| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,536,304 | C→T | G105D (GGC→GAC) | narV ← | nitrate reductase Z subunit gamma |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,536,304 | 0 | C | T | 91.4% | 96.9 / NA | 35 | G105D (GGC→GAC) | narV | nitrate reductase Z subunit gamma |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (15/17); minor base G (0/3); total (15/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.44e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.18e-01 | |||||||||||
AGGCGGAAGACGAACGCTACGCCGTTGAGCATCTCTGACGATCCACCACGGAAAGTGACAATGCTTTGCGCCCAACCCACCAGCTTCATCATTTCGCTACCATCAGGATACTGTGCTGAAAACGGTATGGTACTTAGCCCCAA‑CAGACACTGGATCAGCAAAATGCTCATGATGATGATATCCGGCGTAGTGGAAGTGGCACGCACGCGCTGATTTGTCAGCCTGCGCCACAGCAGTCCTGCGCCGCCAATCAACGTCAACACACCGCAAATACCGCCGAGCACCATCGCCATGAGTTGTTTCGCTGCCACTGGCAAAAACCACGCGTACATCCAGTGCGGCGTTAACATGCCGAACAAGTGCCCGAAGAAAATCCCCAAAATGCCGATATGGAACAGATTCGACCATATCACCATCCCGCGTTTATCGAGCATTTGACTTGAGGAGGCGCGCCAGGTGTACTGCCCGTAGTCGT > NC_000913/1536058‑1536532 | aGGCGGAAGACGAACGCTACGCCGTTGAGCATCTCTGACGATCCACCACGGAAAGTGACAATGCTTTGCGCCCAACCCACCAGCTTCATCATTTCGCTACCATCAGGATACTGTGCTGAAAACGGTATGGTACTTAGCCCCAA‑CAGACACTGGATCAGCAAAATGCTCATGATGATGATATCCGGCGTAGTGGAAGTGGCACGCACGCGCTGATTTGTCAGCCTGCGCCACAGCAGTCCTGCGCCGTCAAt > 1:208386/1‑251 (MQ=255) ccctctcTGACGATCCACCACGTAAATCTACAATTCTTTGCGCCCAACCCACCAGCTTCATCATTCCGCTACCATCAGTATACTGTGCTGAAAACGGTATGGTACTTAGCCCCAA‑CAGTCACTGGATCAGCAAAATGCTCATGATGAGGATACCCGGCGTAGTGGAAGGGGCACGCACGCGCTGATTTATCAGCCTGCGCCACAGCATTCCTGCGCCGTCAATCAACGTCAACACACCGCAAATAccgccg < 2:169098/248‑1 (MQ=255) tctGACGATCCACCACGGAAAGTGACAATGCTTTGCGCCCAACCCACCAGCTTCATCATTTCGCTACCATCAGGATACTGTGCTGAAAACGGTATGGTACTTAGCCCCAA‑CAGACACTGGATCAGCAAAATGCTCATGATGATGATATCCGGCGTAGTGGAAGTGGCACGCACGCGCTGATTTGTCAGCCTGCGCCACAGCAGTCCTGCGCCGTCAATCAACGTCAACACACCGCAAATACCGCCGAGCAc > 1:19168/1‑251 (MQ=255) ctGACGATCCACCACGGAAAGTGACAATGCTTTGCGCCCAACCCACCAGCTTCATCATTTCGCTACCATCAGGATACTGTGCTGAAAACGGTATGGTACTTAGCCCCAA‑CAGACACTGGATCAGCAAAATGCTCATGATGATGATATCCGGCGTAGTGGAAGTGGCACGCACGCGCTGATTTGTCAGCCTGCGCCACAGCAGTCCTGCGCCGTCAATCAACGTCAACACACCGCAAATACCGCCGAGCAcc > 1:449454/1‑251 (MQ=255) ccacGGAAAGTGACAATGCTTTGCGCCCAACCCACCAGCTTCATCATTTCGCTACCATCAGGATACTGTGCTGAAAACGGTATGGTACTTAGCCCCAA‑CAGACACTGGATCAGCAAAATGCTCATGATGATGATATCCGGCGTAGTGGAAGTGGCACGCACGCGCTGATTTGTCAGCCTGCGCCACAGCAGTCCTGCGCCGTCAATCAACGTCAACACACCGCAAATACCGCCGAGCACCATCGCCATGAg < 1:335420/251‑1 (MQ=255) cacgataaaggacatgctcttGCGCCCACCACACCAGATCCATCCTTACGCTACCATAAGGATACTGTGCTGAAAACGGTATGGTACCGAGCCCCAA‑CAGACACGGGAGCAGCAAATGGCTCATGATGATGATACCCGGCGTAGTGGAAGTGGCACGCACACGCTGATTTGTCAGCCTGCGCCACAGCATACCTGCGCCGGCAATAAACGTCAACACGCCGCAATTACCGCCGAGCACCATCGACATGAgt < 2:436519/232‑1 (MQ=255) acGGAAAGTGACAATGCTTTGCGCCCAACCCACCAGCTTCATCATTTCGCTACCATCAGGATACTGTGCTGAAAACGGTATGGTACTTAGCCCCAA‑CAGACACTGGATCAGCAAAATGCTCATGATGATGATATCCGGCGTAGTGGAAGTGGCACGCACGCGCTGATTTGTCAGCCTGCGCCACAGCAGTCCTGCGCCGTCAATCAACGTCAACACACCGCAAATACCGCCGAGCACCATCGCCATGAgtt < 1:169601/251‑1 (MQ=255) ggAAAGTGACAATGCTTTGCGCCCAACCCCCCAGCTTCATCATTGCGCTACCATCAGGATACTGTGCTGAAAACGGTATGGTACTTAGCCCCAA‑CAGCCACTGGATCAGCAAAATGCTCATGATGATGATATCCGGCGTAGTGGAAGTGGCACGCACGCGTTGATTTGTCAGCCTGCGCCACAGCAGTCCTGCGCCGTCAATCAACGTCAACACTCCGCAAATACCGCCGAGCACCCTCGCCATGAgttgt < 2:412739/251‑1 (MQ=255) gCTTTGCGCCCAACCCACCAGCTTCATCATTTCGCTACCATCAGGATACTGTGCTGAAAACGGTATGGTACTTAGCCCCAA‑CAGACACTGGATCAGCAAAATGCTCATGATGATGATATCCGGCGTAGTGGAAGTGGCACGCACGCGCTGATTTGTCAGCCTGCGCCACAGCAGTCCTGCGCCGTCAATCAACGTCAACACACCGCAAATACCGCCGAGCACCATCGCCATGAGTTGTTTCGCTGCCACt < 1:426284/250‑1 (MQ=255) gcCCAACCCACCAGCTTCATCATTTCGCTACCATCAGGATACTGCGCTGAAAACGGTATGGTACTTAGCCCCAA‑CAGACACTGGATCAGCAAAATGCTCATGATGATGATATCCGGCGTAGTGGAAGTGGCACGCACGCGCTGATTTGTCAGCCTGCGCCACAGCAGTCCTGCGCCGTAAATCAACGTCAACCCACCGCTAATACCGCCGAGCACCACAGCCATGAGTTGTTTCGCTGCCACGGGCaaaa > 2:214693/1‑250 (MQ=255) ccccAACCCACCAGCTTCATCATTTCGCTACCATCAGGATTCTGTGCTGAAAACGTTTTGGTACTGAGCCCCAA‑CAGACACTGGATCAGCAAAATGCTCATGATGATGATATCCGGCGTAGTGGAAGTGGCACGCCCGCGCTGATTTGTCAGCCTGCGCCACAGCAGTCCTGCGCCGTCAATCAACGTCAACACCCCGCAAATACCGCCGAGCACCATCGCCATGAGTTGTTTCGCTGCCACTGGCaaaaa < 2:449454/250‑1 (MQ=255) aaccaacctacTTCATCATTTCCCTACCATTAGGTTACTGATCTGAAAGCGGTATGGTACTTGGCCCCAA‑CCGACACTGGATCAGCAAAATGCTCATGATGATGATAACCGTCGTAGTGGAAGTGGCACGCACGCGCTGATTTGTCAGCCTGCGCCACAGCAGTCCTGCGCCTTCAATCAACGTCAACGCCCCGCAAATACCGCCGAGCACCATCGCCATGAGTTGTTTCGATGCCACTGGCAAAAACCAc < 2:417945/241‑1 (MQ=255) agcatcagcattccgctcccaataGGATAATGTGACGAAAACGGAATGGTACTTAGCCCCAA‑CAGACACTGGATCAGCAAAATGCTCATGATGATGATATCCGGCGTAGTGGAAGTGGCACGCACGCGCTGATTTGGCAGCCTGCGCCACAGCAGTCCTGCGCCGTCAATCAACGTCAACACACCGCAAATACCGCCGAGCACCATCGCCATGAGGTGTTTCGCTGCCACTGGCAAAAACCACGCGTACAt < 2:78556/228‑1 (MQ=255) tcatcaTTTCGCTACCATCAGGATACTGTGCTGAAAACGGTATGGTACTTAGCCCCAA‑CAGACACTGGATCAGCAAAATGCTCATGATGATGATATCCGGCGTAGTGGAAGTGGCACGCACGCGCTGATTTGTCAGCCTGCGCCACAGCAGTCCTGCGCCGTCAATCAACGTCAACACACCGCAAATACCGCCGAGCACCATCGCCATGAGTTGTTTCGCTGCCACTGGCAAAAACCACGCGTACATcc < 1:88761/249‑1 (MQ=255) tcatcaTTGCGCTACCATCAGGATACTGTGCTGAAAACGGTATGGTACTTAGCCCCAA‑CAGACACTGGATCAGCAAAATGCTCATGATGATGATATCCGGCGTAGTGGAAGTGGCACGCACGCGCTGATTTGTCAGCCTGCGCCACAGCAGTCCTGCGCCGTCAATCAACGTCAACACTCCGCAAATACCGCCGAGCACCATCGCCATGAGTTGTTTCGCTGCCACTGGCAAAAACCACGCGTACATCCa < 1:42272/250‑1 (MQ=255) cTACCATCAGGATACTGTGCTGAAAACGGTATGGTACTTAGCCCCAA‑CAGACACTGGATCAGCAAAATGCTCATGATGATGATATCCGGCGTAGTGGAAGTGGCACGCACGCGCTGATTTGTCAGCCTGCGCCACAGCAGTCCTGCGCCGTCAATCAACGTCAACACACCGCAAATACCGCCGAGCACCATCGCCATGAGTTGTTTCGCTGCCACTGGCAAAAACCACGCGTACATCCAGTGCGGCGTTa > 2:412648/1‑250 (MQ=255) aCCAGCAGGATACTGTGCTGAAAACGGTATGGTACTTAGCCCCAA‑CAGACACTGGATCAGCAAAATGCTCATGATGATGATATCCGGCGTAGTGGAAGTGGCACGCACGCGCTGATTTGTCAGCCTGCGCCACAGCAGTCCTGCGCCGTCAATCAACGTCAACACACCGCAAATACCGCCGAGCACCATCGCCATGAGTTGTTTCGCTGCCACTGGCAAAAACCACGCGTACATCCAGTGCGGCGTTAAc < 1:463614/250‑1 (MQ=255) ggataatgagcagagaaaggTATGGTACTTAGCCCCAA‑AAGAAACTGGCTCAGCGAAATGCTCATGATGATGATATCCGGCGTAGTGGAAGTGGCACGCACGCGCTGATTTGTCAGCCTGCGCCACAGCAGTACTGCGCCGTCAATCAACGTCCACACACCGCAAATACCGCCGAGCGCCATCGCCATGAGTTGTTTCGCTGCCACTGGCAAAAACAACGCGAACATCCAGGGCGGCGATAACATGCCGa > 2:81974/19‑250 (MQ=255) tagggtacatgCCCCAAACAGCCAATGGATCAGCAAAATGCCCATGATGATGATATCCGGCGTAGTGGAAGGGGCACGCACGCGCTGATTTGTCACCCTGCTCCACAGCAGTCCGGCGCCGGCAATCAACGTCAACCCACCGCAAATACCGCCTAGCACCATCGCCATGGGTTGTTTCGCTGCCACTGGCAAAAACCACGCGTACATCCAGTGCGGCGTTAACATGCTGAACAAGTGCCCGCAGAAAATc < 2:152312/240‑1 (MQ=255) aggttcgttcgCCCCAA‑CAGACCCTGGTACTGCAAAAGGCTTAGGAGTATGATATCCGGCGTAGTGTACGTGGCACGCAGTCGCTGAGTTGCCAGCCAGCGCCCCCGCAGTCCGGCGCCGTCAATCAACGTCAACACACCGCAAATCCCGCCGAGCACCATCGCCATGAGTTGTTTCGCTGCCACTGGCAAAAACCCCGCGTACATCCAGTGCGGCGTTAACATGCCGATCATGTGCCCGAAGAATATccc < 2:163665/241‑1 (MQ=255) tGGTACTTAGCCCCAA‑CAGACACTGGATCAGCAAAATGCTCCTGATGATGATATCCGGCGTAGTGGAAGTGGCACGCACGCGCTGATTTGTCAGCCTGCGCCACAGCAGTCCTGCGCCGTCAATCAACGTCACCACACCGCAAATACCGCCGAGCACCATCGCCATGAGTTGTTTAGCTGCCACTGGCAAAAACCACGCGTACATCCAGTGCGGCGTTAACATGCCGAACACGTGCCCGAAGAAAATcccc > 2:199097/1‑251 (MQ=255) cgtAGCCCCAA‑CAGAACCTGGATCAGCAAAATGCTCATGATGATGATATCCGGCGTAGGGGAAGTGGCACGCACGCGCTGACTTGTCAGCCTGCGCCACAGCAGTCCTGCGCCGTCAATCAACGTCAACACACCTCAAATAACGCCGAGCACCATCGCCATGAGTTGTTTCGCTGCCACTGGCAAAATCCACGCGTACATCCAGTGCGTCGTTAACATGCCTAACAAGTGCCCGAAGAAAAGCCCCAAAAt < 2:105548/249‑1 (MQ=255) ggATCAGCAAAATGCTCATGATGATGATATCCGGCGTAGTGGAAGTGGCACGCACGCGCTGATTTGTCAGCCTGCGCCACAGCAGTCCTGCGCCGTCAATCAACGTCAACACACCGCAAATACCGCCGAGCACCATCGCCATGAGTTGTTTCGCTGCCACTGGCAAAAACCACGCGTACATCCAGTGCGGCGTTAACATGCCGAACAAGTGCCCGAAGAAAATCCCCAAAATGCCGATATGGAACAGATTc < 1:89076/251‑1 (MQ=255) aGCAAAATGCTCATGATGATGATATCCGGCGTAGTGGAAGTGGCACGCACGCGCTGATTTGTCAGCCTGCGCCACAGCAGTCCTGCGCCGTCAATCAACGTCAACACACCGCAAATACCGCCGAGCACCATCGCCATGAGTTGTTTCGCTGCCACTGGCAAAAACCACGCGTACATCCAGTGCGGCGTTAACATGCCGAACAAGTGCCCGAAGAAAATCCCCAAAATGCCGATATGGAACAGATTCGAcc > 1:2260/1‑250 (MQ=255) tgatATCCGGCGTAGTGGAAGTGGCACGCACGCGCTGATTTGTCAGCCTGCGCCACAGCAGTCCTGCGCCGTCAATCAACGTCAACACACCGCAAATACCGCCGAGCACCATCGCCATGAGTTGTTTCGCTGCCACTGGCAAAAACCACGCGTACATCCAGTGCGGCGTTAACATGCCGAACAAGTGCCCGAAGAAAATCCCCAAAATGCCGATATGGAACAGATTCGACCATATCACCATCCCGCGttt > 1:501681/1‑250 (MQ=255) gatATCCGGCGTAGTGGAAGTGGCACGCACGCGCTGATTTGTCAGCCTGCGCCACAGCAGTCCTGCGCCGTCAATCAACGTCAACACACCGCAAATAcc > 1:323999/1‑99 (MQ=255) gatATCCGGCGTAGTGGAAGTGGCACGCACGCGCTGATTTGTCAGCCTGCGCCACAGCAGTCCTGCGCCGGCAATCAACGTCAACACACCGCAAATAcc < 2:323999/99‑1 (MQ=255) cGGCGTAGTGGAAGTGGCACGCACGCGCTGATTTGTCAGCCTGCGCCACAGCAGTCCTGCGCCGTCAATCAACGTCAACACACCGCAAATACCGCCGAGCACCATCGCCATGAGTTGTTTCGCTGCCACTGGCAAAAACCACGCGTACATCCAGTGCGGCGTTAACATGCCGAACAAGTGCCCGAAGAAAATCCCCAAAATGCCGATATGGAACAGATTc > 1:86759/1‑220 (MQ=255) gcacgcacGCGCTGATTTGTCAGCCTGCGCCACAGCAGTCCTGCGCCGTCAATCAACGTCAACACACCGCAAATACCGCCGAGCACCATCGCCATGAGTTGTTTCGCTGCCACTGGCAAAAACCACGCGTACATCCAGTGCGGCGTTAACATGCCGAACAAGTGCCCGAAGAAAATCCCCAAAATGCCGATATGGAACAGATTCGACCATATCACCATCCCGCGTTTATCGAGCATTTGACTTGAGGAGgc < 1:199097/251‑1 (MQ=255) acgcacgcGCTGATTTGTCAGCCTGCGCCACAGCAGTCCTGCGCCGTCAATCAACGTCAACACACCGCAAATACCGCCGAGCACCATCGCCATGAGTTGTTTCGCTGCCACTGGCAAAAACCACGCGTACATCCAGTGCGGCGTTAACATGCCGAACAAGTGCCCGAAGAAAATCCCCAAAATGCCGATATGGAACAGATTCGACCATATCACCATCCCGCGTTTATCGAGCATTTGACTTGAGGAGgcgc > 1:169282/1‑251 (MQ=255) gcgcTGATTTGTCAGCCTGCGCCACAGCAGTCCTGCGCCGTCAATCAACGTCAACACACCGCAAATACCGCCGAGCACCATCGCCATGAGTTGTTTCGCTGCCACTGGCAAAAACCACGCGTACATCCAGTGCGGCGTTAACATGCCGAACAAGTGCCCGAAGAAAATCCCCAAAATGCCGATATGGAACAGATTCGACCATATCACCATCCCGCGTTTATCGAGCATTTGACTTTAGGAGGCGCGCCAgg > 1:240637/1‑251 (MQ=255) cgcTGATTTGTCAGCCTGCGCCACAGCAGTCCTGCGCCGTCAATCAACGTCAACACACCGCAAATACCGCCGAGCACCATCGCCATGAGTTGTTTCGCTGCCACTGGCAAAAACCACGCGTACATCCAGTGCGGCGTTAACATGCCGAACAAGTGCCCGAAGAAAATCCCCAAAATGCCGATATGGAACAGATTCGACCATATCACCATCCCGCGTTTATCGAGCATTTGACTTGAGGAGGCGCGCCAGgt < 1:538705/251‑1 (MQ=255) gATTTGTCAGCCTGCGCCACAGCAGTCCTGCGCCGTCAATCAACGTCAACACACCGCAAATACCGCCGAGCACCATCGCCATGAGTTGTTTCGCTGCCACTGGCAAAAACCACGCGTACATCCAGTGCGGCGTTAACATGCCGAACAAGTGCCCGAAGAAAATCTCCAAAATGCCGATATGGAACAGATTCGACCATATCACCATCCCGCGTTTATCGAGCATTTGACTTGAGGAGGCGCGCCAGGTGTa < 1:412648/250‑1 (MQ=255) gcCACACCAGTCCTGCGACGTCAATCAACGTCAACACACCGCAAATACCGCCGAGCACCATCGCCATGAGTTGTTTCGCTGCCACTGGCAAAAACCACGCGTACATCCAGTGCGGCGTTAACATGCCGAACAAGTGCCCGAAGAAAATCCCCAAAATGCCGATATGGAACAGATTCGAACATATCACCACCCCGCGTTCATCGAGCATTTGACTTGAGGAGGCGCGCCAGGGGTATTGACCGTAGTCGt > 2:239532/1‑249 (MQ=255) tCCTGCGCCGTCAATCAACGTCAACACACCGCAAATACCGCCGAGCACCATCGCCATGAGTTGTTTCGCTGCCACTGGCAAAAACCACGCGTACATCCAGTGCGGCGTTAACATGCCGAACAAGTGCCCGAAGAAAATCCCCAAAATGCCGATATGGAACAGATTCGACCATATCACCATCCCGCGTTTATCGAGCAttt > 1:533739/1‑200 (MQ=255) | AGGCGGAAGACGAACGCTACGCCGTTGAGCATCTCTGACGATCCACCACGGAAAGTGACAATGCTTTGCGCCCAACCCACCAGCTTCATCATTTCGCTACCATCAGGATACTGTGCTGAAAACGGTATGGTACTTAGCCCCAA‑CAGACACTGGATCAGCAAAATGCTCATGATGATGATATCCGGCGTAGTGGAAGTGGCACGCACGCGCTGATTTGTCAGCCTGCGCCACAGCAGTCCTGCGCCGCCAATCAACGTCAACACACCGCAAATACCGCCGAGCACCATCGCCATGAGTTGTTTCGCTGCCACTGGCAAAAACCACGCGTACATCCAGTGCGGCGTTAACATGCCGAACAAGTGCCCGAAGAAAATCCCCAAAATGCCGATATGGAACAGATTCGACCATATCACCATCCCGCGTTTATCGAGCATTTGACTTGAGGAGGCGCGCCAGGTGTACTGCCCGTAGTCGT > NC_000913/1536058‑1536532 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |