| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,529,039 | C→T | G402D (GGT→GAT) | sgcC ← | putative PTS enzyme IIC component SgcC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,529,039 | 0 | C | T | 96.3% | 151.6 / NA | 55 | G402D (GGT→GAT) | sgcC | putative PTS enzyme IIC component SgcC |
| Reads supporting (aligned to +/- strand): ref base C (0/2); new base T (34/18); total (35/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.33e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTGTCGATAACCCAGTTCATCCCCAAC‑TGCGCATCAAAACTCGGGTCGCCGGGCAATGCACGTAGATGGCACATGGCGATGACCGCTTTTTCCGTCCCAATAACCTC‑TTTCAGCCAACTCATTGAAAGTACTCCTTATTCC‑GATAATTCACGTTTACGTAAGAACAGCACGACGCTGGCGACAATACCGACCGCCACGACAACGCCAATAATCCCAAGCGACATCAATTCAGAAATCGACCAACCGAACA‑TATTG‑CCCACGGACAACGCTGAGATTTGCGCACTTTCACCGGCAAAACTGAAACCGCCTTTGAGCGCCATTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATCATCACGATGACCCCGCTTATCAACGTCCTGACCAGGTCTCCGCGGTGGATAACCGTAGCCATACAGATAAAGAACGGTGCTACCGGCAGGTCTGCGAGGGGTAACA‑CTTTGTTGCCC > NC_000913/4528796‑4529281 | ttGTCTATAACCCAGTTCATCCCCAAC‑TGCGCATCAAAACTCGGGTCGCCGGGCAATGCACGTAGATGGCACATGGCGATGACCGCTTTTTCCGTCCCAATAACCTC‑TTTCAGCCAACTCATTGAAAGTACTCCTTATTCC‑GATAATTCACGTTTACGTAAGAACAGCACGACGCTGGCGACAATACCGACCGCCACGACAACGCCAATAATCCCAAGCGACATCAATTCAGAAATCGACCAATCGAACa‑t > 1:198371/1‑251 (MQ=255) ttCATCCCCAAC‑TGCGCATCAAAACTCGGGTCGCCGGGCAATGCACGTAGATGGCACATGGCGATGACCGCTTTTTCCGTCCCAATAACCTC‑TTTCAGCCAACTCATTGAAAGTACTCCTTATTCC‑GATAATTCACGTTTACGTAAGAACAGCACGACGCTGGCGACAATACCGACCGCCACGCCAACGCCAATAATCCCAAGGTACATCAATTCAGAAATCGACCATTCGATCA‑TATTG‑CCCACGGACa > 2:221308/1‑250 (MQ=255) tcaacccAACCTGCGCACCAAAACTCGGGTCGCCGGGCAATGCACGTAGATGGCACATGGCGATGACCGTTTTTTCCGTCCCAATAACCTC‑TTTCAGCCAACTCATTGAAAGTACTCCTTATTCC‑GATAATTCACGTTTACGTAAGAACAGCACGACGCTGGCGACAATACCGACCGCCACGACAACGCCAATAATCCCAAGCGACATCAATTCAGAAATCGACCAATCGAACA‑TATTG‑CCCACGGACaa < 1:291463/246‑1 (MQ=255) gcATCAAAACTCGGGTCGCCGGGCAATGCACGTAGATGGCACATGGCGATGACCGCTTTTTCCGTCCCAATAACCTC‑TTTCAGCCAACTAATTGAAAGCACTCCTTATTCC‑GATAATTCACGTTTACGTAAGAACAGCACGACGCTGGCGACAATACCGACCGACACGACAACGCCAATAATCCCAAGCGACATAAATTCAGAAATCGACCAATCGAACA‑TATTG‑CCCACGGACACCGCTGAGCTTTgcgc > 1:358576/1‑251 (MQ=255) aTCAACACTCGGGTCGCCGGGCAATGCACGTAGATGACACATGGCGATCACCGCTTTTTCCGTCCCAATAACCTC‑TTTCAGCCAACTCATTGAAAGTACTCCTTATTCC‑GATAATTCACGTTAACGTGAGAACAGCACGACGCAGGCGACAATACCGACCGCCACGACAACGCCAAAAATCACAAGAGACATCAATTCAGAAATCGACCAATCGA‑CACTATTG‑CCCACGGACAACGCTTAGAttttggcgc > 2:5567/1‑245 (MQ=255) cAAAACTCGGGTCGCCGGGCAATGCACGTAGATGGCACATTGCGATGACCGCTTTTTCCGTCCCAATAACCTC‑TTTCAGCCAACTCATTGAAAGTACTCCTTATTCC‑GATAATTCACGTTTACGTAAGAACAGCAAGCCGCTGGCGCCAATACCGCCCGCCACGACACCGCCAATAATCCCAAGCGCCATCAATTCAGGAATCTACCAATCGAACA‑TATTG‑CACCCGGCCAACGCTGAGTTGTGCGCACtt > 2:552017/1‑251 (MQ=255) cccGGGCAATGCACGAAGATGGCACATGGCGATGACCGCTTTTCCCGTCCCAATACCCTC‑TTCCAGCCAACCCATGAAAAGTACCCCTTATCCC‑GATAATTCCCTTTAACGAAAGAACAGCACGACGCTGGCGACAATACCGACCGCCACGACAACGCCAATAATCCCAAGCGACATCAATTCAGAAATCGACCAATCGAACA‑TATTG‑CCCACGGACAACGCTGAGATTTGCGCACTTTCACCGGCAAAAc < 1:283376/250‑1 (MQ=255) caaaTGCTCGTATATGGCACAGGGGTAGGACCG‑TTTTTCCCGCCCAAAAACCCCCTTTCAGCCAACACATGGAAATTACTCCTTATTCA‑AATAATTCACGTTTACGTAAGAACAGCACGCCGCTGGCGACAATACCTACCGCCACGACAACGCCAATAATCCCAAGCGACATCAATTCAGAAATCGACCAATCGAACA‑TATTG‑CCCACGGACAACGCTGAGATTTGCGCACTTTCACCGGCAAAACTGaaa < 2:115823/249‑1 (MQ=255) aTGGCACATGGCGATGACCGCTTTTTCCGTCCCAATAACCTC‑TTTCAGCCAACTCATTGAAAGGACTCCTTATTCC‑GTTAATTCACGTTTACGTCAGAACAGCACGACGCTGGCGACAAAAACGACCACCACGACAACGCCAATAAGCCAAAGCGACCTCAATTCAGAACTCGACCAATCGAACA‑TATTG‑CCCCAGGACAACGACGAGATTGGGGCACTTTCACTGACAAAACTGAAACCGCCGTTgga > 2:92906/1‑247 (MQ=255) gACCGCTTTTTCCGTCCCAATAACCTC‑TTTCAGCCAACTCATTGAAAGTACTCCTTATTCC‑GATAATTCACGTTTACGTAAGAACAGCACGACGCTGGCGACAATACCGACCGCCACGACAACGCCAATAATCCCAAGCGACATCAATTCAGAAATCGACCAATCGAACA‑TATTG‑CCCACGGACAACGCTGAGATTTGCGCACTTTCACCGGCAAAACTGAAACCGCCTTTGAGCGCCATTTCAGTGAAGt > 1:248259/1‑251 (MQ=255) tttCCGTCCCAATAACCTC‑TTTCAGCCACCTCATTGAAAGTACTCCTTATTCC‑GATAATTCACGTTTACGTAAGAACAGCACGACGCTGGCGACAATACCGACCGCCACGACAACGCCAATAATCCCAAGCGACATCAATTCAGAAATCGACCAATCGAACA‑TATTG‑CCCACGAACAACGCTGAGATTTGCGCACTTTCACCGGCAAACCTGAAACCGCCTTTGAGCGCCATTTCAGTGAAGTAAGGcgcg > 1:129541/1‑251 (MQ=255) gTCCCAATAAACTC‑TTTCAACCAACTCATTGAAAGTACTACTTATTCC‑GATAATTCACGTTTACGGAAGAACAGCACGACGCTGGCGACAATACAGACCGCCACGCCAACGCCAATAATCCCAAGCGACATCAATTCAGAAATCGACCAATCGAACA‑TATTG‑CCCACGGACAACGCTGAGATTTTCGCACTTTCACCGGCAAAACTGAAACCGCCTTTAAGCGCCATTTCAGGGAAGTACGGCGCGAACTg > 2:213040/1‑251 (MQ=255) tCCCAATAACCTC‑TTTCAGCCAACTCATTGAAAGTACTCCTTATTCC‑GATAATTCACGTTTACGTAAGAACAGCACGACGCTGGCGACAATACCGACCGCCACGACAACGCCAATAATCCCAAGCGACATCAATTCAGAAATCGACCAATCGAACA‑TATTG‑CCCACGGACAACGCTGAGATTTGCGCACTTTCACCGGCAAAACTGAAACCGCCTTTGAGCGCCATTTCAGTGAAGAAAGGCGCGAACTgg > 2:178649/1‑251 (MQ=255) ccAATAACCTC‑TTTCAGCCAACTCATTGAAAGTACTCCTTTTTCG‑GAAAATTCCCGTT‑AAGGAAGAACAGCCCCAACCCGGCGAAAATACCGACCGCCACGACAACGCCAATAATCCCCAGCGACATCAATTCAGAAATCGACCAAACGAACA‑TATTG‑CCCACGGACAACGCTGAGATTTGGGCACTTTCACCGGCAAAACTGAAACCGCCTTTGAGCGCCATTTCAGGGGAGTAAGGCGCGAACTGGGTg > 1:519268/1‑251 (MQ=255) ggtgtgctcttccgatcaaccTCATTGAAAGTCCTCCTTATCCC‑AAAAATCCCCGTTAACTAAAAAACACCCCGACGCGGGCGACAATCCCGACCGCCACGACAACGCCAATAATCCCAAGCGACATCAATTCAGAAATCGACCAATCGAACA‑TATTG‑CCCACGGACAACGCTGAGATTTGCGCACTTTCACCGGCAAAACTGAAACCGCCTTTGAGCGCCATTTCAGTGAAGTAAGGCGCGAACTGGGTg < 1:31104/231‑1 (MQ=255) cccttctcaccaacagcatgaaaaGTACTC‑TTATTCCCAAAAATTCACTTTTAGATAAGAACACCACGCCGCTGGAGAAAATCCCGACCGCCACGACAACGCCAATAACCCCAAGCGACATCAATTCAGAAATCGACCAATCGAACA‑TATTG‑CCCACGGACAACGCTGAGATTTGCGCACTTTCACCGGCAAAACTGAAACCGCCTTTGAGCGCCATTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGATc < 1:50711/230‑1 (MQ=255) c‑tTTCAGCCAACTCATTGAAAGTACTCCTTATTCC‑GCTAATTCACGTTTACGTAAGAACAGCACGACGCTGGCGACAATCCAGACCGCCACGACAACGCCAATAATCCCAAGCGACATCAATTCAGAAATCGACCAATCGAACA‑TATTG‑CCCACGGACAACGCTGAGATTTGCGCACTTTCa > 2:554633/1‑182 (MQ=255) c‑tTTCAGCCAACTCATTGAAAGTACTCCTTATTCC‑GATAATTCACGTTTACGTAAGAACAGCACGACGCTGGCGACAATACCGACCGCCACGACAACGCCAATAATCCCAAGCGACATCAATTCAGAAATCGACCAATCGAACA‑TATTG‑CCCACGGACAACGCTGAGATTTGCGCACTTTCACCGGCAAAACTGAAACCGCCTTTGAGCGCCATTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGATcagc > 2:223523/1‑251 (MQ=255) c‑tTTCAGCCAACTCATTGAAAGTACTCCTTATCCC‑GATAATTCACGTTTACGAAAGAACAGCACGACGCTGGCGACAAAACCGACCGCCACGACAACGCCAATAATCCCAAGCGACATCAATTCAGAAATCGACCAATCGAACA‑TATTG‑CCCACGGACAACGCTGAGATTTGCGCACTTTCa < 1:554633/182‑1 (MQ=255) cAGCCAACTCATTGAAAGTACTCCTTATTCC‑GATAATTCACGTTTACGTAAGAACAGCACGACGCTGGCGACAATACCGACCGCCACGACAACGCCAATAATCCCAAGCGACATCAATTCAGAAATCGACCAATCGAACA‑TATTG‑CCCACGGACAACGCTGAGATTTGCGCACTTTCACCGGCAAAACTGAAACCGCCTTTGAGCGCCATTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAgg > 1:517443/1‑250 (MQ=255) aaCTCATTGAAAGTACTCCTTATTCC‑GATAATTCACGTTTACGTAAGAACAGCACGACGCTGGCGACAATACCGACCGCCACGACAACGCCAATAATCCCAAGCGACATCAATTCAGAAATCGACCAATCGAACA‑TATTG‑CCCACGGCCAACGCTGAGATTTGCGCACTTTCACCGGCAAAACTGAAACCGCCTTTGAGCGCCATTTCAGTGAAGTAAGGCGCGAACTGGGTgagatcggaagagagtcgg > 2:31104/1‑233 (MQ=255) ccTCATTAAAAGTCCTCCTTATCCC‑GAAAATCCCCGTTAACATAAAAACACCACGACCCGGGCGACAATACCGACCGCCACGACAACGCCAATAATCCCAAGCGACATCAATTCAGAAATCGACCAATCGAACA‑TATTG‑CCCACGGACAACGCTGAGATTTGCGCACTTTCACCGGCAAAACTGAAACCGCCTTTGAGCGCCATTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTaa < 1:413618/250‑1 (MQ=255) aTTGAAAGTACTCCTTATTCC‑GATAATTCACGTTTACGTAAGAAAAGCACGACGCTGGCGACAATACCGACCGCCACCACAACGCCAATAATCCCAAGCGACATCAATTCAGAAATCGACCAATCGAACA‑TATTG‑CACACGGACAACGCTGAGATTTGAGCACTTTCACCGGCAAAACTGAAACCGCCTTTGAGCGCCATTTCAGTGCAGTAAGGCGCGAACTGGGAGGCGATCAGCAGGACGGTAatcat > 1:31453/1‑251 (MQ=255) tACTCCTTATTCC‑GATAATTCACGTTTACGTAAGAACAGCACGACGCTGGCGACACTACCGACCGCCCCGCCAACGCCAATAATCCCAAGCGACATCAATTCAGAAATCGACCAATCGAACA‑TATTG‑CCCACGGACAACGCTGAGATTTGCGCACTTTCACCGGCAAAACTGAAACCGCCTTTGAGCGCCATTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATGATCACGATg > 2:70543/1‑250 (MQ=255) tCC‑GATAATTCACGTTTACGTAAGAACAGCACGACGCTGGCGACAATACCGACCGCCACGACAACGCCAATAATCCCAAGCGACATCAATTCAGAAATCGACCAATCGAACA‑TATTG‑CCCACGGACAACGCTGAGATTTGCGCACTTTCACCGGCAAAACTGAAACCGCCTTTGAGCGCCATTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATCATCACGATGACCCCGCTTAt > 1:237761/1‑251 (MQ=255) aTAATTCACGTTTACGTAAGAACAGCACGACGCTGGCGACAATACCGACCGCCACGACAACGCCAATAATCCCAAGCGACATCAATTCAGAAATCGACCAATCGAACA‑TATTG‑CCCACGGACAACGCTGAGATTTGCGCACTTTCACCGGCAAAACTGAAACCGCCTTTGAGCGCCATTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATCATCACGATGACCCCGCTTATCAAc > 1:171333/1‑251 (MQ=255) ttCACGTTTACGTAAGAACAGCACGACGCTGGCGACAATACCGACCGCCACGACAACGCCAATAATCCCAAGCGACATCAATTCAGAAATCGACCAATCGAACA‑TATTG‑CCCACGGACAACGCTGAGATTTGCGCACTTTCACCGGCAAAACTGAAACCGCCTTTGAGCGCCATTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGGAATCATCACGCTGACCCCGCTTATAAACGTcc > 2:194478/1‑251 (MQ=255) tCACGTTTACGTAAGAACAGCACGACGCTGGCGACAATACCGACCGCCACGACAACGCCAATAATCCCAAGCGACATCAATTCAGAAATCGACCAATCGAACA‑TATTG‑CCCACGGACAACGCTGAGATTTGCGCACTTTCACCGGCAAAACTGAAACCGCCTTTGAGCGCCATTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATCATCACGATGACCCCGCTTATCAACGTCCt > 1:547421/1‑251 (MQ=255) tACGTAAGAACAGCACGACGCTGGCGACAATACCGACCGCCACGACAACGCCAATAATCCCAAGCGACATCAATTCAGAAATCGACCAATCGAACA‑TATTG‑CCCACGGACAACGCTGAGATTTGCGCACTTTCACCGGCAAAACTGAAACCGCCTTTGAGCGCCATTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATCATCACGATGACCCCGCTTATCAACGTCCTGACCAgg > 1:451260/1‑251 (MQ=255) tAAGAACAGCACGACGCTGGCGACAATACCGACCGCCACGACAACGCCAATAATCCCAAGCGACATCAATTCAGAAATCGACCAATCGAACA‑TATTG‑CCCACGGACAACGCTGAGATTTGCGCACTTTCACCGGCAAAACTGAAACCGCCTTTGAGCGCCATTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATCATCACGATGACCCCGCTTATCAACGTCCTGACCAGGtctc > 1:473904/1‑251 (MQ=255) aaaaGCACGCCGCGGGCAACAATCCCGACCGCCACGACAACGCCAATAATCCCAAGCGACATCAATTCAGAAATCGACCAATCGAACA‑TATTG‑CCCATGGACAACGCTGAGATTTGCGCACTTTCACCGGCAAAACTGAAACCGCCTTTGAGCGCCATTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATCATCACGATGACCCCGCTTATCAACGTCCTGACCAGGTCTCcgcg < 1:194478/248‑1 (MQ=255) cAGCACGACGCTGGCGCCAATACCGACCGCCACGACAACGCCAATAATCCCAAGCGACATCAATTCAGAAATCGACCAATCGAACA‑TATTG‑CCCACGGACAACGCTGAGCTTTGCGCACTTTCACCGGCAAAACTGAAACCGCCTTTGAGCGCCATTTCAGTGAAATAAGGCGCGAACTGGGTGGCGATAAGCAGGACGGGAATCATCACGATGACCCCGCTTATCAACGTCTTGCCCAGTTCTCCACgg > 2:479193/1‑250 (MQ=255) aGCACGCCCCTGGCAACAATCCCCACCGCCACGACAACGCCAATAATCCCAAGCGACATCAATTCAGAAATCGACCAATCGAACA‑TATTG‑CCCACGGACAACGCTGAGATTTGCGCACTTTCACCGGCAAAACTGAAACCGCCTTTGAGCGCCATTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATCATCACGATGACCCCGCTTATCAACGTCCTGACCAGGTCTCCGCGGTg < 1:433338/251‑1 (MQ=255) acgacgCTGGCGACAATACCGACCGCCACGACAACGCCAATAATCCCAAGCGACATCAATTCAGAACTCGCCCAATCGAACA‑TATTG‑CCCACGGACAACGCTGAGAGTTGCGCACTTTCACCGGCAAAACTGAACACGCCATTGAGCGCCATTTCAATGAAGTAAGGCGCGAACTGGGTGGCGATCATCAGGACGGTAATCAACACGCTGGCCCCGCTTATCACCGCCCTGCACAGGTCTACGAGGTgtat > 2:136555/1‑248 (MQ=255) acgCTGGCGACAATACCGACCGCCACGACAACGCCAATAATCCCAAGCGACATCAATTCAGAAATCGACCAATCGAACA‑TATTG‑CCCACGGACAACGCTGAGATTTGCGCACTTTCACCGGCAAAACTGAAACCGCCTTTGAGCGCCATTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATCATCACGATGACCCCGCTTATCAACGTCCTGACCAGGTCTCCGCGGTGGATAAc > 1:538192/1‑251 (MQ=255) aaccccgaccgCCACGACAACGCAAATAATCCCAAGCGACATCAATACAGAAATCGACCAATCGAACA‑TATTG‑CCCACGGACAACGCTGAGATTTGCGCACTTTCACCGGCAAAACTGAAACCGCCTTTGAGCGCCATTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACAGTAATCATCACGATGACCCCGCTTATCAACGTCCTGACCAGGTCTCCGCGGTGGATAACCGTAGCCATAc < 1:419473/247‑1 (MQ=255) cgccAACGCCAATAATCCCAAGCGCCATCAATTGAGAAACCGACCAATCGAACA‑‑ATGGGCATACGGATAACGCTGAGATTTGCGCACTTTAACCGGCAAACCCGAATCCGCCTTTGAGCGCCATTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATCATCACGACGACCCCGCTTATCCACGTCCTGACCAGGTCTCCTCGGTGGATAACCGTAGCCATACAGATAAAGAACGGt < 1:541905/248‑1 (MQ=255) cgaaaaCGCCAATAATCCCAAGCGACATCAATTCAGAAATCGACAAATCGAACA‑TATTG‑CCCACGGACAACGCTGAGATTTGCTCACTTTCACCGGAAAAACTGAAACCGCCTTTGAGCGCCAGTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATCATCACGATGACCCCGCTTATCATCGTCCTTACCAGGTCTCCGCGGTGGATAACCGTAGCCATACAGATAAAGAACGGt < 1:213040/247‑1 (MQ=255) gCCAATAACCCCAAGCGACATCAATTCAGAAAGCGACAAATCGAACA‑TATGG‑CCCACGGACACCGCTGAGATTTGCGCACTTTCACCGGCAAAACTGAAACCGCCTTTGAGCGCCATTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATCATCACGATGACCCCGCTTATCAACGTCCTGACCAGGTCTCCGCGGTGGATAACCGTAGCCATACAGATAAAGAACGGTGCTACCg < 2:171333/251‑1 (MQ=255) ccAATAATCCCAAGCGACATCAATTCAGAAATCGACCAATCGAACA‑TATTG‑CCCACGGACAACGCTGAGATTTGCGCACTTTCACCGGCAAAACTGAAACCGCCTTTGAGCGCCATTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATCATCACGATGACCCCGCTTATCAACGTCCTGACCAGGTCTCCGCGGTGGATAACCGTAGCCATACAGATAAAGAACGGTGCTACCgg < 1:184979/251‑1 (MQ=255) ataatCCCAAGCGACATCAATTCAGAAATCGACCAATCGAACA‑TATTG‑CCCACGGACAACGCTGAGATTTGCGCACTTTCACCGGCAAAACTGAAACCGCCTTTGAGCGCCATTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATCATCACGATGACCCCGCTTATCAACGTCCTGACCAGGTCTCCGCGGTGGATAACCGTAGCCATACAGATAAAGAACGGTGCTACCGGc > 1:316926/1‑249 (MQ=255) taatCCCAAGAGACATCAATTCAGAAATCGACCAATCGAACA‑TATTG‑CCCACGGACAACGATGAGATTTGCGCACTTTCACCGGCAAAACTGAAACCGCCTTTGAGCGCCATTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGCTCAGCAGGACGGTAATCATCACGATGACCCCGCTTATCAACTTCCTAACCAGGTCTCCGCGGTGGATACCCGTCGCCATACAGATAAAGCACGGTGCTACCGGAAgg > 2:450563/1‑251 (MQ=255) atCCCAAGCGACATCAATTCAGACATCGACCAATCGAACA‑TATTG‑CCCACGGACAACGCTGCGATTTGCGCACTTTCACCGGCAAAACTGAAACCGCCTTTGAGCGCCATTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGCTCAGCAGGACGGTAATCATCACGATGACCCCGCTTATCAACGTCCTGACCAGGTCTCCGCGGTGGATAACCGTAGCCATACAGATAAAGAACGGTGCTACCGGCAGGtg > 2:321553/1‑250 (MQ=255) atCCCAAGCGACATCAATTCAGAACTCGCCCAATAGAACA‑TATTG‑CCCACGGCCAACGCTGAGCTTTGCGCACTTTCACCGGCAAAACTGAAACAGCCTTTGAGCGCCATTTCAGTGAAGTACGGCGCGAACTGGGTGGCGATCAGCAGGCCGGTAATCATCACGATGACCCCGCTTATCAACGTCCTGACACGGTCTCCGCGGTGGATAACCGTAGCCAAACAGAAAAAGAACGGTGCTACCGGCAGGtt > 2:349229/1‑250 (MQ=255) cccAAGCTACATCAATTCAGAAATCGACCAATCGAACA‑TATTG‑CCCACGGACATCGCTGAGATTTGCGCACGTGCCCCGGCAAAACGGAAACCGCCTTTGAGCGCCATTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATCATCACGATGACCCCGCTTATCAACGTCCTGACCAGGTCTCCGCGGTGGATAACCGTAGCCATACAGATAAAGAACGGTGCTACCGGCAGGTCTg < 2:538192/251‑1 (MQ=255) cAAGCGACATCAATTCAGAAATCGACCAATCGAACA‑TATTG‑CCCACGGACAACGCTGAGATTTGCGCACTTTCACCGGCAAAACTGAAACCGCCTTTGAGCGCCATTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATCATCACGATGACCCCGCTTATCAACGTCCTGACCAGGTCTCCGCGGTGGATAACCGTAGCCATACAGATAAAGAACGGTGCTACCGGCAGGGCTGCg > 1:152735/1‑251 (MQ=255) aGCGACATCAATTCAGAAATCGACCAATCGAACA‑TATTG‑CCCACGGACAACGCTGAGATTTGCGCACTTTCACCGGCAAAACTGAAACCGCCTTTGAGCGCCATTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATCATCACGATGACCCCGCTTATCACCGTCCTGACCAGGTCTCCGCGGTGGATAACCGTAGCCATACAGATAAAGAACGGTGCTACCGGCAGGGCTGCg > 1:275259/1‑249 (MQ=255) cGACATCAATTCAGAAATCGACCAATCGAACA‑TATTG‑CCCACGGACAACGCTGAGATTTGCGCACTTTCACCGGCAAAACTGAAACCGCCTTTGAGCGCCATTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATCATCACGATGACCCCGCTTATCAACGTCCTGACCAGGTCTCCGCGGTGGATAACCGTAGCCATACAGATAAAGAACGGTGCTACCGGCAGGTCTGCCAggg > 1:206218/1‑251 (MQ=255) aCATCAATTCAGAAATCGACCAACCGAACA‑TATTG‑CCCACGACCAACGCTGTGATTTGCGCACTTTCACCGGAAAAACTGAAACCGCCTTTGAGCGCCAGTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATCATCACGATGACCCCGCTTATCAACGTCCTGACCAGGTCTCCGCGGTGGATAACCGTAGCCATACAGATAAAGAACGGTGCTACCGGCAGGTCTGCGAGGGGt < 2:237761/251‑1 (MQ=255) atccAGAAACCGCCCAACCGAACA‑TATTT‑CCCACGGACAACGCTGAGATTTGACCACTGCCACCGGCAAAAGTGAACCCGCCTTTGAGCGCCATTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATCATCACGATGACCCCGCTTATCAACGTCCTGACCAGGTCTCCGCGGTGTATAACCGTAGCCATACAGATAAAGAACGGTGCTACCGGCAGGTCTGCGTGGGGTAACA‑Ct < 2:321452/248‑1 (MQ=255) aGAAATCGACCAATCGAACA‑TATTG‑CCCACGGACAAAGCTGAGATTTGCGCACTTTCACCGGCAAAACTGACACCGCCTTTGCGCGCCATTTCAGTGAAGTAAGGCGCGCAATGGGGGGCGATCAGCAGGACGGGAATCATCACGCTGACCCCGCTTAGCAACGTCCTGACCAGGTATCCGCGGTGGATAACCGTAGCCATACAGATAAAGAGCGGTGCTACCGGCAGGTATGCG‑GGGGGAACAACTttgt > 1:63675/1‑251 (MQ=255) aaaaccGACCAATCGAAAA‑TAGTC‑CCCACGGACAACTCTGAGATTTGCGCGTTTTCACCGGCAAAACTGAAACCGCCTTTGAGCGCCATTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATCATCACGATGACCCCGCTTATCAACGTCCTGACCAGGTCTCCGCGGTGGATAACCGTAGCCATACAGATAAAGAACGGTGCTACCGGCAGGTCTGCGAGGGGTAACA‑CTttgtt < 2:473904/246‑1 (MQ=255) aaaaTCGACCAATCGAACA‑TATTG‑CCCACGGACAACGCTGAGATTTGCGCACTTTCACCGGCAAAACTGAAACCGCCTTTGAGCGCCATTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATCATCACGATGACCCCGCTTATCAACGTCCTGACCAGGTCTCCGCGGTGGATAACCGTAGCCATACAGATAAAGAACGGTGCTACCGGCAGGTCTGCGAGGGGTAACA‑CTttgtt < 1:223523/250‑1 (MQ=255) aaaTCGCCCAATCGAACA‑TATTG‑CCCACGGACAACTCTGAGATTTGCGCACTTTCACCGGCAAAACTGAAACCGCCTTTGAGCGCCATTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATCATCACGATGACCCCGCTTATCAACGTCCTGACCAGGTCTCCGCGGTGGATAACCGTAGCCATACAGATAAAGAACGGTGCTACCGGCAGGTCTGCGAGGGGTAACA‑CTttgttg < 2:519268/251‑1 (MQ=255) tCGACCAATCGAACA‑TATTG‑CCCACGGACAACGCTGAGATTTGCGCACTTTCACCGGCAAAACTGAAACCGCCTTTGAGCGCCATTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATCATCACGATGACCCCGCTTATCAACGTCCTGACCAGGTCTCCGCGGTGGATAACCGTAGCCATACAGATAAAGAACGGTGCTACCGGCAGGACTGCCGGGGGTAACC‑CTTTGGTGccc > 1:139512/1‑251 (MQ=255) | TTGTCGATAACCCAGTTCATCCCCAAC‑TGCGCATCAAAACTCGGGTCGCCGGGCAATGCACGTAGATGGCACATGGCGATGACCGCTTTTTCCGTCCCAATAACCTC‑TTTCAGCCAACTCATTGAAAGTACTCCTTATTCC‑GATAATTCACGTTTACGTAAGAACAGCACGACGCTGGCGACAATACCGACCGCCACGACAACGCCAATAATCCCAAGCGACATCAATTCAGAAATCGACCAACCGAACA‑TATTG‑CCCACGGACAACGCTGAGATTTGCGCACTTTCACCGGCAAAACTGAAACCGCCTTTGAGCGCCATTTCAGTGAAGTAAGGCGCGAACTGGGTGGCGATCAGCAGGACGGTAATCATCACGATGACCCCGCTTATCAACGTCCTGACCAGGTCTCCGCGGTGGATAACCGTAGCCATACAGATAAAGAACGGTGCTACCGGCAGGTCTGCGAGGGGTAACA‑CTTTGTTGCCC > NC_000913/4528796‑4529281 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |