| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,084,330 | C→T | A42T (GCA→ACA) | tsuB ← | putative thiosulfate sulfurtransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,084,330 | 0 | C | T | 87.9% | 70.6 / 5.1 | 33 | A42T (GCA→ACA) | tsuB | putative thiosulfate sulfurtransferase |
| Reads supporting (aligned to +/- strand): ref base C (1/3); new base T (15/14); total (16/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.01e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.52e-01 | |||||||||||
AGATGCTGGTACAACAATATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATTGTCTAATTTG‑AAGCCTCCGCCGCTGGTACGGCGGAGGACAATGTTGAGTCAGGCTTTTTGAAC‑GGTGATGCTCCACGCTGCATCGCCAATCTGCTGATAATCGGTGATGGCATGTCCTTCTTCTGCCGCCCACTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCTGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTTAATTTGCCGCAGCAGTTGCCAGTCGCGCCTTACGCTGCGGTCGAACATACACAAGCCAGGACGCAGTCCAGACTCCGAGAATCATAAATACAAGGCCA > NC_000913/2084098‑2084566 | aaaTGCTGGTACAACAATATGCCGATGACAAAGAGAAAGAGGCGCTGTTAAAAGCACTTTGGCAGTACGAGGAAGAGATTGTCTAATTTG‑AAGCCTCCGACGCTGGTACGGCGGAAGACCATGTTTAGTCCGGGTTTTT‑AGCAGAGGATGCTCCACAGTGCATCTCCAATCTGCTGATACTCGGAGATGGCCAGTCCTTCTTCTGCCCCACACCGTGGGATTGCTTCATTTTTCTGGGTGCatatacaccc > 2:565296/3‑242 (MQ=255) gttGGTACAACAATATGCCGTGGATAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTTCGCGGAAGAGTTTGTGTA‑TTTGTAAGCCGCCGCCGCTGGTACGGCGGAGGACAATGTTGAGTCAGGCTTTTTGAAC‑GGTTATGCTCCACGCTGCATCGCCAATCTGCTGATAATCGGTGATGGCATGTCCTTCTTCTGCCGCCCACTGTGGGATTGCTTCAGTTGTCTGGGTGCAATCAAACTCAATc < 2:135107/249‑1 (MQ=255) ggTACAACAATAGGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATTGTCTAATTTG‑AAGCCTCCGCCGCTGGTACGGCGGAGGACAATGTTGAGTCAGGCTTTTTGAAC‑GGTGATGCTCCACGCTGCATCGCCAATCTGCTGATAATCGGTGATGGCATGTCCTTCTTCTGCCGCCCACTGTGGGATTGCTTCAGTTGTCTGGGTGCAATCAAACTCAATc < 2:265544/248‑1 (MQ=255) gtatcacaaTAGGCCGAGGACAAAGAGAAAGGGGTGCTGGTAAAAGCACCTTGGCAGCACGTGGAAGGGATTGTCTAATTTG‑AAGCCTCGTCCGCTGGTGCTGCGGAGGACTATGGTAAGGCTGGCTTTTTGAAC‑GGGGATGCTCCACGCTGCATCGTCAATCGGCTGATAAGCGGTGATGGCATGTCCTTCTTCTGCCGCCCACTGAGGGATTGCTGCAGGTGTCTGGGGTCAATCTAACTCAATCACTa < 2:318852/246‑1 (MQ=255) tatGCCGATGACAAAGAGAAAGTGGCACTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATTGTCTAATTTG‑AAGCCTCCGCCGCTGGTACGGCGGAGGACAATGTTGAGTCAGGCTTTTTGAAA‑GGTGATGCTCCACGCTGCATCGCCAATCTGCTGATAATCGGTGATGGCATGTCCTTCTTCTGCCGCCCACTGTGGGATTGCTTCAATTGTCTGGGTGCAATCAAACTCAATCACTAACTCATcgc > 1:509350/1‑251 (MQ=255) gACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATTGTCTAATTTG‑AAGCCTCCGCCGCTGGTACGGCGGAGGACAATGTTGAGTCAGGCTTTTTGAAC‑GGTGATGCTCCACGCTGCATCGCCAATCTGCTGATAATCGGTGATGGCATGTCCTTCTTCTGCCGCCCACTGTGGGATTGCTTCAGTTGTCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGAcc > 1:442503/1‑250 (MQ=255) aaaGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATTGTCTAATTTG‑AAGCCTCCGCCGCTGGTACGGCGGAGGACAATGTTGAGTCAGGCTTTTTGAAC‑GGTGATGCTCCACGCTGCATCGCCAATCTGCTGATAATCGGTGATGGCATGTCCTTCTTCTGCCGCCCACTGTGGGATTGCTTCAGTTGTCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTgac > 1:377595/1‑248 (MQ=255) tAAAAGCACTTTGGCAGTACGCGGAAGAGATTGTCTAATTTG‑AAGCCTCCGCCGCTGGTACGGCGGAGGACAATGTTGAGTCAGGCTTTTTGAAC‑GGTGATGCTCCACGCTGCATCGCCAATCTGCAGATAATCGGTGATGGCATGTCCTTCTTCTGCCGCCCACTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCTGCTTTTg < 1:83320/250‑1 (MQ=255) cTTTGGCAGTACGCGGACGAGATTGTCTAATTTG‑AAGCCTCCGCCGCTGGTACGGCGGAGGACAATGTTGAGTCAGGCTTTTTGGAC‑GGTGATGCTCCCCGCTGCATCGCCAATCTGCTGATAATCGGTGATGGCATGTCCTTCTTCTGCCGCCCACTGTGGGGTTGCTTTAGGTGTCTGGGTGCAAt > 2:542314/1‑188 (MQ=255) cTTTGGCAGTACGCGGAAGAGATTGTCTAATTTG‑AAGCCTCCGCCGCTGGTACGGCGGAGGACAATGTTGAGTCAGGCTTTTTGAAC‑GGTGATGCTCCACGCTGCATCGCCAATCTGCTGATAATCGGTGATGGCATGTCCTTCTTCTGCCGCCCACTGTGGGATTGCTTCAGTTGTCTGGGTGCAAt < 1:542314/188‑1 (MQ=255) gTACGCGGAAGAGATTGTCTAATTTG‑AAGCCTCCGCCGCTGGTACGGCGGAGGACACTGTTGAGTCAGGCTTTTTGAAC‑GGTGATGCTCCACGCTGCATCGCCAATCTGCTGCTAATCGGTGATGGCATGTCCTTCTTCTGCCGCCCACTGTGGGATTGCTTCAGTTGTCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCTGCTTTTGCTTCTATGAGTGGAAAc > 2:71897/1‑251 (MQ=255) gtggaatagttttccTAATTGG‑CAGCCTCCGCCTCTGTTACGGCGGAGGACAATGTTGAGTCAGGCTTTTTGAAC‑GGTGATGCTCCACGCGGCATCGCCAAGCTGCTGATAATCGGTGATGGCATGTCCTTCTTCTGCCGCCCACTGTGGTATTGCTTCAGTTGTCTGGGTGCAATCAAACTCAATCACGAACTCATCGCCGCTGGCCAGTTCTGCCAGAGCTGTTTTTGCTTCTATGAGTGGGAACGGAc < 2:372171/237‑1 (MQ=255) ggggagagATGGACTAATTTG‑ATGCCGCCGCCGCGGGGACGGCGGAGGACAATGTTGAGTCAGGCTTGTTGAAC‑GGTGATGCTCCACGCTGCATCGCCAATCTGCTGATAATCGGTGATGGCATGTCCTTCTTCTGCCGCCCACTGTGGGATTGCTTCAGTTGTCTGGGTGCAATCAACCTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCTGCTTTTGCTTCTATGAGTGGAAACGGACa < 2:182569/247‑1 (MQ=255) ggAATAGATTGTCTAATTTG‑AAGCCTCCGCCGCTGGTACGGCGGGGGACAATGTTGAATCAGGCTTTTTGAAC‑GGTGATTCTCCCCGCGGCATCGCCACTCTGCTGATAATCGGTGATGGCATGTCCTTCTTCTGCCGCCCACTGTGGGATTGCTTCAGTTGTCTGGTTGCAATCCAACTCCATCACTCACTCATCTCCCCTGACCATTTCTTCCACAGCGGCTTTTGCTTCTATGAGTGGCACCGGACa > 2:3835/1‑250 (MQ=255) tAATTTG‑AAGCCTCCGCCGCTGGTACGGCGGAGGACAATGTTGAGTCAGGCTTTTTGAAC‑GGTGATGCTCCACGCTGCATCGCCAATCTGCTGATAATCGGTGATGGCATGTCCTTCTTCTGCCGCCCACTGTGGGATTGCTTCAGTTGTCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCTGCTTTTGCTTCTATGAGTGGAAACGGACAGGCCTGCGTcacc < 2:54397/250‑1 (MQ=255) tG‑AAGCCTCCGCCGCTGGTACGGCGGAGGACAATGTTGAGTCAGGCTTTTTGAAC‑GGTGATGCTCCACGCTGCATCGCCAATCTGCTGATAATCGGTGATGGCATGTCCTTCTTCTGCCGCCCACTGTGGGATTGCTTCAGTTGTCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCTGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATc < 1:434240/250‑1 (MQ=255) gccgcTGGTACGGCGGAGGACAATGTTGAGTCAGGCTTTTTGAAC‑GGTGATGCTCCACGCTGCATCGCCAATCTGCTGATAATCGGTGATGGCATGTCCTTCTTCTGCCGCCCACTGTGGGATTGCTTCAGTTGTCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCTGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTa > 1:157523/1‑250 (MQ=255) gTACGGCGGAGGACAATGTTGAGTCAGGCTTTTTGAAC‑GGTGATGCTCCACGCTGCATCGCCAATCTGCTGATAATCGGTGATGGCATGTCCTTCTTCTGCCGCCCACTGTGGGATTGCTTCAGTTGTCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCTGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCAt < 1:541328/251‑1 (MQ=255) ggcggAGGACAATGTTGAGTCAGGCTTTTTGAAC‑GGTGATGCTCCACGCTGCATCGCCAATCTGCTGATAATCGGTGATGGCATGTCCTTCTTCTGCCGCCCACTGTGGGATTGCTTCAGTTGTCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCTGCTTTTCCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCttt < 1:393062/251‑1 (MQ=255) aggaCAATGTTGAGTCAGGCTTTTTGAAC‑GGTGATGCTCCACGCTGCATCGCCAATCTGCTGATAATCGGTGATGGCATGTCCTTCTTCTGCCGCCCACTGTGGGATTGCTTCAGTTGTCTGGGTGCAATCAAACTCAATCACTAACTCATcgcc < 1:49846/155‑1 (MQ=255) aggaCAATGTTGAGTCAGGCTTTTTGAAC‑GGTGATGCTCCACGCTGCATCGCCAATCTGCTGATAATCGGTGATGGCATGTCCTTCTTCTGCCGCCCACTGTGGGATTGCTTCAGTTGTCTGGGTGCAATCAAACTCAATCACTAACTCATcgcc > 2:49846/1‑155 (MQ=255) aTGTTGAGTCAGGCTTTTTGAAC‑GGTGATGCTCCACGCTGCATCGCCAATCTGCTGATAATCGGTGATGGCATGTCCTTCTTCTGCCGCCCACTGTGGGATTGCTTCAGTTGTCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCTGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCAACTTTACACcttactt < 1:427212/251‑1 (MQ=255) tGTTGAGTCAGGCTTTTTGAAC‑GGTGATGCTCCACGCTGCATCGCCAATCTGCTGATAATCGGTGATGGCATGTCCTTCTTCTGCCGCCCACTGTGGGATTGCTTCAGTTGTCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCTGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACcttactt > 1:443188/1‑250 (MQ=255) gAGTCAGGCTTTTTGAAC‑GGTGATGCTCCACGCTGCATCGCCAATCTGCTGATAATCGGTGATGGCATGTCCTTCTTCTGCCGCCCACTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCTGCTTTCGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTTAAtt < 1:135183/250‑1 (MQ=255) ggTGATGCTCCACGCTGCATCGCCAATCTGCTGATAATCGGTTATGGCATGTCCTTCTTCTGCCGCCCACTGTGGGATTGCTTCAGTTGTCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCTGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAGTCACCa < 2:76805/212‑1 (MQ=255) ggTGATGCTCCACGCTGCATCGCCAATCTGCTGATAATCGGTGATGGCATGTCCTTCTTCTGCCGCCCACTGTGGGATTGCTTCAGTTGTCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCTGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCa > 1:76805/1‑212 (MQ=255) gATGGCATGTCCTTCTTCTGCCGCCCACTGTGGGATTGCTTCAGTTGTCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCTGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTTAATTTGCCGCAGCAGTTGCCAGTCGCGCCTTACGCTGCGGTCGAACATACACAAGCCAGGACGc > 1:429233/1‑250 (MQ=255) gATGGCATGTCCTTCTTCTGCCGCCCACTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCTGCTTTTGCTTCTa < 2:290679/119‑1 (MQ=255) gATGGCATGTCCTTCTTCTGCCGCCCACTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCTGCTTTTGCTTCTa > 1:290679/1‑119 (MQ=255) cccACTGTGGGATTGCTTCAGTTGTCTGGGAGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCTGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTTCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTTAATTTGCCGCAGCAGTTGCCAGTCGCGCCTTACGCTGCGGTCGAACATACACAAGCCAGGACGCAGTCCAGACTCCGAGAATCATaa > 1:438163/1‑250 (MQ=255) aCTGTGGGATTGCTTCAGTTGTCTGGGCGCAATCAAACTCAATCACTAACTCAACGCCGCTGACCATTTCTGCCAGAGCTGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACGCCTTACTTAATTTGCCGCAGCAGTTGCCAGTCGCGCCTTACGCTGCGGTCGAACATACACAAGCCAGGACGCAGTCCAGACTCCGAGAATCATAAATAc < 2:379750/251‑1 (MQ=255) tgGGATTGCTTCAGTTGTCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCTGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTTAATTTGCCGCAGCAGTTGCCAGTCGCGCCTTACGCTGCGGTCGAACATACACAAGCCAGGACGCAGTCCAGACTCCGAGAATCATAAATACAAgg > 1:150038/1‑251 (MQ=255) aTTGCTTCAGTTGTCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATCTCTGCCAGAGCTGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTTAATTTGCCGCAGCAGTTGCCAGTCGCGCCTTACGCTGCGGTCGAACATACACAAACCAGGACGCAGTCCAGACTCAGCGAATCATACATACAAGGCCa > 2:148545/1‑250 (MQ=255) | AGATGCTGGTACAACAATATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATTGTCTAATTTG‑AAGCCTCCGCCGCTGGTACGGCGGAGGACAATGTTGAGTCAGGCTTTTTGAAC‑GGTGATGCTCCACGCTGCATCGCCAATCTGCTGATAATCGGTGATGGCATGTCCTTCTTCTGCCGCCCACTGTGGGATTGCTTCAGTTGCCTGGGTGCAATCAAACTCAATCACTAACTCATCGCCGCTGACCATTTCTGCCAGAGCTGCTTTTGCTTCTATGAGTGGAAACGGACAGACCTGCGTCACCACATCCAGCTTTTTAATCACCATCTTTACACCTTACTTAATTTGCCGCAGCAGTTGCCAGTCGCGCCTTACGCTGCGGTCGAACATACACAAGCCAGGACGCAGTCCAGACTCCGAGAATCATAAATACAAGGCCA > NC_000913/2084098‑2084566 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |