| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,219,752 | C→T | S386F (TCC→TTC) | aceK → | isocitrate dehydrogenase kinase/phosphatase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,219,752 | 0 | C | T | 94.1% | 94.5 / NA | 34 | S386F (TCC→TTC) | aceK | isocitrate dehydrogenase kinase/phosphatase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (18/14); minor base G (0/2); total (18/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.14e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTACAGGGCTGTAATGAGCAGTTCATTGAAGCGCCGGGTATTCGTGGAATGGTGATGTTGGTGTTTACGCTGCCGGGCTTTGATCGGGTATTCAAAGTCATCAAAGACAGGTTCGCGCCGCAGAAAGAGATGTCTGCCGCTCACGTTCGTGCCTGCTATCAACTGGTGAAAGAGCACGATCGCGTGGGCCGAATGGCGGACACCCAGGAGTTTGAAAACTTTGTGCTGGAGAAGCGGCATATTTCCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCGGATGGTGCCGCTCAATATCTGGCTGGAACAAGTGGAAG‑GTCAGCAGTTGCGCGACGCCATTGAAGAATACGGTAACGCTATTCGCCAGCTTGCCGCTGCTAACATTTTCCCTGGCGACATGCTG‑TTTAAAAACTTCGGTGTCACCCG > NC_000913/4219508‑4219995 | cTACAGAGCTGTAATGAGCAGTTCATTGAAGCGCCGGGTATTCGTGGAGTGGTGATGTTGGTGTTTACGCTGCCGGGCTTTGATCGGGGATTCAAAGTCATCAAAGACAGGTTCGCGCCGCAGAATGAGATGTCTGCCGCCCACGTTCGTGCCTGCTATCAACTGGTGAAAGAGCACGATCGCGTGGGCCGAATGGCTGACACCCAGGAGTTTGAAAACTTTGTGCTGGAGAAGCGGCATTTTTTCCCGGc > 2:367143/1‑251 (MQ=255) aGGGCTGTAATGAGCAGTTCATTGAAGCGCCGGGTATTCGTGGAATGGTGATGTTGGTGTTTACGCTGCCGGGCTTTGATCGGGTATTCAAAGTCATCAAAGACAGGTTCGCGCCGCAGAAAGAGATGTCTGCCGCTCACGTTCGTGCCTGCTATCAACTGGTGAAAGAGCACGATCGCGTGGGCCGAATGGCGGACACCCAGGAGTTTGAAAACTTTGTGCTGGAGAAGCGGCATATTTTCCCGGCATTa < 1:449158/251‑1 (MQ=255) gggCTGTAATGAGCAGTTCATTGAAGCGCCGGGTATTCGGGGAATGGGTATGTTGGTGTTTACGCTGCCGGGCTTTGATCGGGTATTCAAAGTCATCAAAGACAGGGTCGCGCCGCAGAAAGAGATGTCTGCCGCTCACGTTCGTGCCTGCTATCAACTGGTGAAAGAGCACGATCTCGTGGGCCGAATGGCGGACACCCAGGAGTTTGAAACCTTTGTGCTGGAGAAGCGGCATATTTTCCCGTCATTaa < 2:513127/251‑1 (MQ=255) gTAATGAGCAGTTCATTGAAGCGCCGGGTATTCGTGGAATGGTGATGTTGGTGTTTACGCTGCCGGGCTTTGATCGGGTATTCAAAGTCATCAAAGACAGGTTCGCGCCGCAGAAAGAGATGTCTGCCGCTCACGTTCGTGCCTGCTATCAACTGGTGAACGAGCACGATCGCGTGGGCCGAATGGCGGACACCCAGGAGTTTGAAAACTTTGTGCTGGAGAAGCGGCCTATTTTCCCGGcc > 2:281600/1‑241 (MQ=255) gTAATGAGCAGTTCATTGAAGCGCCGGGTATTCGTGGAATGGTGATGTTGGTGTTTACGCTGCCGGGCTTTGATCGGGTATTCAAAGTCATCAAAGACAGGTTCGCGCCGCAGAAAGAGATGTCTGCCGCTCACGTTCGTGCCTGCTATCAACTGGTGAAAGAGCACGATCGCGTGGGCCGAATGGCGGACACCCAGGAGTTTGAAAACTTTGTGCTGGAGAAGCGGCATATTTTCCCGGCa < 1:281600/242‑1 (MQ=255) gAAGCGCCGGGTATTCGTGGAATGGTGATGTTGGTGTTGACGCTGCCGGGCTTTGATCGGGTATTCAAAGTCATCAAAGACAGGTTCGCGCCGCAGAAAGAGATGTCTGCCGCTCACGTTCGTGCCTGCTATCAACTGGTGAAAGAGCACGATCGCGTGGGCCGAATGGCGGACACCCAGGAGTTTGAAAACTTTGTGCTGGAGAAGCGGCATATTTTCCCGGCATTAATGGAATTACTGCTTCAGGAagc < 1:103668/251‑1 (MQ=255) gggTATTCGTGGAATGGTGATGTTGGTGTTTACGCTGCCGGGCTTTGATCGGGTATTCAAAGTCATCAAAGACAGGTTCGCGCCGCAGAAAGAGATGTCTGCCGCTCACGTTCGTGCCTGCTATCAACTGGTGAAAGAGCACGATCGCGTGGGCCGAATGGCGGACACCCAGGAGTTTGAAAACTTTGTGCTGGAGAAGCGGCATATTTTCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGaa > 1:301659/1‑250 (MQ=255) tATTCGTGGAATGGTGATGTTGGTGTTTACGCTGCCGGGCTTTGATCGGGTATTCAAAGTCATCAAAGACAGGTTCGCGCCGCAGAAAGAGATGTCTGCCGCTCACGTTCGTGCCTGCTATCAACTGGTGAAAGAGCACGATCGCGTGGGCCGAATGGCGGACACCCAGGAGTTTGAAAACTTTGTGCTGGAGAAGCGGCATATTTTCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGaaaaa > 1:499443/1‑250 (MQ=255) gTGGAATGGTGATGTTGGTGTTTACGCTGCCGGGCTTTGATCGGGTATTCAAAGTCATCAAAGACAGGTTCGCGCCGCAGAAAGAGATGTCTGCCGCTCACGTTCGTGCCTGCTATCAACTGGTGAAAGAGCACGATCGCGTGGGCCGAATGGCGGACACCCAGGAGTTTGAAAACTTTGTGCTGGAGAAGCGGCATATTTTCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCAcc > 1:121620/1‑251 (MQ=255) ttagctgcgcggttttGATCGGTTTTTAAATGTCATCAAAGACAGGGTCTCGCCTCAAAAATACATTCCTGCCGCTCAAGTTCGTTCCAGCTATCAACTGGTGAAAGAGCACGATCGCTTGGGCCGAATTGCGGACTCCCCGGAGTTTGAAAACTTTGTGCTGGAGAAGCTGCATATTTTCCCGTCATTAATTGAATTACTGCTTCAGGAAGCAGCGGTAAAAATCACCGATCTCGGCGAACAAATtgtg < 2:304813/237‑1 (MQ=255) cGCTGCCGGGCTTTGATCGGGTATTCAAAGTCATCAAAGACAGGTTCGCGCCGCAGAAAGAGATGTCTGCCGCTCACGTTCGTGCCTGCTATCAACTGGTGAAAGAGCACGATCGCGTGGGCCGAATGGCGGACACCCAGGAGTTTGAAAACTTTGTGCTGGAGAAGCGGCATATTTTCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGGGAtt > 1:179666/1‑251 (MQ=255) aGTCATCAAAGACAGGTTCGCGCCGCAGAAAGAGATGTCTGCCGCTCACGTTCGTGCCTGCTATCAACTGGTGAAAGAGCACGATCGCGTGGGCCGAATGGCGGACACCCAGGAGTTTGAAAACTTTGTGCTGGAGAAGCGGCATATTTTCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCGGATgg > 1:270773/1‑251 (MQ=255) aGTCATCAAAGACAGGTTCGCGCCGCAGAAAGAGATGTCTGCCGCTCACGTTCGTGCCTGCTATCAACTGGTGAAAGAGCACGATCGCGTGGGCCGAATGGCGGACACCCAGGAGTTTGAAAACTTTGTGCTGGAGAAGCGGCATATTTTCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCGGATgg > 1:406366/1‑251 (MQ=255) catcaAAGACAGGTTCGCGCCGCAGAAAGAGATGTCTGCCGCTCACGTTCGTGCCTGCTATCAACTGGTGAAAGAGCACGATCGCGTGGGCCGAATGGCGGACACCCAGGAGTTTGAAAACTTTGTGCTGGAGAAGCGGCATATTTTCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCGGATGGTGc > 1:559111/1‑251 (MQ=255) catcaAAGACAGGTTCGCGCCGCAGAAAGAGATGTCTGCCGCTCACGGTCGGGCCTGCTATCAACGGGTGAAAGAGCACGATCGCGTGGGCCGAATGGCGGACACCCAGGAGTTTGAAAACTTTGGGCTGGAGAAGCGGCATATTTTCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCGGATGGTg < 2:557947/250‑1 (MQ=255) aaGACAGGTTCGCGCCGCAGAAAGAGATGTCTGCCGCTCACGTTCGTGCCTGCTATCAACTGGTGAAAGAGCACGATCGCGTGGGCCGAATGGCGGACACCCAGGAGTTTGAAAACTTTGTGCTGGAGAAGCGGCATATTTTCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCGGATGGTGCCGCTc < 1:554370/251‑1 (MQ=255) ttCGCGCCGCAGAAAGAGATGTCTGCAGCTCTCGTTCGTGCCTGCTATCAACTGGTAAAAGAGCACGATCGCGTGGGCCGAATGGCGGACAAACAGTAGTTTGAAAACTTTGTGCTGGAGAAGCGGCATATTTTCCCGGCGTTAATAGAATTACTGCTTCAGGACGCAGCGGAGAACATGCCCGATCTCGACGAACAAATTGTGAATAGCCATATTTATATTGAgcggagtaaggtgcagcttaagatctg > 2:334786/1‑228 (MQ=255) tcgagcctcAGAAAGAGATGCCTGCCGCTCTCGTTCGTGCCTGCTATCAACTGGGTAAAGAGCACGATCGCGTGGGCCGAATGGCGGACACCCAGGAGTTTGAAAACGTTGTGCTGGAGAAGCGGCATATTTTCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCGGATGGTGCCGCTCAATATctg < 2:312179/242‑1 (MQ=255) tCGCGCCGCAGAAAGAGCTGTCTGCCGCTCACGTTCGTGCCTGCTATCAACTGGTGAAAGAGCACGATCGCGTGGGCCGAATGGCGGACACCCAGGAGTTTGAAAACTTTGTGCTGGAGAAGCGGCATATTTTCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGCACAAATTGAGATTCGCCATATTTATATTTAGCGGCGGGTAGTGCCGCtacaaatctgg > 2:246738/1‑241 (MQ=255) cgcgCCGCAGAAAGAGATGTCTGCCGCTCACGTTCGTGCCTGCTATCAACTGGTGAAAGAGCACGATCGCGTGGGCCGAATGGCGGACACCCAGGAGTTTGAAAACTTTGTGCTGGAGAAGCGGCATATTTTCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCGGATGGTGCCGCTCAATATctggc < 1:206/251‑1 (MQ=255) cgcAGAAAGAGAAGTACGCCGCTCTCGGTCGTGCCTGCGATCAACTTGTGAAAGAGCACGAGCGCGTGGTCTGAATGGCGGACTCCCAGGAGTTAGAAAACTTTGTGCTGGAGAAGCGGCATATTTGCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGACCTCGGCGAACAAATTGTGATTAGCCATCTTTATATTGATCGGCGGATTGTGCCGCTCAATATCGGGCTGGaa < 2:147752/251‑1 (MQ=255) agagATGTCTGCCGCTCACGGTCGTGCCTGCTATCAACTGGTGAAAGAGCACGATCGCGTGGGCCGAATGGCGGACACACAGGAGTTTGAAAACGTTGTGCTGGAGAAGCGGCATATTTTCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCGGATGGTGCTGCTCAATATCGGGCTGGAACAAGTgg < 1:103621/251‑1 (MQ=255) tGGTGAAAGAGCACGATCGCGTGGGCCGAATGGCGGACACCCAGGAGTTTGAAAACTTTGTGCTGGAGAAGCGGCATATTTTCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGGGCGGCGGATGGTGCCGCTCAATATCTGGCTGGAACAAGTGGAAG‑GTCAGCAGTTGCGCGCCGCCATTGAAGAATaatgt > 1:313881/1‑247 (MQ=255) agagCACGATCGCGTGGGCCGAATGGCGGCCACCCAGGAGTTTGAAAACTTTGTGCTGGAGAAGCGGCCTATTTTCCCGGCATTAATGGAATTACTGCTTCAGGACGCAGCGGAAAAAATCACCGCTCTCGGCGAACAAATTGTGATTCGCAATCTTTATCTTGAGCGGCGGATGGTGCCGCTAAATATCAGGCTGGATAAAGTGGAAG‑GTTCGCAGATGGGTGACGCCATTgacacatacggtaccgcc > 2:274409/1‑234 (MQ=255) gagCACGATCGCGTGGGCCGAATGGCGGACACCCAGGAGTTTGAAAACTTTGTGCTGGAGAAGCGGCATATTTTCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCGGATGGTGCCGCTCAATATCTGGCTGGAACAAGTGGAGG‑GTCAGCAGTTGCGCGACGCCCTTGAAGAATACGGTAACGCTAt > 1:492082/1‑251 (MQ=255) cgggggtctaaTGGCGGACACCCAGGATTTGGAAAACTTTGTGCTGGAGAAGCGGCATATTTGCCCGGCATTAACCGCATTGCTGCTTCAGGAAGCATCGGAAAAAATCACCGATCACGGCGAACAAATTGTGATGCGCCGTCTTGATATTGAGCGGCGGATGGTGCCGCTCAATATCTTGCTGGAATAAGTGGTAGTGT‑AGCAGTTGCGAGACGCCATTGAAGAATTCGTTAACGCTATTCGCCTGCTTg < 2:553442/242‑1 (MQ=255) tgacGGACACCCAGGAGTTTGAAAACTTTGTGCTGGAGATGCGGCATATTTTCCCGGCATTAATGGACTTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGCGCGGCGGCAGGTGCCGCTTATTATCTAGCTGGACCCAGTGGTAG‑GACTGCCTATGCGCGCCGCCATTGAGAAATACGGTAACGCGATTCTCCAgtgttccacggctacc > 2:164045/4‑236 (MQ=255) gCGGACACCCAGGAGTTTGAAAACTTTGTGCTGGAGAAGCGGCAGATTTTCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCGGATGGTGCCGCTCAATATCTGGCTGGAACAAGTGGAAG‑GTCAGCAGTTGCGCGACGCCATTGAAGAATACGGTAACGCTATTCGCCAGCTTGCCGCTGCTAACAt < 2:216577/251‑1 (MQ=255) aGGAGTTTGAAAACTTTGTGCTGGAGAAGCGGCATATTTTCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCGGATGGTGCCGCTCAATATCTGGCTGGAACAAGTGGAAG‑GTCAGCAGTTGCGCGACGCCATTGAAGAATACGGTAACGCTATTCGCCAGCTTGCCGCTGCTAACATTTTCCCTGGc < 1:520021/251‑1 (MQ=255) ttGAAAACTTTGTGCTGGAGAAGCGGCATATTTTCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCGGATGGTGCCGCTCAATATCTGGCTGGAACAAGTGGAAG‑GTCAGCAGTTGCGCGACGCCATTGAAGAATACGGTAACGCTATTCGCCAGCTTGCCGCTGCTAACATTTTCCCTGGCGACAt < 1:542391/250‑1 (MQ=255) aaatgtttGTGCTGGAGAAGCGGCCTATTGTCCCGGTATTAATGGAATTACTGCTTCAGGAAGCCGCGGAAAAAATCACCGATGTAGGCGAACAAATGGTGAGTCGCCATCTTTATATTTAGCGGCGGATGGTTCCGCTCAATATCTGGCTGGAACAAGTGGAAG‑GTCAGCAGTTGCGCGTCGCCATTGAAGAATACGGTAACGCTATTCGCCAGCTTGCCGCTGCTATCATTTTCCCTGTCGACATGCTg < 2:538022/246‑1 (MQ=255) gCTGGAGAAGCGGCATATTTTCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCGGATGGTGCCGCTCAATATCTGGCTGGAACAAGAGGAAG‑GGCAGCAGTTGCGCGACGCCATTGAAGAATACGGTAACGCTATTCGCCAGCTGGCCGCTGCTAACATTTTCCCTGGCGACATGCTT‑TTTAAAAACt > 2:172052/1‑251 (MQ=255) gagaAGCGGCATATTTTCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAACATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCGGATGGTGCCGCTCAATATCTGGCTGGAACAAGTGGAAG‑GTCAGCAGTTGCGCGACGCCATTGAAGAATACGGTAACGCTATTCGCCAGCTTGCCGCTGCTAACATTTTCCCTGGCGACCTGCTG‑TTTAAAAACTTCgg > 1:324465/1‑251 (MQ=255) cATATTTTCTCGGAATTAATGGAATTAATGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCGGATGGTGCCGCTCAATTTCTGGCTGGAACAAGTGGAAG‑GTCAGCAGTTGCGCGACGCCATTGAAGAATACGGTAACGCTATTCGCCAGATAGCCGCTGCTAACATTTTCCATGGCGAAATGCTGATTTACAAA‑TTCGGTGTCAACCg > 2:293330/1‑251 (MQ=255) | CTACAGGGCTGTAATGAGCAGTTCATTGAAGCGCCGGGTATTCGTGGAATGGTGATGTTGGTGTTTACGCTGCCGGGCTTTGATCGGGTATTCAAAGTCATCAAAGACAGGTTCGCGCCGCAGAAAGAGATGTCTGCCGCTCACGTTCGTGCCTGCTATCAACTGGTGAAAGAGCACGATCGCGTGGGCCGAATGGCGGACACCCAGGAGTTTGAAAACTTTGTGCTGGAGAAGCGGCATATTTCCCCGGCATTAATGGAATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCGGATGGTGCCGCTCAATATCTGGCTGGAACAAGTGGAAG‑GTCAGCAGTTGCGCGACGCCATTGAAGAATACGGTAACGCTATTCGCCAGCTTGCCGCTGCTAACATTTTCCCTGGCGACATGCTG‑TTTAAAAACTTCGGTGTCACCCG > NC_000913/4219508‑4219995 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |