| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,803,945 | C→T | G65S (GGT→AGT) | waaB ← | UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑1, 6‑D‑galactosyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,803,945 | 0 | C | T | 93.1% | 88.3 / NA | 29 | G65S (GGT→AGT) | waaB | UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑1, 6‑D‑galactosyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (11/16); minor base G (0/2); total (11/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.12e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 | |||||||||||
ATCATTTGCTGTTTAATGCCAGAGCTGATTGCTAAATGATAGTCGGCACAGGTGATATATTCAGCATGTTTTTTGTGATCTAAAGAAAAATGTGGCCATGAAAATACTGGCATATCAATTCCTGATTTTTTACGTGCTTTTGCGGCAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACCTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACATCACGGATGACAGTTTCCATGCCGCCAAATCCAGAAACAGCTTCGCCGATAAACGCTATTTTCATAGAAACTCTCATTAATTGAGTAAAACTCACT > NC_000913/3803698‑3804168 | aTCATTTGCTGTTTAATGCCAGAGCTGATTGCTAAATGATAGTCGGCACAGGTGATATATTCAGCATGTTTTTTGTGATCTAAAGAAAAATGTGGCCATGAAAATACTGGCATATCAATTCCTGATTTTTTACGTGCTTTTGCGGCAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTaa < 1:311251/251‑1 (MQ=255) tAAATGATAGTCGGCACAGGTGATATATTCAGCATGTTTTTTGTGCTCTAAAGAAAAATGAGGCCATGAAAAAACTGGCATATCAATTCCTGATTTTTTACGTGCTTTTGCGGCAAACAGGCAGGAGATCACATCACTACAAATAACGATATCTGGATGGTACTCCTGAAGCCATTTACTAAGAGCATGAATATGTTTCGCCCGACGCAAAAAAATTAAACGAATATTGGAAAATGAACATAAGTCTTTa > 2:310484/1‑250 (MQ=255) aGTCGGCACAGGTGATATATTCAGCATGTTTTTTGTGATCTAAAGAAAAATGTGGCCATGAAAATACTGGCATATCAATTCCTGATTTTTTACGTGCTTTTGCGGCAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTcc < 1:89212/251‑1 (MQ=255) tgttatagtatcgtcattttttttttGATCTAAAGAAAAATGTGGCCATGAAAATACTGGCATATCAATTCCTGATTTTTTACGTGCTTTTGCTGCAAACAGTCAGGAGATCTCATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATTTTTCGCCCGACGCAAAAAACTTAAACTAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATctc < 2:535956/232‑3 (MQ=255) tatataaTCAACATGTATTTTGTGATCTAAATAAAAATGTGGTCTTAAAAATACTGGAATATCAATCACTTATTTTTTACGTGCTTTTGCGGCAAACAGGCAGGAGACCACATAAATACAAATAACGATATCTGGTTGGTATGCCTTAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCTACGCAAAAAACGTAAACGAATATTGGAAAAGGAACATGAGTATTTAATCCCTTCCAGCCATCCCTTa < 2:150934/249‑1 (MQ=255) gtgATCTAAAGAAAAATGGGGCCATGAAAATACTGGCATATCAATTCCTGATTTTTTACGTGCTTTTGCGGCAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACaaa < 2:88513/251‑1 (MQ=255) tAAAGAAAAATGTGGCCATGAAAATACTGGAATATCAATTCCTGATTTTTTACGTGATTTTGAGGCAAACAGGCAGGAGATCACATCAATACAAAAAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGACTGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGATTATTTAATAACTTCCAGCCTTCCCTTATCCATTTTGtatttacgccaacataac > 2:396519/1‑233 (MQ=255) aaaTGTGGCCATGAAAATACTGGCATATCAATTCCTGATTTTTTACGTGCTTTTGCGGCAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTc < 1:419241/251‑1 (MQ=255) gcaaaTACTGGCATATCAATTCCTGATTTTTTACGTGCTTTTGCGGCAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGGAAATGAACATGAGTATTTCATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGatatt > 1:397863/3‑250 (MQ=255) aTTCCTGATTTTTTACGTGCTTTTGCGGCAAACAGGCAGGAGATCACATCAATACTAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACttt > 2:68254/1‑226 (MQ=255) aTTCCTGATTTTTTACGTGCTTTTGCGGCAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACttt < 1:68254/226‑1 (MQ=255) ttttttACGTGCTTTTGCGGCAAACAGGCAGGGAAACACATCAATACAAATAACGATATCGGGTTGGTACCCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCTACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACa < 2:60896/250‑1 (MQ=255) tACGTGCTTTTGCGGCAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACATCACg < 1:248483/250‑1 (MQ=255) cGTGCTTTTGCGGCAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCAtttt < 1:450866/179‑1 (MQ=255) cGTGCTTTTGCGGCAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCAtttt > 2:450866/1‑179 (MQ=255) cTTTTGCGGCAAACAGGCAGTAGCGCACATCAATACAAATAACGAGTGCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGTCGCAAAAAACGTAAACGAATATTGGAAAATGAACATGATTATTTAATACCTTCCAGCCTTCCCTTATCCAATTTGTCATTACGACAAAAGAAATACATTTCACTTTGGat < 2:22503/211‑1 (MQ=255) cTTTTGCGGCAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGat > 1:22503/1‑211 (MQ=255) gCGGCAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATTAATATTTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACATCACGGATGACAGttt < 1:396519/250‑1 (MQ=255) gggCAAACAGGCAGGAGATCACAGAAATACAAATAACTATATCTGGTTGGTACACCTGAATCCTTTTACTTAAAGAATGAATATGTTTGGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTGAATACCTTCCATCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTGTGGATATGTTGTTGCCTGAAGGTAGTAATAACATCACGGATGACAGTTTcc < 2:45859/250‑1 (MQ=255) cGGCAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTTAAGCCATTTTCTTAGAGCATGAATATGTGTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATTAGTATTTAATACCTTCCATCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACATCACGGATGACAGTTTcc < 1:519513/251‑1 (MQ=255) cGGCAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACATCACGGATGACAGTTTcc < 1:558636/251‑1 (MQ=255) cAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACATCACGGATGACAGTTTCCATg > 1:100651/1‑251 (MQ=255) gcaggAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTGGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACAACACGGATGACAGTTTCCATGCCGCCa > 1:157685/1‑250 (MQ=255) ggAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACATCACGGATGACAGTTTCCATGCCGCCa > 1:417500/1‑247 (MQ=255) ggAGAACACATCAATACAAATAACGATATCTGGTTGGTACCTCTGAAGTCATTAACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAAGGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACATCACGGATGACAGTTTCCATGCCGCCa < 2:417500/247‑1 (MQ=255) aTACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACATCACGGATGACAGTTTCCATGCCTCCAAATCCAGAAACAGCTTc > 1:237074/1‑251 (MQ=255) gAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACATCACGGATGACAGTTTCCATGCCGCCAAATCCAGAAACAGCTTCGCCGATAAACGCTATTTTCATAGAAACTCTCATTAATTGAGTAAAACTCACt < 1:302514/251‑1 (MQ=255) gCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACATCACGGATGACAGTTTCCATgc > 1:362056/1‑159 (MQ=255) gCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTGGGATATGTTGTTGCCTGAAGGTAGTAATAACATCACGGATGACAGTTGCCATgc < 2:362056/159‑1 (MQ=255) | ATCATTTGCTGTTTAATGCCAGAGCTGATTGCTAAATGATAGTCGGCACAGGTGATATATTCAGCATGTTTTTTGTGATCTAAAGAAAAATGTGGCCATGAAAATACTGGCATATCAATTCCTGATTTTTTACGTGCTTTTGCGGCAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACCTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACATCACGGATGACAGTTTCCATGCCGCCAAATCCAGAAACAGCTTCGCCGATAAACGCTATTTTCATAGAAACTCTCATTAATTGAGTAAAACTCACT > NC_000913/3803698‑3804168 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |