Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	313398	315228	1831	4 [2]	[0] 35	ykgR/insE1	putative membrane protein YkgR/IS3 element protein InsE

CAATGGTTATATTCGGGCTTCTGGCTGGAAAAAATCGCCGGATATTGAGGATTATCAGGAACGCCCGGCGAATGGCTGGGATATTCGTGCTGAGGGCTATTTACCCGCCTGGCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGT  >  NC_000913/314992‑315465                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                             tgcggtgagaaattcaatgtggcgttgagatgcttaaaggttcacaacgctactttgctccatcctttacctcgatcatcatgataacgatcggtttgttgttgtgttttatgaccaagtagtttttgtgtgtctaacccctgttctttatacagacgttcagataaagacctttgctcatggaatgtcgcaggggaaccctctccccagtcacttcttgctaaatctctcgcttgaTCTTACCCAGCAAt                                                                                                                                                                                                                                 <  1:21140‑M1/14‑1 (MQ=255)  gcggtgagaaattcaatgtggcgttgagatgcttaaaggttcacaacgctactttgctccatcctttacctcgatcatcatgataacgatcggtttgttgttgtgttttatgaccaagtagtttttgtgtgtctaacccctgttctttatacagacgttcagataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATa                                                                                                                                                                                                                                >  1:353863‑M1/237‑251 (MQ=255)            attcaatgtggcgttgagatgcttaaaggttcacaacgctactttgctccatcctttacctcgatcatcatgataacgatcggtttgttgttgtgttttatgaccaagtagtttttgtgtgtctaacccctgttctttatacagacgttcagataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACAcgc                                                                                                                                                                                                                      <  1:346139‑M1/25‑1 (MQ=255)                             gatgcttaaaggttcacaacgctactttgctccatcctttacctcgatcatcatgataacgatcggtttgttgttgtgttttatgaccaagtagtttttgtgtgtctaacccctgttctttatacagacgttcagataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCCGCAATAGTGGACACGCGGCTAAGTGAGTAAAct                                                                                                                                                                                                     <  2:91913‑M1/42‑1 (MQ=255)                                         ttcacaacgctactttgctacatcctttacctcgctcatcatgataacgatcggtttgttgttgtgttttttgaccaagtagtttttgtgtgtataacccctgttctttatacagacgttcagataacgacattcgctcatggaatgtcgcagatgaaccctctccccagtcaattcttgctaaatatctcgcttgcTCTTACCCAGCAATAGTGGACACGCGGCTAAGAAAGTAAACTCTCCGTcagagt                                                                                                                                                                                         <  2:357760‑M1/54‑2 (MQ=255)                                                    actttgctccatcctttacctcgatcatcatgataacgatcggtttgttgttgtgttttatgaccaagtagtttttgtgtgtctaacccctgttctttatacagacgttcagataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt                                                                                                                                                                               >  1:208296‑M1/187‑250 (MQ=255)                                                                   ttacctcgatcatcatgataacgatcggtttgttgttgtgttttatgaccaagtagtttttgtgtgtctaacccctgttctttatacagacgttcagataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaagctctcgcttgaGCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTAt                                                                                                                                                                 >  1:358247‑M1/172‑249 (MQ=255)                                                                                catgataacgatcggtttgttgttgtgttttatgaccaagtagtttttgtgtgtctaacccctgttctttatacagacgttcagataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaaaaaa                                                                                                                                                   >  1:119287‑M1/159‑250 (MQ=255)                                                                                            cggtttgtggttgtgttttatggccaagtagtttttgtgtgtctaacccctgttctttatacagacgttcagataaagacctttgctaatggaatgtcgcaggtgaaccatctccccagtcaattcttgctaaatctcgcgcttgaTCTTAACCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTACAAGGCAGCGGTGACTCAACTGACAAAACCAGTATAAAccag‑aaaaaaccccctgaaaactc                                                                                                                                     <  2:495501‑M1/105‑11 (MQ=255)                                                                                             ggtttgttgttgtgttttatgtcaaagtagtttttgtgtgtctaacacatgttctttataacgacgttcagataacgacatttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTATTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGAATCAACCAGTAAAAAACCCCGTAAACAgcc                                                                                                                                     <  2:30135‑M1/106‑2 (MQ=255)                                                                                             ggtttgttgttgtgttttatgaccaagtagtttttgtgtgtctaacccctgttctttatacagacgttcagataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGc                                                                                                                                      <  1:185924‑M1/105‑1 (MQ=255)                                                                                               tttgtttttgttttttatgaccaagtagtttttgtgtgtctaacccctgttctttatacagacgttcagataaagacctttgctcattgaatgtcgcaggtgaaccctctccccattcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCTTAAACAGCAt                                                                                                                                    >  2:258127‑M1/144‑250 (MQ=255)                                                                                                 tgttgttgtgttttatgaccaagtagtttttgtgtgtctaacccctgttctttatacagacgttcagataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTc                                                                                                                                  >  1:159980‑M1/142‑250 (MQ=255)                                                                                                     gttgtgttttatgaccaagtagtttttgtgtgtctaacccctgttctttatacagacgttcagataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcctgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTAACAACCAGTAAAAAACCCCGTAAACAGCATTCGCCt                                                                                                                              >  1:430419‑M1/138‑250 (MQ=255)                                                                                                               atgaccaagtagtttttgtgtgtctaacccctgttctttatacagacgttcagataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTcga                                                                                                                     <  1:525000‑M1/122‑2 (MQ=255)                                                                                                                    caagtagtttttgtgtgtctaacccctgttctttatacagacgttcagataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGa                                                                                                                <  1:297056‑M1/127‑1 (MQ=255)                                                                                                                          gtttttgtgtgtctaacccctgttctttatacagacgttcagataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTg                                                                                                         <  1:197102‑M1/134‑1 (MQ=255)                                                                                                                                      ctaacccctgttctttatacagacgttcagataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAAc                                                                                            <  1:336365‑M1/147‑1 (MQ=255)                                                                                                                                        aacccctgttctttatacagacgttcagataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGaa                                                                                             >  1:91913‑M1/103‑248 (MQ=255)                                                                                                                                          cccctgttctttatacagacgttcagataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGCGGTGACTCACATGACAAAAACAGTATCAACCAGTaa                                                                                                                                                       <  2:453221‑M1/88‑1 (MQ=255)                                                                                                                                          cccctgttctttatacagacgttcagataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaa                                                                                                                                                       >  1:453221‑M1/101‑188 (MQ=255)                                                                                                                                               tgtctttatacagacgttcagataaagacctttgctcagggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATCCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGACCGCATCgg                                                                                     >  2:408805‑M1/96‑249 (MQ=255)                                                                                                                                                   tttatacagacgttcagataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTAc                                                                               <  1:430887‑M1/160‑1 (MQ=255)                                                                                                                                                                 cagataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTg                                                                 >  1:507323‑M1/78‑251 (MQ=255)                                                                                                                                                                 cagataaagacctttgctaatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgcTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGGGACTCACATGACAACAACAGTCTCAACAAGTACAAAACCCCGTAACAAGCCTTCGCCTGAATTTCGCAGTGAAGACCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCgtt                                                                 <  2:221596‑M1/174‑2 (MQ=255)                                                                                                                                                                    ataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCATCCCGTGAAc                                                              >  2:74328‑M1/75‑251 (MQ=255)                                                                                                                                                                    ataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCGCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAAc                                                              >  1:360713‑M1/75‑251 (MQ=255)                                                                                                                                                                           cctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCt                                                       >  1:208099‑M1/68‑251 (MQ=255)                                                                                                                                                                                           gtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGCGGACACGCGGCTAAGAGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAACCAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGAGAAGCACTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAActc                                       <  2:461406‑M1/200‑1 (MQ=255)                                                                                                                                                                                                     aaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGgc                             <  1:250315‑M1/210‑1 (MQ=255)                                                                                                                                                                                                      accctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGgcg                            <  1:45603‑M1/211‑1 (MQ=255)                                                                                                                                                                                                                            gctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACGCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATcagcag      >  2:346139‑M1/19‑251 (MQ=255)                                                                                                                                                                                                                              taaatctctcgcttgaTCTTACCAAGCAATAGTGGACACGCGGCTAAGTGCGTAAACTCTCAGACAGAGGTGACTCACATGACAAAAACAGGATCAACCAGTAAAAAACACCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCACTGAAGCTTGCTGAACGCATCGGTGTTACTGCAGCAGCCCGAGAACTCAGCATGTAAGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATAAGCAGAc    <  2:65707‑M1/235‑1 (MQ=255)                                                                                                                                                                                                                               aaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACg   <  1:177403‑M1/236‑1 (MQ=255)                                                                                                                                                                                                                                aatcgcgcgcttgaTCTTACCCAGCAATAGTGGAAACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGGATCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTTAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCAGTATGAAGCACAACTCTACAACTGGCGCAGTAAAGAGCAAAATCAGTAGACGt  >  2:525000‑M1/15‑251 (MQ=255)                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                             CAATGGTTATATTCGGGCTTCTGGCTGGAAAAAATCGCCGGATATTGAGGATTATCAGGAACGCCCGGCGAATGGCTGGGATATTCGTGCTGAGGGCTATTTACCCGCCTGGCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGT  >  NC_000913/314992‑315465

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑