| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 466,148 | G→A | P389S (CCA→TCA) | ybaE ← | uncharacterized protein YbaE |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 466,148 | 0 | G | A | 97.1% | 104.1 / NA | 35 | P389S (CCA→TCA) | ybaE | uncharacterized protein YbaE |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (14/20); total (15/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.29e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATTCCGGTGCTTCGCCAATTAATCTGTCGCCCATCATGAGGTCTGCGTGTGCCTGTAGGGTCGTGTCGTCCC‑AGTTTTTTGCGTTATGAAAAATAATTGTGAGTTCACAGCCTTCCGCTGCCAGTGTCGCCTGTAGGCGTTCTGCCATGGTATGAAGTTCTATCGGT‑AGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGGCAGTAATGCATGACTGGCGGTG‑ATCAGG‑TTTTCTCCGACTTCTAACGTTTGTAATAA‑ACCGGATTGATGAATAATGGAGATCACTTTTCGCGCCTGCCAGAGGGAGAGTCGGGGACTTTTGCGCAACGTCA‑AATAG‑CAAAAACCTAAACTGATGCCGCTACTGACCTGGCTGACCCGTTGCAGCTCCTCCGGTTTGCCGATGGTGATTTGCACGGGATGCCGACAACTGGTTCCCAAATCTTT > NC_000913/465905‑466391 | atTCCGGTGCTTCGCCAATTAATCTGTCGCCCATCATGAGGTCTGCGTGTGCCTGTAGGGTCGTGTCGTCCC‑AGTTTTTTGCGTTATGAAAAATAATTGTGAGTTCACAGCCTTCCGCTGCCAGTGTCGCCTGTAGGCGTTCTGCCATGGTATGAAGTTCTATCGGT‑AGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAAt > 1:399309/1‑251 (MQ=255) attaatctcgtgccaactaggAGGTCTGCGTGTGTCTGTTGGGTCGTGTC‑TCCCTGGTTTTTTTCGGTATGAAAAATAATTGTGGGTTCCCAGCCTCCTGCTGCCATTGGCGCCTGTAGGCGTTCTGCCATGGTATGAATTTCTATCGGT‑AGGTGTTAACCCAGCGTCAAGTTTTTCGGTAGTTTTACCTTATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTG‑At < 2:184612/231‑1 (MQ=255) aaTCTGTCGCCCATCAGGAGGTTTGCGTGTGCCTGTAGGGTCGTGTCGTCCC‑AGTTTTTTGCGTTATGAAAAATAATTGTGAGTTCACAGCCTTCCGCTGCCAGTGTCGCCTGTAGGCGTTCTGCCATGGTATGAAGTTCTATCGGT‑AGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTG‑ATCa < 2:60190/250‑1 (MQ=255) cGCCCATCATGAGGTCTGCGTGTGCCTGTAGGGTCGTGTCGTCCC‑AGTTTTTTGCTTTATGAAAAATAATTGTGAGTTCACAGCCTTCCGCTGCCAGTGTCGCCTGTAGGCGTTCTGCCATGGTATGAAGTTCTATCGGT‑AGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTGCCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTG‑ATCAGG‑TTTtc < 1:412345/250‑1 (MQ=255) gCCCATCATGAGGTCTGCGTGTGCCTGTAGGGTCGTGTCGTCCC‑AGTTTTTTGCGTTATGAAAAATAATTGTGAGTTCACAGCCTTCCGCTGCCAGTGTCGCCTGTAGGCGTTCTGCCATGGTATGAAGTTCTATCGGT‑AGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTG‑ATCAGG‑TTTtctc > 1:75391/1‑251 (MQ=255) cccATCATGAGGTCTGCGTGTGCCTGTGGGGTCGTGTCGTCCC‑AGTTTTTTGCGTTATGAAAAATAATTGTGAGTTCACAGCCTTCCGCTGCCAGTGTCGCCTGTAGGCGTTCTGCAATGGTATGAAGTTCTATCGGT‑AGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTCCCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTG‑ATCAGG‑TTTTCTcc < 2:279355/251‑1 (MQ=255) ccATCATGAGGTCTGCGTGTGCCTGTAGGGTCGTGTCGTCCC‑AGTTTTTTGCGTTATGAAAAATAATTGTGAGTTCACAGCCTTCCGCTGCCAGTGTCGCCTGTAGGCGTTCTGCCATGGTATGAAGTTCTATCGGT‑AGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTG‑GTCAGG‑GTTTCTccc > 1:514234/1‑250 (MQ=255) gTCTGCGTGTGCCTGTAGGGTCGTGTCGTCCC‑AGTTTTTTGCGTTATGAAAAATAATTGTGAGTTCACAGCCTTCCGCTGCCAGTGTCGCCTGTAGGCGTTCTGCCATGGTATGAAGTTCTATCGGT‑AGGTGATAAACCAACGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTG‑ATCAGG‑GTTTCTCCGACTTCTAACg > 1:369276/1‑251 (MQ=255) cGTGTGCCTGTAGGGTCGTGTCGTCCC‑AGTTTTTTGCGTTATGAAAAATAATTGTGAGTTCACAGCCTTCCGCTGCCAGTGTCGCCTGTAGGCGTTCTGCCCTGGTATGAAGTTCTATCGGT‑AGGGGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCACTGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGAG‑ATCAGG‑TTTTTTCAGACTTCTAACGGTTGt > 2:385999/1‑251 (MQ=255) gggTCGTGTAGTCCC‑AGTTTTTTGCGTTATGAAAAATAATTGTGAGTTCACAGCCTTCCGCTGCCAGTGTCGCCTGTAGGCGTTCTGCCATGGTATGAAGTTCTATCGGT‑AGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAGTAGTCCAGCCTGACAGTAATGCATGACTGGAGGGT‑ATCAGA‑CTTTCTCCGCCTTTTAACCATTGTAATAA‑ACCgggt > 2:562919/1‑249 (MQ=255) ggTCGTGTCGCCCT‑ATTTTTTTGCGTTATGAAAAATATTTGGGAGTTCTCATCCTTACGTGGTCATTGTCGCCTGTAGGCGTTTGGCCATGTTTTGAAGTTCTATCGGT‑AGGTGATAAACCAGCGTCAAGGTTTTCGGTATTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTG‑AACATG‑TTTTCGCCGACTTCTAACGTTTGTAATAA‑ACCGGAtt < 2:365090/251‑1 (MQ=255) cctggtttttGCGTTATTAAAAATAATTGTTAGTTCACAGCCTACCACTGCATGTGTCGCGTGTAGGCGATCTGCCATGGTAGTAATGTCAATCGGT‑AGGAGATAAACTAACTTCAAGGTGTTCGTTAGTTTGACTTCATCCGGTTCCTGCCAATGCTGAATAGTCCAGCCTTACAGTAATGCATGACTGTCGGTG‑ATCAGG‑TTTTCTCCGAATTCTAACGTTTGTAATAA‑ACCGGATTGATGAATAATgg < 1:540186/246‑1 (MQ=255) catttttttttggtATGAAAAATAATTGGTAGTTCCAAGCCTTCCGCTGCCAGTTTCGCCTGTAGGCGTTCTGCCAGTGTATGAAGTTCTTTCGGT‑AGGGGATAAACCAGCGTCAAGGTTTTCGGTATTTTGATTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTG‑ATCAGG‑TTTTCTCCGACTTCTAACGTTTGTAATAA‑ACCGGATTGATGAATAATGga < 2:399309/238‑1 (MQ=255) ttttttGCGTTATGAAAAATAATTGTGAGTTCACAGCCTTCCGCTGCCAGTGTCGCCTGTAGGCGTTCTGCCATGGTATGAAGTTCTATCGGT‑AGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTG‑ATCAGG‑TTTTCTCCGACTTCTAACGTTTGTAATAA‑ACCGGATTGATGAATAATgggaat > 1:385413/1‑247 (MQ=255) tgtgtgttttgaaaaagaatttggcgTTCACCGCCGTCCGCTGCCAGTGTCGCCTGTAGGCGTTCTGCAATGGTATGAAGTGCTATCGGT‑AGGTGATAAACCAACGTCACGGTTTTCGGTAGTTTGACTTCTTCCTTTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTG‑ATCAGG‑TTTTCTCCGACTTCTAACGTTTGTAATTA‑ACTGGATTGATGAATAATGGAGATCa < 2:369276/225‑1 (MQ=255) gTTATGAGAAATAATTGTGAGTTCACAGCCTTCCGCTGCCAGTGTCGCCTGTAGGCGTTCTGCCATGGTATGAAGTTCTATCGGT‑AGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGGCAGTAATGCATGACTGGCGGGG‑GTCAGG‑GTTTCTACGCCTTCTAACGGTTGTAATAA‑ACCGGATTGTTGGATAATGGGGATCCCttttt > 2:29589/1‑250 (MQ=255) aataatTGTGAGTTCACAGCCTTCCGCTGCCAGTGTCGCCTGTAGGCGTTCTGCCATGGTATGAATTTCTATCGGT‑AGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTG‑ATCAGG‑TTTTCTCCGACTTCTAACGTTTGTAATAA‑ACCGGATTGATGAATAATGGAGATCACTTTTCGCGCCTGcc < 1:248378/251‑1 (MQ=255) ataatTGTGAGTTCACAGCCTTCCGCTGCCAGTGTCGCCTGTAGGCGTTCTGCCATGGTATGAAGTTCTATCGGT‑AGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTG‑ATCAGG‑TTTTCTCCGACTTCTAACGTTTGTAATAA‑ACCGGATTGATGAATAATGGAGATCACTTTTCGCGCCTGCCa < 1:5561/251‑1 (MQ=255) ataatTGTGAGTTCACAGCCTTCCGCTGCCAGTGTCGCCTGTAGGCGTTCTGCCATGGTATGAAGTTCTATCGGT‑AGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGAG‑ATCAGG‑TTTTCTCCCTCTTTTTACGTTTGTGATAA‑ACCAGGTTAATGAATAATGGAGCACACttttatcgacctccc > 2:124116/1‑240 (MQ=255) aGTTCACAGCCTTCCGCTGCCGGGTTCCCTTGTTGGGGTTCTTCCGTTGGATGAAGTTCTAT‑GGTGTGGTGTTAAACCACGGTCAAGGTTTTAGGTAGTTTGACTTCATCCGGTTCTTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTG‑ATCAGG‑TTTTCTCCGACTTCTAACGTTTGTAATAA‑ACCGGATTGATGAATAATGGAGATCACTTTTCGCGCCTGCCAGAGGGagag < 2:431221/251‑1 (MQ=255) tCACAGCCTTCCGCTGCCCGTGTAGCCTGTAGGCGTTCTGCCATGGTATGAAGTTCTATCGGT‑AGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTGGACCGGG‑TTTT‑TCCTCCTTCTCACGTGTTTTATAACACCG‑ATTTGTGAATAATTGAGATCACTTTTTGAGCCTGcccggggtagaggcg > 2:362161/1‑238 (MQ=255) aGCCTTCCGCTGCCAGTGTCGCCTGTAGGCGTTCTGCCATGGTATGAAGTTCTATCGGT‑AGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTG‑ATCAGG‑TTTTCTCCGACTTCTAACGTTTGTAATAA‑ACCGGATTGATGAATAATGGAGATCACTTTTCGCGCCTGCCAGAGGGAGAGTCGGGGa < 1:447472/251‑1 (MQ=255) cccTTCCGCGGCCAGTGCCGCCTGTAGGCGTTCTGCCATGGTATGAATTTCTAGCGGT‑AGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTCCCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTG‑ATCAGG‑TTTTCTCCGACTTCTAACGTTTGTAATAA‑ACCGGATTGATGAATAATGGAGATCACTTTTCGCGCCTGCCAGAGGGAGAGTCGGGGAc < 2:403633/250‑1 (MQ=255) gtCGCCTGTAGGCTTTCTGCCATGGTATGAAGTTCTATCGGT‑AGGTGAGAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAAGAGTCCAGCCTGACAGTAATGCATGACTGGCGGTG‑ATCAGG‑TTTTCTCCGACTTCTAACGTTTGTAATAA‑ACCGGATTGATGAATAATGGAGATCACTTTTCGCGCCTGCCAGAGGGAGAGTCGGGGACTTTTGCGCAACGTCa‑a < 1:123022/251‑1 (MQ=255) cATGGTATGAAGTTCTATCGGT‑AGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGGG‑ATCAGGGTTTTTACCG‑CTTCTAACGTTTGGTATAA‑ACCGGGTTGACGGATAATTGAGATCACTTTTCGCGCCTTGCAGACGGAGAAGCGGGGGCTTTTGGGCAACATCCCAATAA‑CAAAAACC‑AAACTgg > 2:70398/1‑250 (MQ=255) gctcgtccgtactgtatcgatgggggATAAACCAGCGTCAAGGTTTTCGGTAGTTTGATTGCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTG‑ATCAGG‑TTTTCGCCGACTTCTAACGTTTGGAATAA‑ACCGGATTGATGAATAATGGAGATCACTTTTCGCGCCTGCCAGAGGGAGAGGCGGGGACTTTTGCGCAACGTCA‑AATAG‑CAAAAACCTAAACTGAt < 2:281740/226‑1 (MQ=255) cTATCGGT‑AGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTG‑GTCAGG‑GTTTCTCCGACTTCTCACGTTTTTAATAA‑ACCGGATTGATGAATAATGGTGATCACTTTTCGCGCCTGCCAGAGGGAGAGTCGGGGGCTTTTTAGCCACGGCC‑AATAGGCAAAAAC‑TAAACTGaatagtcgggaaggg > 1:281740/1‑237 (MQ=255) aTCGGT‑AGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTG‑ATCAGG‑TTTTCTCCGACTTCTAACGTTTGTAATAA‑ACCGGATTGATGAATAATGGAGATCACTTTTCGCGCCTGCCAGAGGGAGAGGCGGGGACTTTTGCGCAACGTCA‑AATAG‑CAAAAACCTAAACTGATGCCGCTACTGAc < 1:169280/248‑1 (MQ=255) gTGATAACCCATCGTAAAGGTTGTCGTTAGTTGTACTGCATCCGGAACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTG‑ATCAGG‑TTTTCTCCGACTTCTAACGTTTGTAATAA‑ACCGGATTGATGAATAATGGAGATCACTTTTCGCGCCTGCCAGAGGGAGAGTCGGGGACTTTTGCGCAACGTCA‑AATAG‑CAAAAACCTAAACTGATGCCGCTACTGACCTGGCTGAccc < 2:514234/251‑1 (MQ=255) taaaaaCCAGTGCCAAGGTTTTGTGTAGTTGAACTTCACCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTG‑ATCAGG‑TTTTCTCCGACTTCTAACGTTTGTAATAA‑ACCGGATTGATGaata < 2:507730/143‑1 (MQ=255) gATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTG‑ATCAGG‑TTTTCTCCGACTTCTAACGTTTGTAATAA‑AACGGATTGATGaata > 1:507730/1‑146 (MQ=255) gTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTACCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTG‑TTCAGG‑TTTTCTCCGACTTCTAACGTTTGTAATAA‑ACCGGGTTGATGAATAATGGAGATCACTTTTCGCGCCTGCCAGAGGGAGAGTCGGGGACTTTTGCCCAACGGCA‑AATAA‑CAAAAACCTAAACTGATGCCGCTACTGACCCTGCTGACCCGTTGCAGcccccc > 1:474681/1‑246 (MQ=255) ttCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGACAGTAATGCATGACTGGCGGTG‑ATCAGG‑TTTTCTCCGACTTCTAACGTTTGTAATAA‑ACCGGATTGATGAATAATGGAGATCACTTTTCGCGCCTGCCAGAGGGAGAGTCGGGGACTTTTGCGCAACGTCA‑AATAG‑CAAAAACCTAAACTGATGCCGCTACTGACCTGGCTGACCCGTTGCAGCTCCTCCGGTTTGc < 1:29589/250‑1 (MQ=255) aaGTCCAGCTTGACAGTAATGCATGACTGGCGGTG‑AACAGG‑TTTGCCCCGACTTTTAACGTTTGTAATAA‑ACCGGATTGATGAAGAATGGAGAGCACGTTTCGCGCCTGCCAGAGGGAGAGGCGGGGACTTTTGCGCATCGTCA‑AATAG‑TAAAAACCTAAACTGATGCCGCTACTGACCTGGCTGTCCCGTTGCAGCTCCTCCGGTTTGCCGATGGTGATTTGCACGGGATGCCGACAACTGGTTCCCaaa < 2:463637/250‑1 (MQ=255) cAGCCTGACAGTAATGCATGACTGGCGGTG‑ATCAGG‑GTTTCTCCGACTTCTAACGTTTGTAATAA‑ACCGGATTGATGAATAATGGAGATCACTTTTCGCGCCTGCCAGAGGGAGAGTCGGGGACTTTTGCGCAACGTCA‑AATAG‑CAAAAACCTAAACTGGTGACGCTACTGACCTTGCTGCACCGTTTCACCTCCTCCGGTTTGCCGGCGGTGATTTGCACGGGAAGCCCGCAACAGGTTCCCCAAACttt > 1:412980/1‑251 (MQ=255) | ATTCCGGTGCTTCGCCAATTAATCTGTCGCCCATCATGAGGTCTGCGTGTGCCTGTAGGGTCGTGTCGTCCC‑AGTTTTTTGCGTTATGAAAAATAATTGTGAGTTCACAGCCTTCCGCTGCCAGTGTCGCCTGTAGGCGTTCTGCCATGGTATGAAGTTCTATCGGT‑AGGTGATAAACCAGCGTCAAGGTTTTCGGTAGTTTGACTTCATCCGGTACCTGCCAATGCGGAATAGTCCAGCCTGGCAGTAATGCATGACTGGCGGTG‑ATCAGG‑TTTTCTCCGACTTCTAACGTTTGTAATAA‑ACCGGATTGATGAATAATGGAGATCACTTTTCGCGCCTGCCAGAGGGAGAGTCGGGGACTTTTGCGCAACGTCA‑AATAG‑CAAAAACCTAAACTGATGCCGCTACTGACCTGGCTGACCCGTTGCAGCTCCTCCGGTTTGCCGATGGTGATTTGCACGGGATGCCGACAACTGGTTCCCAAATCTTT > NC_000913/465905‑466391 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |