| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,776,100 | G→A | E172K (GAA→AAA) | ydiF → | putative acetate‑CoA transferase YdiF |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,776,100 | 0 | G | A | 96.8% | 90.3 / NA | 31 | E172K (GAA→AAA) | ydiF | putative acetate‑CoA transferase YdiF |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (13/17); minor base C (1/0); total (14/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.52e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.26e-01 | |||||||||||
ATTATGTGGTCACTGGGGACAATCGCCGCGTATTTCTGAACTCGCAGAACAAAATAAAATTATTGCTTATAACTACCCACAAGGTGTACTTACACAAACCTTACGCGCCGCCGCAG‑CCCACCAGCCTGGTATTATTAGTGATATTGGCATCGGGACATTTGTCGATCCACGCCAGCAAGGCGGCAAACTGAATGAAGTCACTAAAGAAGACCTGATTAAACTGGTCGAGTTTGATAACAAAGAATATCTCTATTACAAAGCGATTGCGCCAGATATTGCCTTCATTCGCGCTACCACCTGCGACAGTGAAGGCTACGCCACTTTTGAAGATGAGGTGATGTATCTCGACGCATTGGTTATTGCCCAGGCGGTGCACAATAACGGCGGTATTGTGATGATGCAGGTG‑CAGAAAATGGTTAAGAAAGCCACGCTGCATCCTAAATCTGTCCGTATTCCGGGTTATCTGGTGGATATTGTGGTGGT > NC_000913/1775859‑1776341 | catATGTGGTCACTGGGGACAATCGCCGCGTATTTCTGAACTCGCAGAACAAAATAAAAGTATTGCGTATAACTACCCAAAAGGTGTACTTACACAAACCTTACGCGCCGCCGCAG‑CCCACCAGCCTGGTATTATTAGTGATATTGGCATCGGGACATTTGTCGATCCACGCCAGCAAGGCGGCAAACTGAATGAAGTCACTAAAGAAGACCTGATTAAACTGGTCGAGTTTGATAACAAAAAATATctct < 2:176228/249‑1 (MQ=255) aTGTGGTCACGTGGGACAATCTCCGCGTATTTCTTAACTCGCAGAACAAAATAAAATTATTGCTTATAACTACCCACAAGGTTTACTTACACCAACCCTACGCTCCGCCGCAG‑CCCACCAGCCTGGTATTATTAGTGATATTGGCATCGGGACATTTGTCGATCCACGCCAGCAAGGCGGCAAACTGAATGAAGTCACTAAAGAAGACCTGATTAAACTGTTCGAGTTTGATAACAAAAAATATCTCTAtt < 2:454963/251‑1 (MQ=255) tgtgGTCACTGGGGACAATCGCCGCGTATTTCTGAACTCGCAGAACAAAATAAAATTATTGATTATAACTACCCACAAGGTGTACTTACACAAACCTTACGCGCCGCCGCAG‑CCCACCAGCCTGGCATTATTAGTGATATTGGCATCGGGACATTTGTAGATCCACGCCAGCAATGCGGCAAACTGAATGAAGTCACTAAAGAAGACCTGCTTAAACTGGGCGAGTTTGATAACAAAAAATATCTCTAtt > 2:383338/1‑250 (MQ=255) tgggACAATCGCCGCGTCTTTCTGACGTCGAAGAACAAATTAAAATTATTTATTATAACTACCCACAAGGTGTACTTACACAAACCTTACGAGCCGCCGCAG‑CCCACCAGCCTGGAATTATTAGAAATATTGGCATCGGGACATTTGTCGATCCACGCCAGCAAGGCGGCAAACTGAATGAAGTCACTAAAGAAGACCTGATTAAAATGGTCGAGATTGATAACAAACAAGATATATATTAAAAAGAGAtt > 2:78204/2‑251 (MQ=255) ggggACAATCGCCGCGTATTTCTGAACTCGCAGAACAAAATAAAATTATTGCTTATAACTACCCACAAGGTGTACTTACACAAACCTTACGCGCCGCCGCAG‑CCCACCAGCCTGGTATTATTAGTGATATTGGCATCGGGACATTTGTCGATCCACGCCAGCAAGGCGGCAAACTGAATGAAGTCACTAAAGAAGACCTGATTAAACTGGTCGAGTTTGATAACAAAAAATATCTCTATTACAAAGCGAtt < 1:46079/251‑1 (MQ=255) cAATCGCCGCGTATTTCTGAACTCGCAGAACAAAATAAAATTATTGCTTATAACTACCCACAAGGTGTACTTACACAAACCTTACGCGCCGCCGCAG‑CCCACCAGCCTGGTATTATTAGTGATATTGGCATCGGGACATTTGTCGATCCACGCCAGCAAGGCGGCAAACTGAATGAAGTCACTAAAGAAGACCTGATTAAACTGGTCGAGTTTGATAACAAAAAATATCTCTATTACAAAGCGATTGCGcc > 1:192222/1‑251 (MQ=255) cgccgtggaTTTCTGAACGCGCAGAACAAAATAAAATTATTGCTTATAACTACCCACAAGGTGTACTTACACAAACCTTACGCGCCGCCGCAG‑CCCACCAGCCTGGTATTATTAGTGATATTGGCATCGGGACATTTGTCGATCCACGCCAGCAAGGCGGCAAACTGAATGAAGTCACTAAAGAAGACCTGATTAAACTGGTCGAGTTTGATAACAAAAAATATCTCTATTACAAAGCGATTGCGCCAGat < 2:511761/243‑1 (MQ=255) cAGAACAAAATAAAATTATTGCTTATAACTACCCACAAGGTGTACTTACACAAACCTTACGCGCCGCCGCAG‑CCCACCAGCCTGGTATTATTAGTGATATTGGCATCGGGACATTTGTCGATCCACGCCAGCAAGGCGGCAAACTGAATGAAGTCACTAAAGAAGACCTGATTAAACTGGTCGAGTTTGATAACAAAAAATATCTCTATTACAAAGCGATTGCGCCAGATATTGCCTTCATTCGCGCTacc < 1:130125/251‑1 (MQ=255) cAGAACAAAATAAAATTATTGCTTATAACTACCCACAAGGTGTACTTACACAAACCTTACGCGCCGCCGCAG‑CCCACCAGCCTGGTATTATTAGTGATATTGGCATCGGGACATTTGTCGATCCACGCCAGCAAGGCGGCAAACTGAATGAAGTCACTAAAGAAGACCTGATTAAACTGGTCGAGTTTGATAACAAAAAATATCTCTATTACAAAGCGATTGCGCCAGATATTGCCTTCATTCGCGCTacc < 1:113673/251‑1 (MQ=255) tattGCTTATAACTACCCACAAGGTGTACTTACACAAACCTTACGCGCCGCCGCAG‑CCCACCAGCCTGGTATTATTAGTGATATTGGCATCGGGACATTTGTCGATCCACGCCAGCAAGGCGGCAAACTGAATGAAGTCACTAAAGAAGACCTGATTAAACTGGTCGAGTTTGATAACAAAAAATATCTCTATTACAAAGCGATTGCGCCAGATATTGCCTTCATTCGCGCTACCACCTGCGACAGTGa > 1:506415/1‑249 (MQ=255) cTTATAACTACCCACACGGGGTACTTACACAAACCTTACGCGCCGCCGCAG‑CCCACCAGCCTGGTATTATTAGTGATATTGGCATCGGGACATTTGTCGCTCCACGCCAGCAAGGCGGCAAACTGCATGAAGTCACTAAAGAAGACCTGATTAAACTGGTCGAGTTTGATAACAAAAAATATCTCTATTACAAAGCGATTGCGCCAGATATTGCCTTCATTCTCGCTACCACCTTCGACAGTGAAGGcaac > 2:276889/1‑248 (MQ=255) aaCTACCCACAAGGTGTACTTACACAAACCTTACGCGCCGCCGCAG‑CCCACCAGCCTGGTATTATTAGTGATATTGGCATCGGGACATTTGTCGATCCACGCCAGCAAGGCGGCAAACTGAATGAAGTCACTAAAGAAGACCTGATTAAACTGGTCGAGTTTGATAACAAAAAATATCTCTATTACAAAGCGATTGCGCCAGATATTGCCTTCATTCGCGCTACCACCTGCGACAGTGAAGGCTACGCCAc > 1:83361/1‑251 (MQ=255) cTACCCACAAGGTGTACTTACACAAACCTTACGCGCCGCCGCAG‑CCCACCAGCCTGGTATTATTAGTGATATTGGCATCGGGACATTTGTCGATCCACGCCAGCAAGGCGGCAAACTGAATGAAGTCACTAAAGAAGACCTGATTAAACTGGTCGAGTTTGATAACAAAAAATATCTCTATTACAAAGCGATTGCGCCAGATATTGCCTTc < 1:478012/211‑1 (MQ=255) cTACCCACAAGGTGTACTTACACAAACCTTACGCGCCGCCGCAG‑CCCACCAGCCTGGTATTATTAGTGATATTGGCATCGGGACATTTGTCGATCCACGCCAGCAAGGCGGCAAACTGAATGAAGTCACTAAAGAAGACCTGATTAAACTGGTCGAGTTTGATAACAAAAAATATCTCTATTACAAAGCGATTGCGCCAGATATTGCCTTc > 2:478012/1‑211 (MQ=255) aCTTACACAATCCTGACGCGCCGCCGCAA‑CCCAACAGCCTGGTAGTATTAGTGATATTGTCATCGGGTCATTTGTCGATCCACGCCAGCAAGGCGGCTAACTGAATGAAGTCACTTAAGAATACCTGATTAAACTGGTCGATTTTGATAAAAAAAAATATCCCTATTACAAAGCGATTGCGCCAGATATTGCCTTCATTCGCGCTACCCCCTGCGACAGTGAAGGCTACTCCAcctattaatctgaggtg < 2:446628/250‑17 (MQ=255) tACACAAACCTTACGCGCCGCCGCAG‑CCCACCAGCCTGGTATTATTAGTGATATTGGCATCGGGACATTTGTCGATCCACGCCAGCAAGGCGGCAAACTGAATGAAGTCACTAAAGAAGACCTGATTAAACTGGTCGCGTTTGATAACAAAAAATATCTCTATTACAAAGCGATTGCGCCAGATATTGCCTTCATTCGCGATACCACCTGCGACAGTGAGGGCTACGCCACTTTTGAAGATGAGGTGCTGt > 2:198605/1‑251 (MQ=255) aacaacctttccggccgccgcAGACCCAC‑AGCCTGGTATTATTAGTGATATTGGCATTGGTACATTTGTCGATCCAAGCCAGCAAGGCGGCAAACTGAATGAAGTCACTAAAGAATACATGATTAAACTGGTCGAGTTTGATAACAAAAAATATCTCTATTACAAAGCGATTGCGCCAGATATTGCCTTCATTCGCGCTACCACCTGCGACAGTGAAGGCTACGCCCCTTTTGAAGATGAGGTGATGTAtc < 2:127976/238‑1 (MQ=255) cgcgCAGCCGCAG‑CCCACCAGCCTGGTATTATTAGAGATATTGGCATCGGGACCTTTGTCGATCCACGCCAGAAAGGCGGCAAACTGAATGAAGTCACTAAAGAAGACCTGATTAAACTGGGCGAGTTTGATAACAAAAAATATCTCTATTACAAAGAGATTGTGCCAGATATTGCCTTCATTCGCGCTACCACCTGCGCCAGTGAAGGCTACGCCACTTTTGACGATGAGGTAATGTATCTAGAAGCAtt > 2:363737/1‑251 (MQ=255) ccgcAG‑CCCACCAGCCTGGTATTATTAGTGATATTGGCATCGGGACATTTGTCGATCCACGCCAGCAAGGCGGCAAACTGAATGAAGTCACTAAAGAAGACCTGATTAAACTGGTCGAGTTTGATAACAAAAAATATCTCTATTACAAAGCGATTGCGCCAGATATTGCCTTCATTCGCGCTACCACCTGCGACAGTGAAGGCTACGCCACTTTTGAAGATGAGGTGATGTATCTCGACGCATTGGTTAtt > 1:467978/1‑251 (MQ=255) cAG‑CCCACCAGCCTGGTATTATTAGTGATATTGGCATCGGGACATTTGTCGATCCACGCCAGCAAGGCGGCAAACTGAATGAAGTCACTAAAGAAGACCTGATTAAACTGGTCGAGTTTGATAACAAAAAATATCTCTATTACAAAGCGATTGCGCCAGATATTGCCTTCATTCGCGCTACCACCTGCGACAGTGAAGGCTACGCCACTTTTGAAGATGAGGTGATGTATCTCGACGCATTGGTTATTGcc < 1:48470/251‑1 (MQ=255) ccaccaGCCTGGTATTATTAGTGATATTGGCATCGGGACATTTGTCGATCCACGCCAGCAAGGCGGCAAACTGAATGAAGTCACTAAAGAAGACCTGATTAAACTGGTCGAGTTTGATAACAAAAAATATCTCTATTACAAAGCGATTGCGCCAGATATTGCCTTCATTCGCGCTACCACCTGCGACAGTGAAGGCTACGCCACTTTTGAAGATGAGGTGATGTATCTCGACGCATTGGTTATTGCCCAgg < 1:383590/251‑1 (MQ=255) ggTATTATTAGTGATATTGGCATCGGGACATTTTGCGATCCACGCCAGCAAGGCGGCAAACTGAATGAAGTCACTAAAGAAGACCTGATGAAACTGGTCGAGTTTGATAACAAAAAATATCCCTATTACAAAGCGATTGCGCCAGATATTGCCTTCATTCGCGCTACCACCTGCGACAGTGAAGGCTACGCCACTTTTGAAGATGAGTTGATGTATCTCGACGCATTTGTTATTGCCCAGGCGGTGcac < 2:192222/249‑1 (MQ=255) tGATATTGGCATCGGGACATTTGTCGATCCACGCCAGCAAGGCGGCAAACTGAATGAAGTCACTAAAGAAGACCTGATTAAACTGGTCGAGTTTGATAACAAAAAATATCTCTATTACAAAGCGATTGCGCCAGATATTGCCTTCATTCGCGCTACCACCTGCGACAGTGAAGGCTACGCCACTTTTGAAGATGAGGTGATGTATCTCGACGCATTGGTTATTGCCCAGGCGGTGCACAATAACGGCGGt > 1:25200/1‑250 (MQ=255) atatTGGCATCGGGACATTTGTCGATCCACGCCAGCAAGGCGGCAAACTGAATGAAGTCACTAAAGAAGACCTGATTAAACTGGTCGAGTTTGATAACAAAAAATATCTCTATTACAAAGCGATTGCGCCAGATATTGCCTTCATTCGCGCTACCACCTGCGACAGTGAAGGCTACGCCACTTTTGAAGATGAGGGGATGTATCTCGACGCATTGGTTATTGCCCCGGCGGAGCACAATAAcggcggggt > 2:162580/1‑247 (MQ=255) tgCATCGGGACAGTTTTCTAGCCACTCCAGCAAGGCGGCAAACTTAATGAAGACACTAAAGAAGACCTGATTAAACTGGACGAGTTTGATAACAAAAAATATCTCTATTACAAAGCGATTGCGCCAGATATTGCCTTCATTCGCGCTACCACCTGCGACAGTGAATGCTACGCCACTTTTGAAGATGAGGTGATGTATCTCGACGCAATGGTTATTGCCCAGGCGGTGCACAATAACGGCGGTATTGtga < 2:85504/249‑1 (MQ=255) aTCGGGACATTTGTCGATCCACGCCAGCAAGGCGGCAAACTGAATGAAGTCACTAAAGAAGACCTGATTAAACTGGTCGAGTTTGATAACAAAAAATATCTCTATTACAAAGCGATTGCGCCAGATATTGCCTTCATTCGCGCTACCACCTGCGACAGTGAAGGCTACGCCACTTTTGAAGATGAGGTGATGTATCTCGACGCATTGGTTATTGCCCAGGc > 1:414692/1‑221 (MQ=255) aTCGGGACATTTGTCGATCCACGCCAGCAAGGCGGCAAAATGAATGAAGTCACTAAAGAAGACCTGATTAAACTGGTCGAGTTTGATAACAAAAAATATCTCTATTACAAAGCGATTGCGCCAGATATTGCCTTCATTCGCGCTACCACCTGCGACAGTGAAGGCTACGCCACTTTTGAAGATGAGGTGATGTATCTCGACGCATTGGTTATTGCCCAGGc < 2:414692/221‑1 (MQ=255) gaCCTGATTAAACTGGTCGAGTTTTATAACAAAAAATATCTCTATTACAAAGCGATTGCGCCAGATATTGCCTTCATTCGCGCTACCACCTGCGACAGTGAAGGCTACGCCACTTTTGAAGATGAGGTGATGTATCTCGACGCATTGGTTATTGCCCAGGCGGTGCACAATAACGGCGGTATTGTGATGATGCAGGTG‑CAGAAAATGGTTAAGAAAGCCACGCTGCATCCTAAATCTGTCCGTATTCCgtg < 2:87695/251‑3 (MQ=255) cTGATTAAACTGGTCGAGTTTGATAACAAAAAATATCTCTATTACAAAGCGATTGCGCCAGATATTGCCTTCATTCGCGCTACCACCTGCGACAGTGAAGGCTACGCCACTTTTGAAGATGAGGTGATGTATCTCGACGCATTGGTTATTGCCCAGGCGGTGCACAATAACGGCGGTATTTGGATGATGCAGGGGGCGCAAAAGGGTTA‑GAAAGCCACCCCGCATCCTCAATATGTTCGCATTTCggggt > 1:279761/1‑248 (MQ=255) tAAACTGGTCGACATGGAGAAAAAAAAATATCGCTACTAAAAAGCGAATGCTCCAGATAGTGCCTTCATACGCGATACCACATGCGATAGTGAAGGCTACGCCACTGATTAAGATGAGGTGATGTATCTCGACGGATTGGTTATTGGCCAGGCGGTGCACAAAAACGGCGGTATTGGGATAATGCAGTTG‑TAGAAAATGTGTAAGAAAGCCACGCTGCATCCTAAATCTGTGCGTATGCCGGGTTATCtg < 2:237663/250‑1 (MQ=255) gATAACAAAAAATATCTCTAGTACAATGCGATTGCGCCAGATAATGCCTTCATTCGCGCTACCGACTGCGACTGTGAAGGCTACGCAACTTTTGAAGATGAGGTGATGTACTTCGACGCATTGGTGATTGCCCAGGCTGTTCCCAAGATCGGCGGTATTGTGATGATGCAGGTG‑CAGAAAATGGTTAAGAAAGCCACGTTGCATCCTAATTCTGTCCGTATTCCGGGTTACCTGGTGGATCATgtggttga < 2:200952/251‑4 (MQ=255) | ATTATGTGGTCACTGGGGACAATCGCCGCGTATTTCTGAACTCGCAGAACAAAATAAAATTATTGCTTATAACTACCCACAAGGTGTACTTACACAAACCTTACGCGCCGCCGCAG‑CCCACCAGCCTGGTATTATTAGTGATATTGGCATCGGGACATTTGTCGATCCACGCCAGCAAGGCGGCAAACTGAATGAAGTCACTAAAGAAGACCTGATTAAACTGGTCGAGTTTGATAACAAAGAATATCTCTATTACAAAGCGATTGCGCCAGATATTGCCTTCATTCGCGCTACCACCTGCGACAGTGAAGGCTACGCCACTTTTGAAGATGAGGTGATGTATCTCGACGCATTGGTTATTGCCCAGGCGGTGCACAATAACGGCGGTATTGTGATGATGCAGGTG‑CAGAAAATGGTTAAGAAAGCCACGCTGCATCCTAAATCTGTCCGTATTCCGGGTTATCTGGTGGATATTGTGGTGGT > NC_000913/1775859‑1776341 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |