCATCCACTCAACCAGAATGATCCCTACGATGTAGAAGATTTACGCCGTCTGGCGGCAGAAGAGGGTGTTGTAGCGCTGGGTGAAACCGGGCTGGATTATTATTACACGCCGGAAACTAAAGTACGTCAg < 1:369961/240‑1 (MQ=255) cACGCGATGTGAAATTTTGTCTGGCAGTCGCCACAACATTACCGGATTATTTACATATGCGGGATCTGGAAGGCGAACGTGACAACGTCGTATTTTCTTGTAGCGTGCTTCCACTCAGCCAGGATGATCCCTACGCTGGATACGATTTACGCCGTCTGGCGGCCGGAGAGGGTGGTGTAGAGCTTGGTGAAACCGGGCTGGAGTTTTAGTACACGACGGAAACTACAGGACGACAACAAGAGTCCTTcatc > 2:132831/1‑251 (MQ=255) gAAATTTTGTCTGGCAGTCGCCACAACATTACCGGCTTATTTACATATGCGGGATCTGGTAGGCGAACGTGACAACGTCGTATTTTCTTGTGGCGTGCATACCCTCAACCAGAATGATCCCTACGCTGTAGAAGATTTTCGCCGTCTGGCGGCAGCAGAGGGTGTTGTAGCGCTGGGTGAAACCGGGCTGGCTTATTATTACACGCCGGAAAATAAAGGTCGTCAGCAAGAATCCTTCATCCATAATATcc > 2:213758/1‑251 (MQ=255) ttGTCGGGTAGTCGCCAAAACATTACCGGTTTATTTACATATGCGGGATCTGGTAGGCGAACGGGAAAACGTCGGAGTTTCTTGTGGCGTGCATCCACTCAACCAGAATGATCCCTACGATGTAGAAGAGTTAAGCCGTCTGGCGGCAGAAGAGGGTGTGGGAGCGCGGGGTGAAACCGGGCTGGATTATTATTACACGCCGGAAACTAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCTAGAtt < 2:479072/250‑1 (MQ=255) aGTCGCCACAACATTACCGGATTATTTACATATGCGGGATCTGGTAGGCGAACGTGACAACGTCGTATTTTCTTGTGGCGTGCCTCCACTCAACCAGAATGATCCCTACGATGTAGAAGGTTTACGCCGt > 2:291875/1‑130 (MQ=255) aGTCGCCACAACATTACCGGATTATTTACATATGCGGGATCTGGTAGGCGAACGTGACAACGTCGTATTTTCTTGTGGCGTGCATCCACTCAACCAGAATGATCCCTACGATGTAGAAGATTTACGCCGt < 1:291875/130‑1 (MQ=255) cacaACATTACCGGATTATTTACATATGCGGGATCTGGTAGGCGAACGTGACAACGTCGTATTTTCTTGTGGCGTGCATCCACTCAACCAGAATGATCCCTACGATGTAGAAGATTTACGCCGTCTGGCGGCAGAAGAGGGTGTTGTAGCGCTGGGTGAAACCGGGCTGGATTATTATTACACGCCGGAAACTAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACa < 1:477306/251‑1 (MQ=255) | CAGGCATCAACCGCGAGCTTCTCATCACCGATCTTTTACTGCGTATTGAGCATTACCTGCAACCGGGCGTTGTGCTACCGGTTCCTCATCTTTAAGAGAGACATCATGTTTTTAGTCGACTCACACTGCCATCTCGATGGTCTGGATTATGAATCTTTGCATAAGGACGTGGATGACGTTCTGGCGAAAGCCGCCGCACGCGATGTGAAATTTTGTCTGGCAGTCGCCACAACATTACCGGGTTATTTACATATGCGGGATCTGGTAGGCGAACGTGACAACGTCGTATTTTCTTGTGGCGTGCATCCACTCAACCAGAATGATCCCTACGATGTAGAAGATTTACGCCGTCTGGCGGCAGAAGAGGGTGTTGTAGCGCTGGGTGAAACCGGGCTGGATTATTATTACACGCCGGAAACTAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACA > NC_000913/1156672‑1157149 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |