| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,844,146 | C→T | A242A (GCG→GCA) | ynjI ← | DUF1266 domain‑containing protein YnjI |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,844,146 | 0 | C | T | 96.7% | 91.3 / ‑4.4 | 30 | A242A (GCG→GCA) | ynjI | DUF1266 domain‑containing protein YnjI |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (15/14); total (15/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.21e-01 | |||||||||||
TGTCGTAACGATAACACGCTTCAAGTTCAGCATCCGTTAACTTTCTGCGATAGCAGCAGATATGCCAGTAAAGAAATCCCATTTGACTATTTTTTTGATAATCTTCTTCGCTTTCGAACAACTCGTGCGCCTTTCG‑AGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGAAAAGCTGTGCTTGATATCGAGATCATCCATGATAATTCCGCCGCCCATATTAGCTTCGCCGAGGATTTACCGGAGCTATGATTAGCGCAATCAGAGATATAGTCTGAGGGAAAAACAGCAAATTTATTCAACAAGGCGATAACCTGCTCTGGGGCTTCCTCCATGTTTGCTTTAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAA > NC_000913/1843917‑1844370 | tGTCGTAACGATAACACGCTTCAAGTTCAGCATCCGTTAACTTTCTGCGATAGCAGCAGATATGCCAGTAAAGAAATCCCATTTGACTATTGTTTTGATAATCTTCTTCGCTTTCGAACAACTCGTGCGCCTTTCG‑AGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGAAAAGCTGTGCTTGATATCGAGATCATCCATGATAATTCTGCCGCCCATATTAGCTTCg < 1:324901/249‑1 (MQ=255) ttCTGCGATAGCAGCAGATATGCCAGTAAAGAAATCCCATTTGACTATTTTTTTGATAATCTTCTTCGCTTTCGAACAACTCGTGCGCCTTTCG‑AGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGAAAAGCTGTGCTTGATATCGAGATCATCCATGATAATTCTGCCGCCCATATTAGCTTCGCCGAGGATTTACCGGAGCTATGATTAGCGCAATCAGAGatat < 1:260142/249‑1 (MQ=255) gCGATAGCAGCAGATATGCCAGTAAAGAAATCCCATTTGACTATTTTTTTGATAATCTTCTTCGCTTTCGAACAACTCGTGCGCCTGTCG‑AGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGAAAAGCTGTGCTTGATATCGAGATCATCCATGATAATTCTGCCGCCCATATTAGCTTCGCCGAGGATTTACCGGAGCTATGATTAGCGCAAGCAGAGATATAGTCTg < 1:312295/251‑1 (MQ=255) aTAGCAGCAGATATGCCAGTAAAGAAATCCCATTTGACTATTTTTTTGATAATCTTCTTCGCTTTCGAACAACTCGTGCGCCTTTCG‑AGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGAAAAGCTGTGCTTGATATCGAGATCATCCATGATAATTCTGCCGCCCATATTAGCTTCGCCGAGGATTTACCGGAGCTATGATTAGCGCAATCAGAGATATAGTCTGAgg < 1:477856/251‑1 (MQ=255) agcagcAGATATGCCAGTAAAGAAATCCCATTTGACTATTTTTTTGATAATCTTCTTCGCTTTCGAACAACTCGTGCGCCTTTCG‑AGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGAAAAGCTGTGCTTGATATCGAGATCATCCATGATAATTCTGCCGCCCATATTAGCTTCGCCGAGGATTTACCGGAGCTATGATTAGCGCAATCAGAGATATAGTCTGAggg > 1:52477/1‑250 (MQ=255) agcagaAGATATGCCAGGAAAGAAATCGCATTTGACTATTTTTTTGATAATCTTCTTCGCTTTCGAACGACTCGTGCGCCTTGCTTAGA‑GCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCACGTTTTGAAAAGCAGTGCTTGATATCGAGATCATCTATGATAATTCTGCCGCCCATATAAACATCACCGAGATTTTACAGGCGCAATGATTAGCGAAATCatagttatttccttatgg > 2:344456/1‑233 (MQ=255) tatGCCAGTAAAGAAATCCCATTTGACTATTTTTTTGATAATCTTCTTCGCTTTCGAACAACTCGTGCGCCTTTCG‑AGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGAAAAGCTGTGCTTGATATCGAGATCATCCATGATAATTCTGCCGCCCATATTAGCTTCGCCGAGGATTTAcc > 2:83583/1‑202 (MQ=255) tatGCCAGTAAAGAAATCCCATTTGACTATTTTTTTGATAATCTTCTTCGCTTTCGAACAACTCGTGCGCCTTTCG‑AGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGAAAAGCTGTGCTTGATATCGAGATCATCCATGATAATTCTGCCGCCCATATTAGCTTCGCCGAGGATTTAcc < 1:83583/202‑1 (MQ=255) atGCTAGTAAAGAAATACCATGTGACTATTGTTTTGATAATCTTCTTCGCTTTCGAACAACTCGTGCGCCTTTCG‑AGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGAAAAGCGGTGCTTGAGATCGAGATCATCCATGATAATTCTGCCGCCCATATTAGCTTCGCCGAGGATTTACCGGAGCTATGATTAGCGCAATCAGAGATATAGTCTGAGGGAAAAACAGCaa < 2:397833/251‑1 (MQ=255) aaaGAAATCCCATTTGACTATTTTTTTGATAATCTTCTTCGCTTTCGAACAACTCGTGCGCCTTTCG‑AGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGAAAAGCTGTGCTTGATATCGAGATCATCCATGATAATTCTGCCGCCCATATTAGCTTCGCCGAGGATTTACCGGAGCTATGATTAGCGCAATCAGAGATATAGTCTGAGGGAAAAACAGCAAATTTAtt < 1:154141/250‑1 (MQ=255) aataaaTACCATTTGATTATTTTTTTGATAATCTTCTTCGCTTTCGAACAACTCGTGCGCCTTTCG‑AGAAGCAAGCATTATATAATGCCAGGACAGTTCTTCTTCAATTGTCCCGTTTTGAAAAGCTGTGCTTGATATCGAGATCATCCATGATAATTCTGCCGCCCATATTAGCTTCGCCGAGGATTTACCGGAGCTATGATTAGCGCAATCAGAGATATAGTCTGAGGGAAAAACAGCAAATGTATTca < 2:526180/248‑1 (MQ=255) gACTATTTTTTTGATAATCTTCTTCGCTTTCGAACAACTCGTGCGCCTTTCG‑AGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGAAAAGCTGTGCTTGATATCGAGATCATCCATGATAATTCTGCCGCCCATATTAGCTTCGCCGAGGATTTACCGGAGCTATGATTAGCTTAATCAGAGATATAGTCTGAGGGAAAAACAGCAAATTTATTCAACAAGGCGATAAc < 1:222617/250‑1 (MQ=255) ttttGATAATCTTCTTCGCTTTCGAACAACTCGTGCGCCTTTCG‑AGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGACCCGTTTTGAAAAGCTGTGCTTGATATCGAGATCATCCATGATAATTCTGCCGCCCATATTAGCTTCGCCGAGGATTTACCGGAGCTATGATTAGCGCAATCAGAGATCTAGTCTGAGGGAAAAACAGCAAATTTATTCAACAAGGCGATAACCTGCTCTgg > 2:310550/1‑251 (MQ=255) gATAATCTTCTTCGCTTTCGAACAACTCGTGCGCCTTTCG‑AGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGAAAAGCTGTGCTTGATATCGAGATCATCCATGATAATTCTGCCGCCCATATTCGCTTCGCCGAGGATTTACCGGAGCTATGATTAGCGCAATCAGAGATATAGTCTGAGGGAAAAACAGCAAATTTATTCAACAAGGCGATAACCTGCTCTGGGGCt > 1:537566/1‑251 (MQ=255) acaacTCGTGCGCCTTTCG‑AGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCTTTTTGAAAAGCTGTGCTTGATATCGAGATCATCCATGATCATTCTTCCGCACATATTAGCTTCGCCGAGGATTTCCCGTATCTATACTTAGCGCATTCAGTGATATAGTCTGAGGGAAAAACAGCAAATTTATTCAACACGGCGATACCCTGCTCTGGGGCTTCCTCTAAGCTTGCTTTaa > 2:145244/1‑249 (MQ=255) tGCGCCTCTCG‑AGACGCAATCATTAAATAATCCCAGGCCCGTTCTTCTTAAATTGTAGCGTTCTGAAAAGCTGCGCTTGATATTAGGATAATCCCTGCACATTCTGACGCCCATATCAGCTTCGCCGCGGCTTTACCGGAGCTATGATTCGCGCAATCAGAGATATAGTCTGAGGGTAAAACAGCAAATTTATCCAACACGGCGGTAAACTGCTCTGGGGCTTCCTCCATGTTTGCTTTAAAGGAATTGGc > 2:333513/1‑251 (MQ=255) caTTATAGAATGCCATGCCATTTCTGCCTCAACTTTCCCGTTTTGAAAAGCTGTGCTTGATATCGAGATCATCCATGATAATCCCGCCGCCCATATTAGCTTCGCCGAGGATTTACCGGAGCTATGATTAGCGCAATCAGAGAGATAGTCTGAGGGAAAAACAGCAAATTTATTCAACAAGGCGAGAACCTGCTCTTGCGCTTCCTCCATGTGTGCTTTAAAGGTATTGGCTCCATGGTCGCCagaaagaa < 2:270937/251‑1 (MQ=255) aaTGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGAAAAGCTGTGCTTGATATCGAGATCATCCATGATAATTCTGCCGCCCATATTAGCTTCGCCGAGGATTTACCGGAGCTATGATTAGCGCAATCAGAGATATAGTCTGAGGGAAAAACAGCAAATTTATTCAACAAGGCGATAACCTGCTCTGGGGCTTCCTCCATGTTTGCTTTAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTcc > 1:93620/1‑251 (MQ=255) ccaggccagTTCTTCTTCAATTGTCCCGTTTTGAAAAGCTGTGCTTGATATCGAGATCATCCATGATAATTCTGCCGCCCATATTAGCTTCGCCGAGGATTTACCGGAGCTATGATTAGCGCAATCAGAGATATAGTCTGAGGGAAAAACAGCAAATTTATTCAACAAGGCGATAACCTGCTCTGGGGCTTCCTCCATGTTTGCTTTAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCAtt > 1:427826/1‑250 (MQ=255) ttcttcAATTGTCCCGTTTTGAAAAGCTGTGCTTGATATCGAGATCATCCATGATAATTCTGCCGCCCGTATTAGCTTCACCGCGGATTTACCGGAGCTATGATTAGCGCAATCAGAGATATAGTATGAGGGAAAAACAGCAAATTTATTCAACAAGACGATAACCTGCTCTGGAGCTTCCTCCATTTTTGCTTTAAAGGTATGGGATCCATGGTCGCCAGACAGAAACTGCTCCATTAAGGcgtagtaac > 2:23766/1‑243 (MQ=255) tcAATTGTCCCGTTTTGAAAAGCTGTGCTTGATATCGAGATCATCCATGATAATTCTGCCGCCCATATTAGCTTCGCCGAGGATTTACCGGAGCTATGATTAGCGCAATCAGAGATATAGTCTGAGGGAAAAACAGCAAATTTATTc < 1:412199/147‑1 (MQ=255) tcAATTGTCCCGTTTTGAAAAGCTGTGCTTGATATCGAGATCATCCATGATAATTCTGCCGCCCATATTAGCTTCGCCGAGGATTTACCGGAGCTATGATTAGCGCAATCAGAGATATAGTCTGAGGGAAAAACAGCAAATTTATTc > 2:412199/1‑147 (MQ=255) tGAAAAGCTGAGCTTGATATCGAGAACATCCATGATAATTCTGCAGCCCATATTAGCTTCGCCGAGGCTTTACCGGAGCTATGATTAGCGCAATCAGAGATATAGTCTGAGGGAAAAACAGCAAATTTATTCAACAAGGCGATAACCTGCTCTGGGGCTTCCTCCATGTTTGCTTGAAAGGTATTGGCTCCATGGCCGCCAGAAAGAAAATGCTCCCTTAAGGCACAATAAATTTCGCTATATTCgtaacc > 2:128522/1‑246 (MQ=255) gCTTGATATCGAGATCATCCATGATAATTCTGCCGCCCATATTAGCTTCGCCGAGGATTTACCGGAGCTATGATTAGCGCAATCAGAGATATAGTCTGAGGGAAAAACAGCAAATTTATTCAACAAGGCGATAACCTGCTCTggg > 2:188220/1‑145 (MQ=255) gCTTGATATCGAGATCATCCATGATAATTCTGCCGCCCATATTAGCTTCGCCGAGGATTTACCGGAGCTATGATTAGCGCAATCAGAGATATAGTCTGAGGGAAAAACAGCAAATTTATTCAACAAGGCGATAACCTGCTCTggg < 1:188220/145‑1 (MQ=255) gATATCGAGATCATCCATGATAATTCTGCCGCCCATATTAGCTTCGCCGAGGATTTACCGGAGCTATGATTAGCGCAATCAGAGATATAGTCTGAGGGAAAAACAGCAAATTTATTCAACAAGGCGATAACCTGCTCTGGGGCTTCCTCCATGTTTGCTTTAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTaa < 1:148422/251‑1 (MQ=255) gaTCATCCATGATAATTCTGCCGCCCATATTAGCTTCGCCGAGGATTTACCGGAGCTATGATTAGCGCAATCAGAGATATAGTCTGAGGGAAAAACAGCAAATTTATTCAACAAGGCGATAACCTGCTCTGGGGCTTCCTCCATGTTTGCTTTAAAGGTATTGGCTCCATg < 2:399551/171‑1 (MQ=255) gaTCATCCATGATAATTCTGCCGCCCATATTAGCTTCGCCGAGGATTTACCGGAGCTATGATTAGCGCAATCAGAGATATAGTCTGAGGGAAAAACAGCAAATTTATTCAACAAGGCGATAACCTGCTCTGGGGCTTCCTCCATGTTTGCTTTAAAGGTATTGGCTCCATg > 1:399551/1‑171 (MQ=255) aTGATAATTCTGCCGCCCATATTAGCTTCGCCGAGGCTTTCCCGGAGCTATGATTAGCGCAATCAGAGATATAGTCTGAGGGAAAAACAGCAAATTTATTCAACAAGGCGATAACCTGCTCTGGGGCTTCCTCCATGTTTGCTTTAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATAACTTTCGCTATCTTCGATACCCCATTg > 2:498793/1‑226 (MQ=255) aTGATAATTCTGCCGCCCATATTAGCTTCGCCGAGGATTTACCGGAGCTATGATTAGCGCAATCAGAGATATAGTCTGAGGGAAAAACAGCAAATTTATTCAACAAGGCGATAACCTGCTCTGGGGCTTCCTCCATGTTTGCTTTAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATAACTTTCGCTATCTTCGATACCCCATTg < 1:498793/226‑1 (MQ=255) | TGTCGTAACGATAACACGCTTCAAGTTCAGCATCCGTTAACTTTCTGCGATAGCAGCAGATATGCCAGTAAAGAAATCCCATTTGACTATTTTTTTGATAATCTTCTTCGCTTTCGAACAACTCGTGCGCCTTTCG‑AGAAGCAAGCATTATATAATGCCAGGCCAGTTCTTCTTCAATTGTCCCGTTTTGAAAAGCTGTGCTTGATATCGAGATCATCCATGATAATTCCGCCGCCCATATTAGCTTCGCCGAGGATTTACCGGAGCTATGATTAGCGCAATCAGAGATATAGTCTGAGGGAAAAACAGCAAATTTATTCAACAAGGCGATAACCTGCTCTGGGGCTTCCTCCATGTTTGCTTTAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAA > NC_000913/1843917‑1844370 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |