| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,531,318 | C→T | intergenic (‑814/‑498) | yncO ← / → ydcC | protein YncO/H repeat‑associated putative transposase YdcC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,531,318 | 0 | C | T | 87.5% | 36.9 / ‑1.0 | 16 | intergenic (‑814/‑498) | yncO/ydcC | protein YncO/H repeat‑associated putative transposase YdcC |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base T (10/4); total (11/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.31e-01 | |||||||||||
ATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGTAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTAACGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGAAGGTGTAAGCATCCGATATTATATTTCATCAAAGGATATGGATGCTAAAGAATTTGCACATGCTATCAGAGCGCACTGGCTGATCGAGCACAGTCTTCATTGGGTGTTAGATGTAAAAATGAATGAAGATGCCAGCCGGATAAGA > NC_000913/1531073‑1531558 | aTTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGTAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTAACGTCTGa < 2:233764/250‑1 (MQ=255) tAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGTAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTAACGTCTGAACTTTTGTGATTTTGAAtt > 1:197885/1‑251 (MQ=255) aaGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGTAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTAACGCCTGa > 1:279195/1‑205 (MQ=255) aaGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGTAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTAACGCCTGa < 2:279195/205‑1 (MQ=255) tatCGCTTCGAAGATCAAAGATAAAAAAGCAGCTTATCTTCTGGCAGTAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTAACGTCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTgtgt > 1:176603/1‑250 (MQ=255) cGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGTAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTAACGTCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGc > 1:122604/1‑250 (MQ=255) aaTCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTAACGTCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGAAGGTGTAAGCATcc < 1:256838/251‑1 (MQ=255) aGGAAAAATTTCCTGTAAATGAGTTTACTAATTATAAAGTCTATTCGATTAGTACGCAGGATTTAATTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAAAGTAAAGTCTGACCTTATGTGATTTTGAATTAGAATGGAAGGGAATAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAAAAGAGAGAAGATAAATCAGAAGAAGGTGTAAGCATCCTATATACTATTACATCAAAgacaataa > 2:337478/1‑243 (MQ=255) gTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACATGTTTGCATATTGTCAGTAACGTAACGTCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGAAGGTGTAAGCATCCGATATTATATTTCATCAAAGGATATGGATGCTAAAGAAttt < 1:120098/250‑1 (MQ=255) atAGTACGCAGTAGATAAGTCAAGGAAGTAAAGAAACGCGTTTGCATATTGTCAGTAACGAAACGTCTGAATTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGATTTGTGTAGCATTGTCATTCAGGCATAATAAAGAAGATAAATCAGCAGAAGGTGTAAGCATCCGATATTATATTTCATCAAAGGATATGGATGCTAAAGAATTTGCCCATGCTATCAGAGCTCACTGGCTTATCGAGc < 2:13946/249‑1 (MQ=255) aaGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTAACGTCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGAAGGTGTAAGCATCCGATATTATATTTCATCAAAGGATATGGATGCTAAAGAATTTGCACATGCTATCAGAGCGCACTGGCTGATCGAGCACAGTCTTCATTGGgtg > 1:488305/1‑251 (MQ=255) aaGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTAACGTCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGAAGGTGTAAGCATCCGATATTATATTTCATCAAAGGATATGGATGCTAAAGAATTTGCACATGCTATCAGAGAGCACTGGCTGATCGAGCACAGTCTTCATTggggg > 1:427240/1‑249 (MQ=255) gaaaTACGTATGCATATTGTCAGTAACGTAACGTCTGAACTTTTGAGATTTTGAATTCGAATGGAAGGGATTAAAACAGCTTTGTGTAGCATTGTCATTCAGGCAGCAGAAAGACGATAAATCAGCAGAAGGTGTAAGCATCCGATATTATCTTTCATCAAAGGATATGGATGCTAAAGGATTTGCACAAGCTATAAGATCGCACTGGCTGAACGAGCACAGACAGCATTGGGCGTTAGATGTAAAaatg > 2:189891/1‑250 (MQ=255) tGCATATTTTCAATAACATAACGTCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGATTTGTGTAGCATTGTCCTTCAGGCAGAAGGAAGAAGATAAATCAGCAGAAGGTGTACGAATCCGATATTATATTTCATCAATGGATATGAGTGCTAACAACATTGCACATGCTATCAGAACACAATGGCTGAGAGAACACAGTCTTCATTGGATGGTATGTGGAAAACTGAATGAAGATGc > 2:145405/1‑251 (MQ=255) taacgtaacgTCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGAAGGTGTAAGCATCCGATATTATATTTCATCAAAGGATATGGATGCTAAAGAATTTGCACATGCTATCAGAGCGCACTGGCTGATCGAGCACAGTCTTCATTGGGTGTTAGATGTAAAAATGAATGAAGATGCCAGCCGGATa > 1:938/1‑248 (MQ=255) acgtaacgTCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGAAGGTGTAAGCATCCGATATTATATTTCATCAAAGGATATGGATGCTAAAGAATTTGCACATGCTATCAGAGCGCACTGGCTGATCGAGCACAGTCTTCATTGGGAGTTAGATGTAAAAATGAATGAAGATGCCAGCCGGATaaga > 1:319712/1‑249 (MQ=255) | ATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGTAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTAACGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGAAGGTGTAAGCATCCGATATTATATTTCATCAAAGGATATGGATGCTAAAGAATTTGCACATGCTATCAGAGCGCACTGGCTGATCGAGCACAGTCTTCATTGGGTGTTAGATGTAAAAATGAATGAAGATGCCAGCCGGATAAGA > NC_000913/1531073‑1531558 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |