| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,311,337 | C→T | A236T (GCA→ACA) | alsB ← | D‑allose ABC transporter periplasmic binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,311,337 | 0 | C | T | 98.5% | 221.3 / NA | 68 | A236T (GCA→ACA) | alsB | D‑allose ABC transporter periplasmic binding protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (35/32); minor base G (0/1); total (35/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.85e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.79e-01 | |||||||||||
TCATTCAGTTTTATTGAGTGACCAGGATTGAATCGACCAGTTTAAATTCCGGTGCTTTATCCAGCGGGATAACCTTGCCGGATTTCTCAGCGTCAACCATCAGCTTCAG‑ACCCGTTGCGCCGA‑TATCCGCCGGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGCGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTGAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCAC > NC_000913/4311097‑4311576 | tcatTCAGTTTTATTGAGTGACCAGGATTGAATCGACCAGTTTAAATTCCGGTGCTTTATCCAGCGGGATAACCTTGCCGGATTTCTCAGCGTCAACCATCAGCTTCAG‑ACCCGTTGCGCCGA‑TATCCGCCGGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTg > 1:379764/1‑250 (MQ=255) tCAGTTTTATTGAGTGACCAGGATTGAATCGACCAGTTTAAATTCCGGTGCTTTATCCAGCGGGATAACCTTGCCGGATTTCTCAGCGTCAACCATCAGCTTCAG‑ACCCGTTGCGCCGA‑TATCCGCCGGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCa < 1:126723/250‑1 (MQ=255) aGTTTTAGTGAGGGACCGGGATTGAATCGACCAGTCTTAATACCGGTGCTTTATCCAGAGGGAGAATCTTGCCGGTGTGCTCAGCGTCATACATCAGCTTCAG‑TCCATTTGCGCCGG‑TATCCGCCGGGTTCTGGGCACCCGTCTCTGTCATTTGTCCGGCTTCCTCTATTTTGCGGGCTTCCGGAATGCCATCTGTACCGTCGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAaca < 2:62130/251‑1 (MQ=255) gTTTTATTGAGTGACCAGGATTGAATCGACCAGTTTAAATTCCGGTGCTTTATCCAGCGGGATAACCTTGCCGGATTTCTCAGCGTCAACCATCAGCTTCAG‑ACCCGTTGCGCCGA‑TATCCGCCGGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAacac > 1:112984/1‑251 (MQ=255) aTTGAGTGACCAGGATTGAATCGACCAGTTTAAATTCCGGTGCTTTATCCAGAGGGATAACCTTGCCGGATTTCTCAGCGTCAACCATCAGCTTCAG‑ACCCGTTGCGCCGA‑TATCCGCCGGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCAACCATTTTGCGGGCTTCCGGAATGCCATCTGAACCGACGACCAGCCCTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCAtt > 1:357377/1‑251 (MQ=255) tGAGTGGCCAGGATTGAATCGACCAGTTGAAATTCCGGTGCTTTATCCAGCGGGATAACCTTGCCGGATTTCTCAGCGTCAACCATCAGCTTCAG‑ACCCGTTGCGCCGA‑TATCCGCCGGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTg < 2:238686/250‑1 (MQ=255) aGGATTGAATCGACCAGTTTAACTTCCGGTGCTTTATCCAGCGGGATAACCTTGCCGGATTTCTCAGCGTCAACCATCAGCTTCAG‑ACCCGTTGCGCCGA‑TATCCGCCGGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAg > 2:455470/1‑229 (MQ=255) aGGATTGAATCGACCAGTTTAAATTCCGGTGCTTTATCCAGCGGGATAACCTTGCCGGATTTCTCAGCGTCAACCATCAGCTTCAG‑ACCCGTTGCGCCGA‑TATCCGCCGGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAg < 1:455470/229‑1 (MQ=255) aGGATTGAATCGACCAGTTTAAATTCCGGTGCTTTATCCAGCGGGATAACCTTGCCGGATTTCTCAGCGTCAACCATCAGCTTCAG‑ACCCGTTGCGCCGA‑TATCCGCCGGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTc > 1:409822/1‑251 (MQ=255) aGGATTGAATCGACCAGTTTAAATTCCGGTGCTTTATCCAGCGGGATAACCTTGCCGGATTTCTCAGCGTCAACCATCAGCTTCAG‑ACCCGTTGCGCCGA‑TATCCGCCGGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTc > 1:120051/1‑251 (MQ=255) aGGATTGAATCGACCAGTTTAAATTCCGGTGCTTTATCCAGCGGGATAACCTTGCCGGATTTCTCAGCGTCAACCATCAGCTTCAG‑ACCCGTTGCGCCGA‑TATCCGCCGGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTc > 1:177599/1‑251 (MQ=255) gtaTTGAATCGTCCAGTTTAAATTCCGTTGCTTTATCCAGCGGGATAACCTTGCCTGATTTCTCAGCGTCAACCATCAGCTTCAG‑ACCCGTTGCGCCGA‑GATCCGCCGGGTTCTGGGCAACCGGCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCa < 2:379764/249‑1 (MQ=255) ggATTGACTCGACCCGTTTAAATTCAGGTGCTTTCTCCAGCGGGATAACCTTGCCGGATTTATCAGCGTCAACCATCAGCTTCAG‑ACCCGTTGCGCCGA‑TATCCGCCGGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGCATGACATCTGTACCGACGACCAGCACTTTTCCCGTTTTTACGGCGTTTGTGCCTGCCTGAGCAACACCCATTGcaacagtgtc > 2:529060/1‑241 (MQ=255) ggATTGAATCGACCATTCTAAATTCCTGGGCGTTACCCCGCGGGATAACCGTGCCTTATTTCTCAGCGTCCACCATCCGCTTCCG‑ACCCTTTGCTCCTAGTA‑CCGCCGGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCCCCATTTTGCGGGCTTCCGGAATGCCATCTGTTCCGACTACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCgtgt < 2:436820/249‑1 (MQ=255) ccctactcgacgctcttcctatgtcTTTATCCAGCGGGATAACCTTGCCGGATTTCTCAGCGTCAACCACCAGCTTCAG‑ACCCGTGGCGCCGA‑TAGCCGCCGGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTcgcg < 2:496954/227‑1 (MQ=255) aatccacatctttAAATTCCTGTGCTTTATCCAGCGGGATAACTCTGCCGGATTTCTCAGCGTCAACCATCAGCTTCAG‑ACCTGTTGCGCCGA‑TATCCGCCGGGTTCTGGGCAACCGTCTCGGTCATTTGTCCGGCGTCCACCATTTTGCGGTCTTCCGGAATGCCAGCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTTTGACTGCCTGATCAACACCCATTGCCATCGTGTCATTcgcg < 2:73421/241‑1 (MQ=255) aaTCGACCAGTTTAAATTCCGGTGCTTTATCCAGCGGGATAACCTTGCCGGATTTCTCAGCGTCAACCATCAGCTTCAG‑ACCCGTTGCGCCGA‑TATCCGCCGGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTcgcg > 1:261637/1‑251 (MQ=255) cGACCAGTTTAAATTCCGGTGCTTTATCCAGCGGGATAACCTTGCCGGATTTCTCAGCGTCAACCATCAGCTTCAG‑ACCCGTTGCGCCGA‑TATCCGCCGGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCaa < 1:456729/251‑1 (MQ=255) ccAGTTTAAATTCCGGTGCTTTATCCAGCGGGATAACCTTGCCGGATTTCTCAGCGTCAACCATCAGCTTCAG‑ACCCGTTGCGCCGA‑TATCCGCCGGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAAt > 1:5293/1‑249 (MQ=255) cAGTTTAAATTCCGGTGCTTTATCCAGCGGGATAACCTTGCCGGATTTCTCAGCGTCAACCATCAGCTTCAG‑ACCCGGTGCGCCGA‑TATCCGCCGGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGa < 2:69656/251‑1 (MQ=255) cGGTGATTTATCATGCGTGATAATCTTGCCGTATTTCTCAGCGTCAACCATCAGCTTCAG‑ACCCGTTTCGCCGC‑TATTCTCCGGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCTCCATTGTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCAGCGTGTCATTCGCGCAATAGATCGCTTTAatat < 2:101700/251‑1 (MQ=255) gTGCTTTATCCAGCGGGATAACCTTGCCGGATTTCTCAGCGTCAACCATCAGCTTCAG‑ACCCGTTGCGCCGA‑TATCCGCCGGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGATCGCTTTAATATTc < 1:239999/251‑1 (MQ=255) cTTTATCCAGCGGGATAACCTTGCCGGATTTCTCAGCGTCAACCATCAGCTTCAG‑ACCCGTTGCGCCGA‑TATCCGCCGGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGATCGCTTTAATATTCgg > 1:294787/1‑250 (MQ=255) cTTTATCCAGCGGGATAACCTTGCCGGATTTCTCAGAGTCAACCATCAGCTTCAG‑ACCCGTTGCGCCGA‑TATCCGCCGGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTcgcg > 1:496954/1‑227 (MQ=255) ttATCCAGCGGGATAACCTTGCCGGATTTCTCAGCGTCAACCATCAGCTTCAG‑ACCCGTTGCGCCGA‑TATCCGCCGGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGAt < 1:334063/250‑1 (MQ=255) aTCCAGCGGGATAACCTTGCCGGATTTCTCAGCGTCAACCATCAGCTTCAG‑ACCCGTTGCGCCGA‑TATCCGCCGGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTAc > 1:545415/1‑251 (MQ=255) ccAGCGGGATAACCTTGCCGGATTTCTCAGCGTCAACCATCAGCTTCAG‑ACCCGTTGCGCCGA‑TATCCGCCGGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCAGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGt > 2:122168/1‑251 (MQ=255) aCCTTGCCGGATTTCTCAGCGTCAACCATCAGCTTCAG‑ACCCGTTGCGCCGA‑TATCCGCCGGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGTTCGCTTTAATATTCGGTTTACGTTGCAACACGtt > 2:268165/1‑251 (MQ=255) ttGCCGGATTTCTCAGCGTCAACCATCAGCTTCAG‑ACCCGTTGCGCCGA‑TATCCGCCGGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGt > 1:256526/1‑251 (MQ=255) gTCAACCATCAGCTTCAG‑ACCCGTTGCGCCGA‑TATCCGCCGGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACCTCCAGTGCtt > 2:10180/1‑251 (MQ=255) cacccATCAGCGTCAGCACCC‑TTGCTCCGT‑TATCCGCTCGGTACTGGGCAACCGTCGCGGTCAATTTTCCGGCGTCCACCATTTTGCGGGCTTCCGTAATTCCAGCTGTACCGCCGATCAGCTCTTTTCCCGTTTCTCCGGCTTTTTTGACTGCCTGAGCATCCCCCTTTGCCATCGTGTCATTCGCGCAATAGACCTCGTTAATAGTTGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCtta < 2:357377/247‑2 (MQ=255) cAGCTTCAG‑ACCCGTTGAGCCGA‑TATCCGCCGGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCACCACCCATTGCCATCGTGCCATTCGCGCAAAACATCGCTTTAATATTCGTATTACGTTGCCACCCGTTAGAGGCGACACCCGATGCTTTATTGCgg > 2:415168/1‑250 (MQ=255) tCAG‑ACCCGTTGCGCCGA‑TATCCGCCGGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCa < 1:529060/250‑1 (MQ=255) aCCCGTTGCGCCGC‑TATCCGCCGGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGTCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGAAATAGATCGCTTTCATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCgg > 2:49072/1‑251 (MQ=255) tGCGCCGA‑TATCCGCCGGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAggct > 1:14063/1‑251 (MQ=255) cGA‑TATCCGCCGGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGgctggctg > 2:443929/1‑251 (MQ=255) cGA‑TATCCGCCGGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCATGAGCAACACCCATTACCATCGTGTCATTCGCGCAATAGCTCGCTTTAATCTTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGgctggctg > 1:66539/1‑251 (MQ=255) a‑tatCCGCCGGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCtggctggc > 1:424592/1‑251 (MQ=255) cgccgGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCa > 1:77779/1‑209 (MQ=255) cgccgGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCa < 2:77779/209‑1 (MQ=255) ggcggtttttGGGCAACCGGCGCGGTCATTTTGCCGGCTTCCCCCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGATCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGTCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAg < 1:163525/242‑1 (MQ=255) cgGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGCTTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGCCAAGCt > 2:242752/1‑251 (MQ=255) gggTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCTATCGTGTCATTCGCGCAATAGATCGCtt < 2:400052/163‑1 (MQ=255) gggTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGATCGCtt > 1:400052/1‑163 (MQ=255) gggCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCt < 1:92329/249‑1 (MQ=255) cAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGgctt > 1:410000/1‑251 (MQ=255) aCCGTCGCGGTCATTTGGCCGGCGTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCAGCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTTGCGACAAGCTTGATCTGgcttgc < 2:54965/251‑1 (MQ=255) tttgttgatgtgtccagtatctaccaTTTTTCGGGATTCCGGAATGCCTGTTGTATCGGCGTGCAGCACTTCTCCTGTTTTTCCGGAGGTTGGGACTGCCTGGGCAACTCCCATTGCCATCGTGGCATGCGCGCAATAGATCGCATTAATATTCAGATTGCGTTGCAACACGTTAGTGGCGACATCCAGTGGTTTAATTCTGTCCCTTTCGACAGACTGGCGGTCGACTATCATGATCTGGCTTGCtttt < 2:69116/228‑1 (MQ=255) gcgGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTTCCATCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGc < 2:98917/179‑1 (MQ=255) gcgGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGc > 1:98917/1‑179 (MQ=255) ggTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTGa < 1:38826/251‑1 (MQ=255) gTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTGAAGGCTTc < 1:268165/250‑1 (MQ=255) cctgcgtCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCAACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGCCTGCCTGAGCAACTCCCATTGCCATCGTGTCAGTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCTACATCCAGTGCTTTAATGCGGTCCCTTTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTGAAGGCTTCGGt < 2:403969/245‑1 (MQ=255) gCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCg < 2:402580/195‑1 (MQ=255) gCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCg > 1:402580/1‑195 (MQ=255) ttCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGATCg > 2:11455/1‑125 (MQ=255) ttCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGATCg < 1:11455/125‑1 (MQ=255) caccaTTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTGAAGGCTTCGGTGGCACCAt > 2:439973/1‑251 (MQ=255) caTTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCAGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTGAAGGCTTCGGTGGCACCATTac < 1:290815/251‑1 (MQ=255) cTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAggctg > 1:365902/1‑184 (MQ=255) cTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAggctg < 2:365902/184‑1 (MQ=255) ccGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTGAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCg > 2:191881/1‑251 (MQ=255) gAATGCCCTCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTTCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGCCAAGCTTGTTCTGGCTTGATTTTTTGCAGGTTATGGGGGCACCATTACGACGCGTTTCACCGGat > 2:497231/1‑250 (MQ=255) cATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTGAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTa < 1:122168/251‑1 (MQ=255) ttCCCGTTTTTCCGGCGTTTGTGACTGCCTGATCAACTCCCAGTGCCATCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGGCATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTGAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGc < 2:112984/250‑1 (MQ=255) tttttCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATc > 1:110415/1‑109 (MQ=255) tttttCCGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATc < 2:110415/109‑1 (MQ=255) ccGGCGTTTGTGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTGAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTcaccac < 1:563326/250‑1 (MQ=255) | TCATTCAGTTTTATTGAGTGACCAGGATTGAATCGACCAGTTTAAATTCCGGTGCTTTATCCAGCGGGATAACCTTGCCGGATTTCTCAGCGTCAACCATCAGCTTCAG‑ACCCGTTGCGCCGA‑TATCCGCCGGGTTCTGGGCAACCGTCGCGGTCATTTGTCCGGCTTCCACCATTTTGCGGGCTTCCGGAATGCCATCTGTACCGACGACCAGCACTTTTCCCGTTTTTCCGGCGTTTGCGACTGCCTGAGCAACACCCATTGCCATCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTGAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCAC > NC_000913/4311097‑4311576 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |